Strain Fitness in Variovorax sp. OAS795 around ABID97_RS06295

Experiment: Fumarate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS06285 and ABID97_RS06290 are separated by 7 nucleotidesABID97_RS06290 and ABID97_RS06295 overlap by 35 nucleotidesABID97_RS06295 and ABID97_RS06300 overlap by 4 nucleotidesABID97_RS06300 and ABID97_RS06305 are separated by 28 nucleotides ABID97_RS06285: ABID97_RS06285 - lysophospholipid acyltransferase family protein, at 1,327,191 to 1,328,048 _RS06285 ABID97_RS06290: ABID97_RS06290 - DUF2809 domain-containing protein, at 1,328,056 to 1,328,472 _RS06290 ABID97_RS06295: ABID97_RS06295 - monofunctional biosynthetic peptidoglycan transglycosylase, at 1,328,438 to 1,329,181 _RS06295 ABID97_RS06300: ABID97_RS06300 - shikimate dehydrogenase, at 1,329,178 to 1,330,035 _RS06300 ABID97_RS06305: ABID97_RS06305 - TonB family protein, at 1,330,064 to 1,330,915 _RS06305 Position (kb) 1328 1329 1330Strain fitness (log2 ratio) -2 -1 0 1 2at 1327.786 kb on + strand, within ABID97_RS06285at 1327.786 kb on + strand, within ABID97_RS06285at 1327.786 kb on + strand, within ABID97_RS06285at 1327.786 kb on + strand, within ABID97_RS06285at 1327.786 kb on + strand, within ABID97_RS06285at 1327.787 kb on - strand, within ABID97_RS06285at 1327.787 kb on - strand, within ABID97_RS06285at 1327.787 kb on - strand, within ABID97_RS06285at 1327.843 kb on + strand, within ABID97_RS06285at 1327.942 kb on + strand, within ABID97_RS06285at 1327.942 kb on + strand, within ABID97_RS06285at 1327.942 kb on + strand, within ABID97_RS06285at 1327.942 kb on + strand, within ABID97_RS06285at 1327.943 kb on - strand, within ABID97_RS06285at 1327.943 kb on - strand, within ABID97_RS06285at 1327.943 kb on - strand, within ABID97_RS06285at 1328.060 kb on + strandat 1328.060 kb on + strandat 1328.206 kb on + strand, within ABID97_RS06290at 1328.206 kb on + strand, within ABID97_RS06290at 1328.206 kb on + strand, within ABID97_RS06290at 1328.206 kb on + strand, within ABID97_RS06290at 1328.207 kb on - strand, within ABID97_RS06290at 1328.207 kb on - strand, within ABID97_RS06290at 1328.207 kb on - strand, within ABID97_RS06290at 1328.207 kb on - strand, within ABID97_RS06290at 1328.207 kb on - strand, within ABID97_RS06290at 1328.386 kb on + strand, within ABID97_RS06290at 1328.386 kb on + strand, within ABID97_RS06290at 1328.387 kb on - strand, within ABID97_RS06290at 1328.387 kb on - strand, within ABID97_RS06290at 1328.387 kb on - strand, within ABID97_RS06290at 1328.387 kb on - strand, within ABID97_RS06290at 1328.387 kb on - strand, within ABID97_RS06290at 1328.387 kb on - strand, within ABID97_RS06290at 1328.496 kb on + strandat 1328.598 kb on + strand, within ABID97_RS06295at 1328.598 kb on + strand, within ABID97_RS06295at 1328.599 kb on - strand, within ABID97_RS06295at 1328.599 kb on - strand, within ABID97_RS06295at 1328.599 kb on - strand, within ABID97_RS06295at 1328.599 kb on - strand, within ABID97_RS06295at 1328.599 kb on - strand, within ABID97_RS06295at 1328.599 kb on - strand, within ABID97_RS06295at 1328.601 kb on + strand, within ABID97_RS06295at 1328.601 kb on + strand, within ABID97_RS06295at 1328.601 kb on + strand, within ABID97_RS06295at 1328.602 kb on - strand, within ABID97_RS06295at 1328.602 kb on - strand, within ABID97_RS06295at 1328.658 kb on + strand, within ABID97_RS06295at 1328.659 kb on - strand, within ABID97_RS06295at 1328.659 kb on - strand, within ABID97_RS06295at 1328.659 kb on - strand, within ABID97_RS06295at 1328.659 kb on - strand, within ABID97_RS06295at 1328.659 kb on - strand, within ABID97_RS06295at 1328.991 kb on + strand, within ABID97_RS06295at 1330.065 kb on + strandat 1330.066 kb on - strandat 1330.066 kb on - strandat 1330.066 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate (C)
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1,327,786 + ABID97_RS06285 0.69 -0.9
1,327,786 + ABID97_RS06285 0.69 -0.2
1,327,786 + ABID97_RS06285 0.69 +0.5
1,327,786 + ABID97_RS06285 0.69 -0.2
1,327,786 + ABID97_RS06285 0.69 +0.2
1,327,787 - ABID97_RS06285 0.69 +0.4
1,327,787 - ABID97_RS06285 0.69 +0.1
1,327,787 - ABID97_RS06285 0.69 +0.1
1,327,843 + ABID97_RS06285 0.76 +0.6
1,327,942 + ABID97_RS06285 0.88 -1.4
1,327,942 + ABID97_RS06285 0.88 +0.8
1,327,942 + ABID97_RS06285 0.88 -1.5
1,327,942 + ABID97_RS06285 0.88 +0.1
1,327,943 - ABID97_RS06285 0.88 -1.0
1,327,943 - ABID97_RS06285 0.88 -0.2
1,327,943 - ABID97_RS06285 0.88 +0.9
1,328,060 + -1.9
1,328,060 + -0.4
1,328,206 + ABID97_RS06290 0.36 -0.4
1,328,206 + ABID97_RS06290 0.36 -0.0
1,328,206 + ABID97_RS06290 0.36 +2.2
1,328,206 + ABID97_RS06290 0.36 -0.1
1,328,207 - ABID97_RS06290 0.36 -0.6
1,328,207 - ABID97_RS06290 0.36 +0.1
1,328,207 - ABID97_RS06290 0.36 -0.1
1,328,207 - ABID97_RS06290 0.36 +1.0
1,328,207 - ABID97_RS06290 0.36 -0.3
1,328,386 + ABID97_RS06290 0.79 +0.9
1,328,386 + ABID97_RS06290 0.79 -0.0
1,328,387 - ABID97_RS06290 0.79 -0.1
1,328,387 - ABID97_RS06290 0.79 +1.4
1,328,387 - ABID97_RS06290 0.79 +0.2
1,328,387 - ABID97_RS06290 0.79 -0.2
1,328,387 - ABID97_RS06290 0.79 -0.7
1,328,387 - ABID97_RS06290 0.79 -0.6
1,328,496 + +0.3
1,328,598 + ABID97_RS06295 0.22 +0.1
1,328,598 + ABID97_RS06295 0.22 -0.5
1,328,599 - ABID97_RS06295 0.22 +0.0
1,328,599 - ABID97_RS06295 0.22 +0.0
1,328,599 - ABID97_RS06295 0.22 -0.5
1,328,599 - ABID97_RS06295 0.22 +0.2
1,328,599 - ABID97_RS06295 0.22 -0.2
1,328,599 - ABID97_RS06295 0.22 -0.4
1,328,601 + ABID97_RS06295 0.22 -0.1
1,328,601 + ABID97_RS06295 0.22 -1.1
1,328,601 + ABID97_RS06295 0.22 +0.2
1,328,602 - ABID97_RS06295 0.22 -0.8
1,328,602 - ABID97_RS06295 0.22 -0.4
1,328,658 + ABID97_RS06295 0.30 +0.1
1,328,659 - ABID97_RS06295 0.30 +0.2
1,328,659 - ABID97_RS06295 0.30 -0.3
1,328,659 - ABID97_RS06295 0.30 +0.4
1,328,659 - ABID97_RS06295 0.30 -0.4
1,328,659 - ABID97_RS06295 0.30 -1.6
1,328,991 + ABID97_RS06295 0.74 -2.1
1,330,065 + -0.1
1,330,066 - -0.3
1,330,066 - -0.3
1,330,066 - -0.3

Or see this region's nucleotide sequence