Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS04755 and ABID97_RS04760 are separated by 7 nucleotides ABID97_RS04760 and ABID97_RS04765 are separated by 170 nucleotides ABID97_RS04765 and ABID97_RS04770 are separated by 156 nucleotides ABID97_RS04770 and ABID97_RS04775 overlap by 4 nucleotides
ABID97_RS04755: ABID97_RS04755 - arginine--tRNA ligase, at 990,909 to 992,594
_RS04755
ABID97_RS04760: ABID97_RS04760 - SPOR domain-containing protein, at 992,602 to 993,339
_RS04760
ABID97_RS04765: ABID97_RS04765 - thiol:disulfide interchange protein DsbA/DsbL, at 993,510 to 994,157
_RS04765
ABID97_RS04770: ABID97_RS04770 - lipopolysaccharide transport periplasmic protein LptA, at 994,314 to 995,042
_RS04770
ABID97_RS04775: ABID97_RS04775 - LPS export ABC transporter ATP-binding protein, at 995,039 to 995,833
_RS04775
Position (kb) 993
994
995 Strain fitness (log2 ratio) -1
0
1 at 992.872 kb on - strand, within ABID97_RS04760 at 993.112 kb on + strand, within ABID97_RS04760 at 993.112 kb on + strand, within ABID97_RS04760 at 993.112 kb on + strand, within ABID97_RS04760 at 993.386 kb on + strand at 993.387 kb on - strand at 993.387 kb on - strand at 993.393 kb on + strand at 993.480 kb on + strand at 993.687 kb on + strand, within ABID97_RS04765 at 993.687 kb on + strand, within ABID97_RS04765 at 993.819 kb on + strand, within ABID97_RS04765 at 994.029 kb on + strand, within ABID97_RS04765 at 994.029 kb on + strand, within ABID97_RS04765 at 994.075 kb on - strand, within ABID97_RS04765 at 994.128 kb on + strand at 994.128 kb on + strand at 994.129 kb on - strand at 994.286 kb on + strand at 994.286 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 992,872 - ABID97_RS04760 0.37 -0.7 993,112 + ABID97_RS04760 0.69 +0.5 993,112 + ABID97_RS04760 0.69 -1.7 993,112 + ABID97_RS04760 0.69 +0.3 993,386 + -1.3 993,387 - -0.0 993,387 - +0.2 993,393 + -0.4 993,480 + +0.5 993,687 + ABID97_RS04765 0.27 +0.9 993,687 + ABID97_RS04765 0.27 -1.1 993,819 + ABID97_RS04765 0.48 -0.4 994,029 + ABID97_RS04765 0.80 +0.9 994,029 + ABID97_RS04765 0.80 +0.3 994,075 - ABID97_RS04765 0.87 -0.9 994,128 + +0.1 994,128 + -1.5 994,129 - -0.8 994,286 + -0.9 994,286 + -0.9
Or see this region's nucleotide sequence