Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS20045 and ABID97_RS20050 are separated by 49 nucleotides ABID97_RS20050 and ABID97_RS20055 are separated by 26 nucleotides ABID97_RS20055 and ABID97_RS20060 are separated by 254 nucleotides
ABID97_RS20045: ABID97_RS20045 - transporter substrate-binding domain-containing protein, at 4,143,296 to 4,144,093
_RS20045
ABID97_RS20050: ABID97_RS20050 - amino acid ABC transporter permease, at 4,144,143 to 4,144,796
_RS20050
ABID97_RS20055: ABID97_RS20055 - amino acid ABC transporter permease, at 4,144,823 to 4,145,494
_RS20055
ABID97_RS20060: ABID97_RS20060 - hypothetical protein, at 4,145,749 to 4,147,353
_RS20060
Position (kb) 4144
4145
4146 Strain fitness (log2 ratio) -1
0
1 at 4144.140 kb on + strand at 4144.352 kb on - strand, within ABID97_RS20050 at 4144.857 kb on + strand at 4144.903 kb on - strand, within ABID97_RS20055 at 4144.924 kb on - strand, within ABID97_RS20055 at 4144.924 kb on - strand, within ABID97_RS20055 at 4145.053 kb on - strand, within ABID97_RS20055 at 4145.317 kb on - strand, within ABID97_RS20055 at 4145.317 kb on - strand, within ABID97_RS20055 at 4145.488 kb on - strand at 4145.579 kb on + strand at 4145.592 kb on - strand at 4145.620 kb on + strand at 4145.909 kb on - strand at 4146.085 kb on + strand, within ABID97_RS20060 at 4146.086 kb on - strand, within ABID97_RS20060 at 4146.173 kb on - strand, within ABID97_RS20060 at 4146.430 kb on + strand, within ABID97_RS20060 at 4146.430 kb on + strand, within ABID97_RS20060 at 4146.451 kb on + strand, within ABID97_RS20060
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 4,144,140 + -0.8 4,144,352 - ABID97_RS20050 0.32 -0.4 4,144,857 + -0.0 4,144,903 - ABID97_RS20055 0.12 +0.6 4,144,924 - ABID97_RS20055 0.15 +0.1 4,144,924 - ABID97_RS20055 0.15 -1.3 4,145,053 - ABID97_RS20055 0.34 +1.0 4,145,317 - ABID97_RS20055 0.74 -0.5 4,145,317 - ABID97_RS20055 0.74 +0.3 4,145,488 - +0.3 4,145,579 + +0.4 4,145,592 - +1.4 4,145,620 + -0.7 4,145,909 - -0.1 4,146,085 + ABID97_RS20060 0.21 +0.9 4,146,086 - ABID97_RS20060 0.21 -0.1 4,146,173 - ABID97_RS20060 0.26 +1.2 4,146,430 + ABID97_RS20060 0.42 -0.0 4,146,430 + ABID97_RS20060 0.42 -0.2 4,146,451 + ABID97_RS20060 0.44 +0.2
Or see this region's nucleotide sequence