Strain Fitness in Variovorax sp. OAS795 around ABID97_RS02565

Experiment: Fumarate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS02560 and ABID97_RS02565 are separated by 8 nucleotidesABID97_RS02565 and ABID97_RS02570 overlap by 4 nucleotides ABID97_RS02560: ABID97_RS02560 - MFS transporter, at 524,102 to 525,277 _RS02560 ABID97_RS02565: ABID97_RS02565 - lysophospholipase, at 525,286 to 526,149 _RS02565 ABID97_RS02570: ABID97_RS02570 - M20 family metallopeptidase, at 526,146 to 527,657 _RS02570 Position (kb) 525 526 527Strain fitness (log2 ratio) -1 0 1 2at 524.417 kb on + strand, within ABID97_RS02560at 524.420 kb on + strand, within ABID97_RS02560at 524.420 kb on + strand, within ABID97_RS02560at 524.420 kb on + strand, within ABID97_RS02560at 524.420 kb on + strand, within ABID97_RS02560at 524.420 kb on + strand, within ABID97_RS02560at 524.420 kb on + strand, within ABID97_RS02560at 524.420 kb on + strand, within ABID97_RS02560at 524.420 kb on + strand, within ABID97_RS02560at 524.420 kb on + strand, within ABID97_RS02560at 524.420 kb on + strand, within ABID97_RS02560at 524.420 kb on + strand, within ABID97_RS02560at 524.420 kb on + strand, within ABID97_RS02560at 524.420 kb on + strand, within ABID97_RS02560at 524.420 kb on + strand, within ABID97_RS02560at 524.421 kb on - strand, within ABID97_RS02560at 524.421 kb on - strand, within ABID97_RS02560at 524.421 kb on - strand, within ABID97_RS02560at 524.421 kb on - strand, within ABID97_RS02560at 524.421 kb on - strand, within ABID97_RS02560at 524.421 kb on - strand, within ABID97_RS02560at 524.421 kb on - strand, within ABID97_RS02560at 524.442 kb on - strand, within ABID97_RS02560at 524.591 kb on + strand, within ABID97_RS02560at 524.591 kb on + strand, within ABID97_RS02560at 524.592 kb on - strand, within ABID97_RS02560at 524.592 kb on - strand, within ABID97_RS02560at 524.592 kb on - strand, within ABID97_RS02560at 524.592 kb on - strand, within ABID97_RS02560at 524.592 kb on - strand, within ABID97_RS02560at 524.592 kb on - strand, within ABID97_RS02560at 524.592 kb on - strand, within ABID97_RS02560at 524.592 kb on - strand, within ABID97_RS02560at 525.065 kb on + strand, within ABID97_RS02560at 525.066 kb on - strand, within ABID97_RS02560at 525.066 kb on - strand, within ABID97_RS02560at 525.066 kb on - strand, within ABID97_RS02560at 525.188 kb on + strandat 525.188 kb on + strandat 525.188 kb on + strandat 525.188 kb on + strandat 525.189 kb on - strandat 525.189 kb on - strandat 525.361 kb on + strandat 525.361 kb on + strandat 525.361 kb on + strandat 525.361 kb on + strandat 525.361 kb on + strandat 525.362 kb on - strandat 525.362 kb on - strandat 525.362 kb on - strandat 525.362 kb on - strandat 525.362 kb on - strandat 525.362 kb on - strandat 525.371 kb on + strandat 525.371 kb on + strandat 525.371 kb on + strandat 525.371 kb on + strandat 525.473 kb on + strand, within ABID97_RS02565at 525.473 kb on + strand, within ABID97_RS02565at 525.473 kb on + strand, within ABID97_RS02565at 525.473 kb on + strand, within ABID97_RS02565at 525.473 kb on + strand, within ABID97_RS02565at 525.473 kb on + strand, within ABID97_RS02565at 525.473 kb on + strand, within ABID97_RS02565at 525.474 kb on - strand, within ABID97_RS02565at 525.474 kb on - strand, within