Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS11285 and ABID97_RS11290 are separated by 325 nucleotides ABID97_RS11290 and ABID97_RS11295 are separated by 30 nucleotides ABID97_RS11295 and ABID97_RS11300 are separated by 349 nucleotides
ABID97_RS11285: ABID97_RS11285 - hypothetical protein, at 2,331,110 to 2,331,967
_RS11285
ABID97_RS11290: ABID97_RS11290 - DNA repair protein RadC, at 2,332,293 to 2,332,823
_RS11290
ABID97_RS11295: ABID97_RS11295 - OST-HTH/LOTUS domain-containing protein, at 2,332,854 to 2,333,090
_RS11295
ABID97_RS11300: ABID97_RS11300 - hypothetical protein, at 2,333,440 to 2,334,390
_RS11300
Position (kb) 2332
2333 Strain fitness (log2 ratio) -2
-1
0
1 at 2331.646 kb on + strand, within ABID97_RS11285 at 2331.647 kb on - strand, within ABID97_RS11285 at 2331.676 kb on + strand, within ABID97_RS11285 at 2331.862 kb on - strand, within ABID97_RS11285 at 2332.542 kb on - strand, within ABID97_RS11290 at 2332.855 kb on + strand at 2332.903 kb on - strand, within ABID97_RS11295 at 2332.903 kb on - strand, within ABID97_RS11295 at 2332.955 kb on - strand, within ABID97_RS11295 at 2333.314 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 2,331,646 + ABID97_RS11285 0.62 -0.3 2,331,647 - ABID97_RS11285 0.63 -0.4 2,331,676 + ABID97_RS11285 0.66 +0.7 2,331,862 - ABID97_RS11285 0.88 -1.0 2,332,542 - ABID97_RS11290 0.47 -1.0 2,332,855 + +0.8 2,332,903 - ABID97_RS11295 0.21 -2.1 2,332,903 - ABID97_RS11295 0.21 -0.3 2,332,955 - ABID97_RS11295 0.43 +0.6 2,333,314 + +0.0
Or see this region's nucleotide sequence