Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS19375 and ABID97_RS19380 are separated by 38 nucleotides ABID97_RS19380 and ABID97_RS19385 are separated by 179 nucleotides
ABID97_RS19375: ABID97_RS19375 - bifunctional 2-methylcitrate dehydratase/aconitate hydratase, at 3,998,686 to 4,000,143
_RS19375
ABID97_RS19380: ABID97_RS19380 - 2-methylcitrate synthase, at 4,000,182 to 4,001,348
_RS19380
ABID97_RS19385: ABID97_RS19385 - short-chain fatty acyl-CoA regulator family protein, at 4,001,528 to 4,003,039
_RS19385
Position (kb) 4000
4001
4002 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 3999.314 kb on + strand, within ABID97_RS19375 at 3999.314 kb on + strand, within ABID97_RS19375 at 3999.315 kb on - strand, within ABID97_RS19375 at 3999.315 kb on - strand, within ABID97_RS19375 at 3999.513 kb on + strand, within ABID97_RS19375 at 4000.079 kb on + strand at 4000.080 kb on - strand at 4000.080 kb on - strand at 4000.342 kb on - strand, within ABID97_RS19380 at 4000.358 kb on - strand, within ABID97_RS19380 at 4000.441 kb on + strand, within ABID97_RS19380 at 4000.693 kb on + strand, within ABID97_RS19380 at 4000.901 kb on - strand, within ABID97_RS19380 at 4001.116 kb on + strand, within ABID97_RS19380 at 4001.627 kb on + strand at 4002.054 kb on + strand, within ABID97_RS19385 at 4002.055 kb on - strand, within ABID97_RS19385
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 3,999,314 + ABID97_RS19375 0.43 -1.9 3,999,314 + ABID97_RS19375 0.43 -2.0 3,999,315 - ABID97_RS19375 0.43 -1.1 3,999,315 - ABID97_RS19375 0.43 -0.1 3,999,513 + ABID97_RS19375 0.57 -1.3 4,000,079 + -0.6 4,000,080 - -1.8 4,000,080 - -3.5 4,000,342 - ABID97_RS19380 0.14 -1.4 4,000,358 - ABID97_RS19380 0.15 -0.5 4,000,441 + ABID97_RS19380 0.22 -0.4 4,000,693 + ABID97_RS19380 0.44 -0.8 4,000,901 - ABID97_RS19380 0.62 -1.9 4,001,116 + ABID97_RS19380 0.80 +0.5 4,001,627 + -0.4 4,002,054 + ABID97_RS19385 0.35 -2.9 4,002,055 - ABID97_RS19385 0.35 -0.9
Or see this region's nucleotide sequence