ABID97_RS02565at 526.238 kb on - strandat 526.238 kb on - strandat 526.238 kb on - strandat 526.372 kb on + strand, within ABID97_RS02570at 526.373 kb on - strand, within ABID97_RS02570at 526.373 kb on - strand, within ABID97_RS02570at 526.373 kb on - strand, within ABID97_RS02570at 526.373 kb on - strand, within ABID97_RS02570at 526.499 kb on - strand, within ABID97_RS02570at 526.594 kb on + strand, within ABID97_RS02570at 526.594 kb on + strand, within ABID97_RS02570at 526.595 kb on - strand, within ABID97_RS02570at 526.595 kb on - strand, within ABID97_RS02570at 526.595 kb on - strand, within ABID97_RS02570at 526.595 kb on - strand, within ABID97_RS02570at 526.744 kb on + strand, within ABID97_RS02570at 526.744 kb on + strand, within ABID97_RS02570at 526.744 kb on + strand, within ABID97_RS02570at 526.744 kb on + strand, within ABID97_RS02570at 526.745 kb on - strand, within ABID97_RS02570at 526.745 kb on - strand, within ABID97_RS02570at 526.745 kb on - strand, within ABID97_RS02570at 526.768 kb on + strand, within ABID97_RS02570at 526.768 kb on + strand, within ABID97_RS02570at 526.768 kb on + strand, within ABID97_RS02570at 526.768 kb on + strand, within ABID97_RS02570at 526.769 kb on - strand, within ABID97_RS02570at 526.769 kb on - strand, within ABID97_RS02570at 526.769 kb on - strand, within ABID97_RS02570at 526.769 kb on - strand, within ABID97_RS02570at 526.769 kb on - strand, within ABID97_RS02570at 527.026 kb on + strand, within ABID97_RS02570at 527.026 kb on + strand, within ABID97_RS02570at 527.026 kb on + strand, within ABID97_RS02570at 527.026 kb on + strand, within ABID97_RS02570at 527.026 kb on + strand, within ABID97_RS02570at 527.026 kb on + strand, within ABID97_RS02570at 527.026 kb on + strand, within ABID97_RS02570at 527.026 kb on + strand, within ABID97_RS02570at 527.026 kb on + strand, within ABID97_RS02570at 527.026 kb on + strand, within ABID97_RS02570at 527.027 kb on - strand, within ABID97_RS02570at 527.027 kb on - strand, within ABID97_RS02570at 527.027 kb on - strand, within ABID97_RS02570at 527.098 kb on + strand, within ABID97_RS02570at 527.098 kb on + strand, within ABID97_RS02570at 527.098 kb on + strand, within ABID97_RS02570at 527.099 kb on - strand, within ABID97_RS02570at 527.099 kb on - strand, within ABID97_RS02570at 527.099 kb on - strandat 527.099 kb on - strand, within ABID97_RS02570at 527.099 kb on - strand, within ABID97_RS02570at 527.113 kb on + strand, within ABID97_RS02570at 527.114 kb on - strand, within ABID97_RS02570at 527.114 kb on - strand, within ABID97_RS02570at 527.114 kb on - strand, within ABID97_RS02570

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate (C)
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524,417 + ABID97_RS02560 0.27 -1.2
524,420 + ABID97_RS02560 0.27 +0.1
524,420 + ABID97_RS02560 0.27 -0.5
524,420 + ABID97_RS02560 0.27 -1.3
524,420 + ABID97_RS02560 0.27 -0.6
524,420 + ABID97_RS02560 0.27 -0.1
524,420 + ABID97_RS02560 0.27 -0.5
524,420 + ABID97_RS02560 0.27 +0.3
524,420 + ABID97_RS02560 0.27 +0.9
524,420 + ABID97_RS02560 0.27 +1.0
524,420 + ABID97_RS02560 0.27 +0.4
524,420 + ABID97_RS02560 0.27 +0.2
524,420 + ABID97_RS02560 0.27 +0.5
524,420 + ABID97_RS02560 0.27 -0.1
524,420 + ABID97_RS02560 0.27 -0.3
524,421 - ABID97_RS02560 0.27 -0.2
