Experiment: L-Fucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS03970 and ABIE41_RS03975 are separated by 127 nucleotides ABIE41_RS03975 and ABIE41_RS03980 are separated by 166 nucleotides
ABIE41_RS03970: ABIE41_RS03970 - O-succinylhomoserine sulfhydrylase, at 825,082 to 826,278
_RS03970
ABIE41_RS03975: ABIE41_RS03975 - pyrimidine 5'-nucleotidase, at 826,406 to 827,149
_RS03975
ABIE41_RS03980: ABIE41_RS03980 - acetylglutamate kinase, at 827,316 to 828,215
_RS03980
Position (kb) 826
827
828 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 825.653 kb on + strand, within ABIE41_RS03970 at 825.917 kb on + strand, within ABIE41_RS03970 at 825.917 kb on + strand, within ABIE41_RS03970 at 825.918 kb on - strand, within ABIE41_RS03970 at 825.918 kb on - strand, within ABIE41_RS03970 at 825.920 kb on - strand, within ABIE41_RS03970 at 826.009 kb on + strand, within ABIE41_RS03970 at 826.098 kb on - strand, within ABIE41_RS03970 at 826.098 kb on - strand, within ABIE41_RS03970 at 826.154 kb on + strand, within ABIE41_RS03970 at 826.154 kb on + strand, within ABIE41_RS03970 at 826.611 kb on - strand, within ABIE41_RS03975 at 826.611 kb on - strand, within ABIE41_RS03975 at 826.638 kb on + strand, within ABIE41_RS03975 at 826.638 kb on + strand, within ABIE41_RS03975 at 826.639 kb on - strand, within ABIE41_RS03975 at 826.639 kb on - strand, within ABIE41_RS03975 at 826.639 kb on - strand, within ABIE41_RS03975 at 826.639 kb on - strand, within ABIE41_RS03975 at 826.639 kb on - strand, within ABIE41_RS03975 at 826.911 kb on + strand, within ABIE41_RS03975 at 826.920 kb on + strand, within ABIE41_RS03975 at 826.920 kb on + strand, within ABIE41_RS03975 at 826.921 kb on - strand, within ABIE41_RS03975 at 826.921 kb on - strand, within ABIE41_RS03975 at 826.921 kb on - strand, within ABIE41_RS03975 at 826.923 kb on + strand, within ABIE41_RS03975 at 826.923 kb on + strand, within ABIE41_RS03975 at 826.924 kb on - strand, within ABIE41_RS03975 at 826.924 kb on - strand, within ABIE41_RS03975 at 826.926 kb on + strand, within ABIE41_RS03975 at 826.926 kb on + strand, within ABIE41_RS03975 at 826.927 kb on - strand, within ABIE41_RS03975 at 826.927 kb on - strand, within ABIE41_RS03975 at 827.031 kb on + strand, within ABIE41_RS03975 at 827.205 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Fucose (C) remove 825,653 + ABIE41_RS03970 0.48 -0.1 825,917 + ABIE41_RS03970 0.70 -0.8 825,917 + ABIE41_RS03970 0.70 -0.7 825,918 - ABIE41_RS03970 0.70 +1.0 825,918 - ABIE41_RS03970 0.70 +0.7 825,920 - ABIE41_RS03970 0.70 +0.4 826,009 + ABIE41_RS03970 0.77 -0.2 826,098 - ABIE41_RS03970 0.85 -0.8 826,098 - ABIE41_RS03970 0.85 -3.3 826,154 + ABIE41_RS03970 0.90 -2.9 826,154 + ABIE41_RS03970 0.90 -0.3 826,611 - ABIE41_RS03975 0.28 -1.1 826,611 - ABIE41_RS03975 0.28 -0.5 826,638 + ABIE41_RS03975 0.31 -2.0 826,638 + ABIE41_RS03975 0.31 +0.2 826,639 - ABIE41_RS03975 0.31 -0.3 826,639 - ABIE41_RS03975 0.31 -0.4 826,639 - ABIE41_RS03975 0.31 +1.9 826,639 - ABIE41_RS03975 0.31 -0.3 826,639 - ABIE41_RS03975 0.31 +0.3 826,911 + ABIE41_RS03975 0.68 +0.3 826,920 + ABIE41_RS03975 0.69 +0.2 826,920 + ABIE41_RS03975 0.69 -0.1 826,921 - ABIE41_RS03975 0.69 +1.5 826,921 - ABIE41_RS03975 0.69 -0.1 826,921 - ABIE41_RS03975 0.69 -0.8 826,923 + ABIE41_RS03975 0.69 +0.9 826,923 + ABIE41_RS03975 0.69 +0.3 826,924 - ABIE41_RS03975 0.70 +1.5 826,924 - ABIE41_RS03975 0.70 +0.1 826,926 + ABIE41_RS03975 0.70 -0.3 826,926 + ABIE41_RS03975 0.70 -0.1 826,927 - ABIE41_RS03975 0.70 -0.1 826,927 - ABIE41_RS03975 0.70 +0.5 827,031 + ABIE41_RS03975 0.84 +0.4 827,205 - -0.6
Or see this region's nucleotide sequence