Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS07405 and ABID97_RS07410 are separated by 21 nucleotides ABID97_RS07410 and ABID97_RS07415 are separated by 6 nucleotides ABID97_RS07415 and ABID97_RS07420 are separated by 125 nucleotides ABID97_RS07420 and ABID97_RS07425 are separated by 20 nucleotides
ABID97_RS07405: ABID97_RS07405 - NAD(P)H-dependent glycerol-3-phosphate dehydrogenase, at 1,564,456 to 1,565,493
_RS07405
ABID97_RS07410: ABID97_RS07410 - carboxylating nicotinate-nucleotide diphosphorylase, at 1,565,515 to 1,566,399
_RS07410
ABID97_RS07415: ABID97_RS07415 - quinolinate synthase NadA, at 1,566,406 to 1,567,524
_RS07415
ABID97_RS07420: ABID97_RS07420 - 6-carboxytetrahydropterin synthase, at 1,567,650 to 1,568,012
_RS07420
ABID97_RS07425: ABID97_RS07425 - 7-carboxy-7-deazaguanine synthase, at 1,568,033 to 1,568,671
_RS07425
Position (kb) 1566
1567
1568 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 1565.887 kb on + strand, within ABID97_RS07410 at 1565.888 kb on - strand, within ABID97_RS07410 at 1565.888 kb on - strand, within ABID97_RS07410 at 1565.968 kb on + strand, within ABID97_RS07410 at 1566.437 kb on - strand at 1566.589 kb on + strand, within ABID97_RS07415 at 1566.589 kb on + strand, within ABID97_RS07415 at 1566.589 kb on + strand, within ABID97_RS07415 at 1566.589 kb on + strand, within ABID97_RS07415 at 1566.590 kb on - strand, within ABID97_RS07415 at 1566.590 kb on - strand, within ABID97_RS07415 at 1566.590 kb on - strand, within ABID97_RS07415 at 1566.590 kb on - strand, within ABID97_RS07415 at 1566.590 kb on - strand, within ABID97_RS07415 at 1566.590 kb on - strand, within ABID97_RS07415 at 1566.859 kb on + strand, within ABID97_RS07415 at 1566.860 kb on - strand, within ABID97_RS07415 at 1566.860 kb on - strand, within ABID97_RS07415 at 1566.994 kb on + strand, within ABID97_RS07415 at 1566.994 kb on + strand, within ABID97_RS07415 at 1566.994 kb on + strand, within ABID97_RS07415 at 1566.995 kb on - strand, within ABID97_RS07415 at 1566.995 kb on - strand, within ABID97_RS07415 at 1566.995 kb on - strand, within ABID97_RS07415 at 1566.995 kb on - strand, within ABID97_RS07415 at 1566.995 kb on - strand, within ABID97_RS07415 at 1567.912 kb on + strand, within ABID97_RS07420 at 1567.912 kb on + strand, within ABID97_RS07420 at 1567.913 kb on - strand, within ABID97_RS07420 at 1567.913 kb on - strand, within ABID97_RS07420
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 1,565,887 + ABID97_RS07410 0.42 -2.5 1,565,888 - ABID97_RS07410 0.42 -0.1 1,565,888 - ABID97_RS07410 0.42 -1.7 1,565,968 + ABID97_RS07410 0.51 -2.2 1,566,437 - -1.7 1,566,589 + ABID97_RS07415 0.16 +0.3 1,566,589 + ABID97_RS07415 0.16 -5.5 1,566,589 + ABID97_RS07415 0.16 -1.4 1,566,589 + ABID97_RS07415 0.16 -2.4 1,566,590 - ABID97_RS07415 0.16 -1.4 1,566,590 - ABID97_RS07415 0.16 -1.3 1,566,590 - ABID97_RS07415 0.16 -2.9 1,566,590 - ABID97_RS07415 0.16 -1.7 1,566,590 - ABID97_RS07415 0.16 -2.6 1,566,590 - ABID97_RS07415 0.16 -1.4 1,566,859 + ABID97_RS07415 0.40 -2.7 1,566,860 - ABID97_RS07415 0.41 -2.8 1,566,860 - ABID97_RS07415 0.41 -2.3 1,566,994 + ABID97_RS07415 0.53 -2.3 1,566,994 + ABID97_RS07415 0.53 -1.7 1,566,994 + ABID97_RS07415 0.53 -2.1 1,566,995 - ABID97_RS07415 0.53 -2.0 1,566,995 - ABID97_RS07415 0.53 -2.1 1,566,995 - ABID97_RS07415 0.53 -2.0 1,566,995 - ABID97_RS07415 0.53 -2.1 1,566,995 - ABID97_RS07415 0.53 -0.3 1,567,912 + ABID97_RS07420 0.72 -0.8 1,567,912 + ABID97_RS07420 0.72 +1.4 1,567,913 - ABID97_RS07420 0.72 +0.2 1,567,913 - ABID97_RS07420 0.72 -0.3
Or see this region's nucleotide sequence