Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS07690 and ABID97_RS07695 are separated by 2 nucleotides ABID97_RS07695 and ABID97_RS07700 overlap by 1 nucleotides ABID97_RS07700 and ABID97_RS07705 are separated by 108 nucleotides
ABID97_RS07690: ABID97_RS07690 - FAD-dependent oxidoreductase, at 1,621,718 to 1,622,941
_RS07690
ABID97_RS07695: ABID97_RS07695 - Smr/MutS family protein, at 1,622,944 to 1,623,600
_RS07695
ABID97_RS07700: ABID97_RS07700 - DNA repair protein RadC, at 1,623,600 to 1,624,277
_RS07700
ABID97_RS07705: ABID97_RS07705 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 1,624,386 to 1,624,829
_RS07705
Position (kb)
1622
1623
1624 Strain fitness (log2 ratio)
-1
0
1 at 1622.795 kb on + strand, within ABID97_RS07690 at 1622.940 kb on - strand at 1622.940 kb on - strand at 1623.137 kb on + strand, within ABID97_RS07695 at 1623.137 kb on + strand, within ABID97_RS07695 at 1623.138 kb on - strand, within ABID97_RS07695 at 1623.138 kb on - strand, within ABID97_RS07695 at 1623.910 kb on + strand, within ABID97_RS07700 at 1623.911 kb on - strand, within ABID97_RS07700 at 1623.940 kb on + strand, within ABID97_RS07700 at 1623.940 kb on + strand, within ABID97_RS07700 at 1623.941 kb on - strand, within ABID97_RS07700 at 1624.327 kb on - strand at 1624.343 kb on + strand at 1624.370 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 1,622,795 + ABID97_RS07690 0.88 -0.1 1,622,940 - -1.7 1,622,940 - -0.4 1,623,137 + ABID97_RS07695 0.29 +1.5 1,623,137 + ABID97_RS07695 0.29 +0.4 1,623,138 - ABID97_RS07695 0.30 -0.2 1,623,138 - ABID97_RS07695 0.30 +0.3 1,623,910 + ABID97_RS07700 0.46 +1.2 1,623,911 - ABID97_RS07700 0.46 -0.2 1,623,940 + ABID97_RS07700 0.50 -0.0 1,623,940 + ABID97_RS07700 0.50 -0.8 1,623,941 - ABID97_RS07700 0.50 -0.3 1,624,327 - -0.6 1,624,343 + -0.1 1,624,370 + -0.6
Or see this region's nucleotide sequence