Strain Fitness in Variovorax sp. OAS795 around ABID97_RS07695

Experiment: Fumarate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS07690 and ABID97_RS07695 are separated by 2 nucleotidesABID97_RS07695 and ABID97_RS07700 overlap by 1 nucleotidesABID97_RS07700 and ABID97_RS07705 are separated by 108 nucleotides ABID97_RS07690: ABID97_RS07690 - FAD-dependent oxidoreductase, at 1,621,718 to 1,622,941 _RS07690 ABID97_RS07695: ABID97_RS07695 - Smr/MutS family protein, at 1,622,944 to 1,623,600 _RS07695 ABID97_RS07700: ABID97_RS07700 - DNA repair protein RadC, at 1,623,600 to 1,624,277 _RS07700 ABID97_RS07705: ABID97_RS07705 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 1,624,386 to 1,624,829 _RS07705 Position (kb) 1622 1623 1624Strain fitness (log2 ratio) -1 0 1at 1622.795 kb on + strand, within ABID97_RS07690at 1622.940 kb on - strandat 1622.940 kb on - strandat 1623.137 kb on + strand, within ABID97_RS07695at 1623.137 kb on + strand, within ABID97_RS07695at 1623.138 kb on - strand, within ABID97_RS07695at 1623.138 kb on - strand, within ABID97_RS07695at 1623.910 kb on + strand, within ABID97_RS07700at 1623.911 kb on - strand, within ABID97_RS07700at 1623.940 kb on + strand, within ABID97_RS07700at 1623.940 kb on + strand, within ABID97_RS07700at 1623.941 kb on - strand, within ABID97_RS07700at 1624.327 kb on - strandat 1624.343 kb on + strandat 1624.370 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate (C)
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1,622,795 + ABID97_RS07690 0.88 -0.1
1,622,940 - -1.7
1,622,940 - -0.4
1,623,137 + ABID97_RS07695 0.29 +1.5
1,623,137 + ABID97_RS07695 0.29 +0.4
1,623,138 - ABID97_RS07695 0.30 -0.2
1,623,138 - ABID97_RS07695 0.30 +0.3
1,623,910 + ABID97_RS07700 0.46 +1.2
1,623,911 - ABID97_RS07700 0.46 -0.2
1,623,940 + ABID97_RS07700 0.50 -0.0
1,623,940 + ABID97_RS07700 0.50 -0.8
1,623,941 - ABID97_RS07700 0.50 -0.3
1,624,327 - -0.6
1,624,343 + -0.1
1,624,370 + -0.6

Or see this region's nucleotide sequence