524,421 - ABID97_RS02560 0.27 -0.6
524,421 - ABID97_RS02560 0.27 -0.4
524,421 - ABID97_RS02560 0.27 +0.5
524,421 - ABID97_RS02560 0.27 -0.2
524,421 - ABID97_RS02560 0.27 +0.3
524,421 - ABID97_RS02560 0.27 -0.2
524,442 - ABID97_RS02560 0.29 -0.1
524,591 + ABID97_RS02560 0.42 +1.6
524,591 + ABID97_RS02560 0.42 +0.6
524,592 - ABID97_RS02560 0.42 +0.3
524,592 - ABID97_RS02560 0.42 +0.1
524,592 - ABID97_RS02560 0.42 +1.0
524,592 - ABID97_RS02560 0.42 -0.8
524,592 - ABID97_RS02560 0.42 -0.1
524,592 - ABID97_RS02560 0.42 -0.0
524,592 - ABID97_RS02560 0.42 +0.5
524,592 - ABID97_RS02560 0.42 -0.2
525,065 + ABID97_RS02560 0.82 +0.4
525,066 - ABID97_RS02560 0.82 -0.5
525,066 - ABID97_RS02560 0.82 -0.0
525,066 - ABID97_RS02560 0.82 -0.3
525,188 + +0.3
525,188 + -0.2
525,188 + +0.1
525,188 + -1.3
525,189 - +0.4
525,189 - +0.2
525,361 + +0.4
525,361 + -0.3
525,361 + -0.6
525,361 + +0.9
525,361 + +0.2
525,362 - -0.3
525,362 - +0.2
525,362 - -0.1
525,362 - -0.7
525,362 - +0.5
525,362 - +0.6
525,371 + -0.8
525,371 + +0.3
525,371 + +0.8
525,371 + +0.3
525,473 + ABID97_RS02565 0.22 +0.5
525,473 + ABID97_RS02565 0.22 +0.4
525,473 + ABID97_RS02565 0.22 +0.0
525,473 + ABID97_RS02565 0.22 -0.0
525,473 + ABID97_RS02565 0.22 +1.8
525,473 + ABID97_RS02565 0.22 -0.6
525,473 + ABID97_RS02565 0.22 +0.4
525,474 - ABID97_RS02565 0.22 +0.1
525,474 - ABID97_RS02565 0.22 +0.7
526,238 - -0.1
526,238 - +0.5
526,238 - -0.2
526,372 + ABID97_RS02570 0.15 +0.0
526,373 - ABID97_RS02570 0.15 -1.5
526,373 - ABID97_RS02570 0.15 +0.0
526,373 - ABID97_RS02570 0.15 -0.4
526,373 - ABID97_RS02570 0.15 -0.1
526,499 - ABID97_RS02570 0.23 -0.4
526,594 + ABID97_RS02570 0.30 +0.3
526,594 + ABID97_RS02570 0.30 +0.5
526,595 - ABID97_RS02570 0.30 +0.3
526,595 - ABID97_RS02570 0.30 +0.1
526,595 - ABID97_RS02570 0.30 +1.1
526,595 - ABID97_RS02570 0.30 -0.4
526,744 + ABID97_RS02570 0.40 -0.4
526,744 + ABID97_RS02570 0.40 -0.2
526,744 + ABID97_RS02570 0.40 -0.6
526,744 + ABID97_RS02570 0.40 -0.1
526,745 - ABID97_RS02570 0.40 +0.1
526,745 - ABID97_RS02570 0.40 +0.3
526,745 - ABID97_RS02570 0.40 +0.1
526,768 + ABID97_RS02570 0.41 +0.2
526,768 + ABID97_RS02570 0.41 -0.1
526,768 + ABID97_RS02570 0.41 +0.5
526,768 + ABID97_RS02570 0.41 -0.7
526,769 - ABID97_RS02570 0.41 +0.6
526,769 - ABID97_RS02570 0.41 -1.0
526,769 - ABID97_RS02570 0.41 +0.0
526,769 - ABID97_RS02570 0.41 -0.0
526,769 - ABID97_RS02570 0.41 +0.4
527,026 + ABID97_RS02570 0.58 -0.1
527,026 + ABID97_RS02570 0.58 +0.2
527,026 + ABID97_RS02570 0.58 -0.1
527,026 + ABID97_RS02570 0.58 +0.8
527,026 + ABID97_RS02570 0.58 +0.2
527,026 + ABID97_RS02570 0.58 -0.1
527,026 + ABID97_RS02570 0.58 +0.3
527,026 + ABID97_RS02570 0.58 +0.0
527,026 + ABID97_RS02570 0.58 -0.6
527,026 + ABID97_RS02570 0.58 -0.2
527,027 - ABID97_RS02570 0.58 -0.8
527,027 - ABID97_RS02570 0.58 -0.3
527,027 - ABID97_RS02570 0.58 +0.3
527,098 + ABID97_RS02570 0.63 +0.4
527,098 + ABID97_RS02570 0.63 -0.1
527,098 + ABID97_RS02570 0.63 -0.2
527,099 - ABID97_RS02570 0.63 +0.3
527,099 - ABID97_RS02570 0.63 +0.9
527,099 - +1.9
527,099 - ABID97_RS02570 0.63 -0.3
527,099 - ABID97_RS02570 0.63 -0.0
527,113 + ABID97_RS02570 0.64 +0.3
527,114 - ABID97_RS02570 0.64 +0.1
527,114 - ABID97_RS02570 0.64 +0.2
527,114 - ABID97_RS02570 0.64 +0.2

Or see this region's nucleotide sequence