Strain Fitness in Variovorax sp. OAS795 around ABID97_RS26850

Experiment: Fumarate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS26845 and ABID97_RS26850 are separated by 20 nucleotidesABID97_RS26850 and ABID97_RS26855 are separated by 75 nucleotides ABID97_RS26845: ABID97_RS26845 - carotenoid oxygenase family protein, at 291,455 to 292,885 _RS26845 ABID97_RS26850: ABID97_RS26850 - MerR family transcriptional regulator, at 292,906 to 293,946 _RS26850 ABID97_RS26855: ABID97_RS26855 - tripartite tricarboxylate transporter substrate binding protein, at 294,022 to 294,996 _RS26855 Position (kb) 292 293 294Strain fitness (log2 ratio) -1 0 1at 292.735 kb on - strand, within ABID97_RS26845at 292.953 kb on - strandat 293.232 kb on - strand, within ABID97_RS26850at 293.337 kb on - strand, within ABID97_RS26850at 293.752 kb on + strand, within ABID97_RS26850at 294.023 kb on + strandat 294.302 kb on + strand, within ABID97_RS26855at 294.303 kb on - strand, within ABID97_RS26855at 294.443 kb on + strand, within ABID97_RS26855at 294.443 kb on + strand, within ABID97_RS26855at 294.449 kb on - strand, within ABID97_RS26855at 294.449 kb on - strand, within ABID97_RS26855

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate (C)
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292,735 - ABID97_RS26845 0.89 -0.9
292,953 - +0.2
293,232 - ABID97_RS26850 0.31 +0.0
293,337 - ABID97_RS26850 0.41 +0.3
293,752 + ABID97_RS26850 0.81 +1.7
294,023 + -0.1
294,302 + ABID97_RS26855 0.29 +0.3
294,303 - ABID97_RS26855 0.29 -0.3
294,443 + ABID97_RS26855 0.43 +0.5
294,443 + ABID97_RS26855 0.43 -0.8
294,449 - ABID97_RS26855 0.44 -0.0
294,449 - ABID97_RS26855 0.44 -1.3

Or see this region's nucleotide sequence