Strain Fitness in Variovorax sp. OAS795 around ABID97_RS26605

Experiment: Fumarate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS26600 and ABID97_RS26605 overlap by 4 nucleotidesABID97_RS26605 and ABID97_RS26610 are separated by 148 nucleotidesABID97_RS26610 and ABID97_RS26615 overlap by 4 nucleotides ABID97_RS26600: ABID97_RS26600 - ATP-binding protein, at 243,035 to 244,870 _RS26600 ABID97_RS26605: ABID97_RS26605 - sigma-54 dependent transcriptional regulator, at 244,867 to 246,231 _RS26605 ABID97_RS26610: ABID97_RS26610 - helix-turn-helix domain-containing protein, at 246,380 to 246,871 _RS26610 ABID97_RS26615: ABID97_RS26615 - nucleotidyl transferase AbiEii/AbiGii toxin family protein, at 246,868 to 247,524 _RS26615 Position (kb) 244 245 246 247Strain fitness (log2 ratio) -2 -1 0 1at 245.578 kb on + strand, within ABID97_RS26605at 245.783 kb on - strand, within ABID97_RS26605

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate (C)
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245,578 + ABID97_RS26605 0.52 -2.7
245,783 - ABID97_RS26605 0.67 -0.9

Or see this region's nucleotide sequence