Strain Fitness in Variovorax sp. OAS795 around ABID97_RS26535

Experiment: Fumarate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS26530 and ABID97_RS26535 are separated by 10 nucleotidesABID97_RS26535 and ABID97_RS26540 are separated by 13 nucleotides ABID97_RS26530: ABID97_RS26530 - pyruvate dehydrogenase (acetyl-transferring), homodimeric type, at 223,409 to 226,082 _RS26530 ABID97_RS26535: ABID97_RS26535 - dihydrolipoyllysine-residue acetyltransferase, at 226,093 to 227,694 _RS26535 ABID97_RS26540: ABID97_RS26540 - dihydrolipoyl dehydrogenase, at 227,708 to 229,504 _RS26540 Position (kb) 226 227 228Strain fitness (log2 ratio) -2 -1 0 1at 225.190 kb on - strand, within ABID97_RS26530at 225.196 kb on - strand, within ABID97_RS26530at 225.198 kb on + strand, within ABID97_RS26530at 225.375 kb on + strand, within ABID97_RS26530at 225.435 kb on + strand, within ABID97_RS26530at 225.459 kb on + strand, within ABID97_RS26530at 225.462 kb on + strand, within ABID97_RS26530at 225.463 kb on - strand, within ABID97_RS26530at 225.463 kb on - strand, within ABID97_RS26530at 227.276 kb on - strand, within ABID97_RS26535at 227.476 kb on + strand, within ABID97_RS26535at 227.566 kb on + strandat 228.078 kb on - strand, within ABID97_RS26540at 228.195 kb on - strand, within ABID97_RS26540

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate (C)
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225,190 - ABID97_RS26530 0.67 -2.4
225,196 - ABID97_RS26530 0.67 -1.1
225,198 + ABID97_RS26530 0.67 -2.5
225,375 + ABID97_RS26530 0.74 -1.0
225,435 + ABID97_RS26530 0.76 -0.9
225,459 + ABID97_RS26530 0.77 -0.2
225,462 + ABID97_RS26530 0.77 -2.6
225,463 - ABID97_RS26530 0.77 -0.7
225,463 - ABID97_RS26530 0.77 -2.5
227,276 - ABID97_RS26535 0.74 -2.2
227,476 + ABID97_RS26535 0.86 -0.6
227,566 + -0.1
228,078 - ABID97_RS26540 0.21 -1.3
228,195 - ABID97_RS26540 0.27 -0.9

Or see this region's nucleotide sequence