Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS03550 and ABID97_RS03555 overlap by 23 nucleotides ABID97_RS03555 and ABID97_RS03560 are separated by 145 nucleotides
ABID97_RS03550: ABID97_RS03550 - ABC transporter substrate-binding protein, at 724,663 to 725,823
_RS03550
ABID97_RS03555: ABID97_RS03555 - (2Fe-2S)-binding protein, at 725,801 to 726,301
_RS03555
ABID97_RS03560: ABID97_RS03560 - molybdopterin cofactor-binding domain-containing protein, at 726,447 to 730,208
_RS03560
Position (kb) 725
726
727 Strain fitness (log2 ratio) -1
0
1
2 at 724.832 kb on - strand, within ABID97_RS03550 at 724.832 kb on - strand, within ABID97_RS03550 at 724.913 kb on - strand, within ABID97_RS03550 at 724.924 kb on + strand, within ABID97_RS03550 at 724.925 kb on - strand, within ABID97_RS03550 at 725.260 kb on + strand, within ABID97_RS03550 at 725.260 kb on + strand, within ABID97_RS03550 at 725.261 kb on - strand, within ABID97_RS03550 at 725.261 kb on - strand, within ABID97_RS03550 at 725.434 kb on + strand, within ABID97_RS03550 at 725.435 kb on - strand, within ABID97_RS03550 at 725.435 kb on - strand, within ABID97_RS03550 at 725.605 kb on + strand, within ABID97_RS03550 at 725.606 kb on - strand, within ABID97_RS03550 at 725.795 kb on - strand at 725.795 kb on - strand at 725.933 kb on + strand, within ABID97_RS03555 at 726.123 kb on - strand, within ABID97_RS03555 at 727.058 kb on - strand, within ABID97_RS03560 at 727.144 kb on - strand, within ABID97_RS03560
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 724,832 - ABID97_RS03550 0.15 -0.0 724,832 - ABID97_RS03550 0.15 -1.7 724,913 - ABID97_RS03550 0.22 -0.8 724,924 + ABID97_RS03550 0.22 -0.1 724,925 - ABID97_RS03550 0.23 -0.2 725,260 + ABID97_RS03550 0.51 +0.3 725,260 + ABID97_RS03550 0.51 -0.1 725,261 - ABID97_RS03550 0.52 -0.2 725,261 - ABID97_RS03550 0.52 -0.3 725,434 + ABID97_RS03550 0.66 -1.6 725,435 - ABID97_RS03550 0.66 +0.1 725,435 - ABID97_RS03550 0.66 +1.0 725,605 + ABID97_RS03550 0.81 -0.5 725,606 - ABID97_RS03550 0.81 +0.3 725,795 - -0.3 725,795 - -0.6 725,933 + ABID97_RS03555 0.26 +1.9 726,123 - ABID97_RS03555 0.64 +0.2 727,058 - ABID97_RS03560 0.16 -1.0 727,144 - ABID97_RS03560 0.19 +1.0
Or see this region's nucleotide sequence