Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS03240 and ABID97_RS03245 are separated by 57 nucleotides ABID97_RS03245 and ABID97_RS03250 are separated by 22 nucleotides ABID97_RS03250 and ABID97_RS03255 are separated by 376 nucleotides
ABID97_RS03240: ABID97_RS03240 - tripartite tricarboxylate transporter substrate binding protein, at 656,407 to 657,396
_RS03240
ABID97_RS03245: ABID97_RS03245 - cupin domain-containing protein, at 657,454 to 657,813
_RS03245
ABID97_RS03250: ABID97_RS03250 - zinc-binding alcohol dehydrogenase family protein, at 657,836 to 658,828
_RS03250
ABID97_RS03255: ABID97_RS03255 - 3-keto-5-aminohexanoate cleavage protein, at 659,205 to 660,092
_RS03255
Position (kb) 657
658
659 Strain fitness (log2 ratio) -1
0
1
2 at 656.916 kb on - strand, within ABID97_RS03240 at 656.916 kb on - strand, within ABID97_RS03240 at 657.050 kb on + strand, within ABID97_RS03240 at 657.065 kb on + strand, within ABID97_RS03240 at 657.066 kb on - strand, within ABID97_RS03240 at 657.066 kb on - strand, within ABID97_RS03240 at 657.114 kb on - strand, within ABID97_RS03240 at 657.779 kb on + strand at 657.780 kb on - strand at 658.045 kb on - strand, within ABID97_RS03250 at 658.140 kb on + strand, within ABID97_RS03250 at 658.162 kb on - strand, within ABID97_RS03250 at 658.417 kb on - strand, within ABID97_RS03250 at 658.417 kb on - strand, within ABID97_RS03250 at 658.510 kb on - strand, within ABID97_RS03250 at 658.510 kb on - strand, within ABID97_RS03250 at 658.893 kb on - strand at 658.893 kb on - strand at 659.206 kb on + strand at 659.206 kb on + strand at 659.206 kb on + strand at 659.345 kb on - strand, within ABID97_RS03255 at 659.473 kb on + strand, within ABID97_RS03255 at 659.473 kb on + strand, within ABID97_RS03255 at 659.473 kb on + strand, within ABID97_RS03255 at 659.473 kb on + strand, within ABID97_RS03255 at 659.506 kb on + strand, within ABID97_RS03255 at 659.506 kb on + strand, within ABID97_RS03255 at 659.506 kb on + strand, within ABID97_RS03255 at 659.507 kb on - strand, within ABID97_RS03255 at 659.507 kb on - strand, within ABID97_RS03255 at 659.507 kb on - strand, within ABID97_RS03255 at 659.507 kb on - strand, within ABID97_RS03255 at 659.818 kb on - strand, within ABID97_RS03255 at 659.821 kb on + strand, within ABID97_RS03255 at 659.822 kb on - strand, within ABID97_RS03255 at 659.822 kb on - strand, within ABID97_RS03255
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 656,916 - ABID97_RS03240 0.51 -0.2 656,916 - ABID97_RS03240 0.51 -0.8 657,050 + ABID97_RS03240 0.65 -0.4 657,065 + ABID97_RS03240 0.66 -0.4 657,066 - ABID97_RS03240 0.67 -0.2 657,066 - ABID97_RS03240 0.67 -1.0 657,114 - ABID97_RS03240 0.71 -0.1 657,779 + +0.3 657,780 - -0.0 658,045 - ABID97_RS03250 0.21 +0.1 658,140 + ABID97_RS03250 0.31 +0.2 658,162 - ABID97_RS03250 0.33 -0.2 658,417 - ABID97_RS03250 0.59 +0.4 658,417 - ABID97_RS03250 0.59 +0.8 658,510 - ABID97_RS03250 0.68 -0.3 658,510 - ABID97_RS03250 0.68 -0.2 658,893 - -0.4 658,893 - +0.3 659,206 + -0.0 659,206 + +0.0 659,206 + -0.1 659,345 - ABID97_RS03255 0.16 -0.4 659,473 + ABID97_RS03255 0.30 -0.7 659,473 + ABID97_RS03255 0.30 -0.7 659,473 + ABID97_RS03255 0.30 +0.5 659,473 + ABID97_RS03255 0.30 +0.1 659,506 + ABID97_RS03255 0.34 -0.0 659,506 + ABID97_RS03255 0.34 -0.0 659,506 + ABID97_RS03255 0.34 -0.4 659,507 - ABID97_RS03255 0.34 +2.1 659,507 - ABID97_RS03255 0.34 -0.1 659,507 - ABID97_RS03255 0.34 -0.0 659,507 - ABID97_RS03255 0.34 -1.0 659,818 - ABID97_RS03255 0.69 -0.3 659,821 + ABID97_RS03255 0.69 +0.6 659,822 - ABID97_RS03255 0.69 +0.3 659,822 - ABID97_RS03255 0.69 -0.0
Or see this region's nucleotide sequence