Strain Fitness in Escherichia coli BW25113 around b2184

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntbcr and rsuA are separated by 27 nucleotidesrsuA and yejH are separated by 148 nucleotidesyejH and rplY are separated by 124 nucleotidesrplY and yejK are separated by 138 nucleotides b2182: bcr - bicyclomycin/multidrug efflux system (NCBI), at 2,276,592 to 2,277,782 bcr b2183: rsuA - 16S rRNA pseudouridylate 516 synthase (NCBI), at 2,277,810 to 2,278,505 rsuA b2184: yejH - DNA damage response helicase (yejH or radD) (from data), at 2,278,654 to 2,280,414 yejH b2185: rplY - 50S ribosomal protein L25 (NCBI), at 2,280,539 to 2,280,823 rplY b2186: yejK - nucleoid-associated protein NdpA (NCBI), at 2,280,962 to 2,281,969 yejK Position (kb) 2278 2279 2280 2281Strain fitness (log2 ratio) -1 0 1at 2277.695 kb on + strandat 2277.695 kb on + strandat 2277.696 kb on + strandat 2277.759 kb on + strandat 2277.767 kb on + strandat 2278.002 kb on - strand, within rsuAat 2278.018 kb on - strand, within rsuAat 2278.126 kb on - strand, within rsuAat 2278.173 kb on + strand, within rsuAat 2278.266 kb on - strand, within rsuAat 2278.285 kb on - strand, within rsuAat 2278.462 kb on - strandat 2278.560 kb on - strandat 2278.678 kb on - strandat 2278.720 kb on + strandat 2278.720 kb on + strandat 2278.785 kb on + strandat 2278.785 kb on + strandat 2278.824 kb on + strandat 2278.824 kb on + strandat 2278.834 kb on - strand, within yejHat 2278.845 kb on + strand, within yejHat 2278.897 kb on + strand, within yejHat 2279.324 kb on - strand, within yejHat 2279.324 kb on - strand, within yejHat 2279.480 kb on + strand, within yejHat 2279.600 kb on - strand, within yejHat 2279.622 kb on - strand, within yejHat 2279.622 kb on - strand, within yejHat 2279.648 kb on + strand, within yejHat 2279.858 kb on - strand, within yejHat 2279.895 kb on + strand, within yejHat 2279.895 kb on + strand, within yejHat 2279.967 kb on - strand, within yejHat 2280.065 kb on + strand, within yejHat 2280.078 kb on - strand, within yejHat 2280.078 kb on - strand, within yejHat 2280.080 kb on + strand, within yejHat 2280.148 kb on + strand, within yejHat 2280.161 kb on + strand, within yejHat 2280.214 kb on - strand, within yejHat 2280.240 kb on + strandat 2280.266 kb on - strandat 2280.943 kb on + strandat 2281.099 kb on - strand, within yejKat 2281.099 kb on - strand, within yejKat 2281.135 kb on + strand, within yejKat 2281.166 kb on - strand, within yejKat 2281.166 kb on - strand, within yejKat 2281.253 kb on + strand, within yejKat 2281.255 kb on + strand, within yejKat 2281.263 kb on + strand, within yejKat 2281.263 kb on + strand, within yejKat 2281.284 kb on - strand, within yejKat 2281.284 kb on - strand, within yejKat 2281.286 kb on + strand, within yejKat 2281.294 kb on - strand, within yejKat 2281.323 kb on - strand, within yejKat 2281.325 kb on + strand, within yejKat 2281.347 kb on + strand, within yejKat 2281.377 kb on - strand, within yejK

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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2,277,695 + -0.2
2,277,695 + +0.2
2,277,696 + -0.2
2,277,759 + -0.2
2,277,767 + -0.4
2,278,002 - rsuA b2183 0.28 +1.0
2,278,018 - rsuA b2183 0.30 +0.9
2,278,126 - rsuA b2183 0.45 -0.7
2,278,173 + rsuA b2183 0.52 -0.6
2,278,266 - rsuA b2183 0.66 -0.3
2,278,285 - rsuA b2183 0.68 +1.4
2,278,462 - -0.4
2,278,560 - +0.6
2,278,678 - +0.6
2,278,720 + -0.2
2,278,720 + +0.2
2,278,785 + +0.4
2,278,785 + -0.4
2,278,824 + -0.0
2,278,824 + +1.7
2,278,834 - yejH b2184 0.10 -0.2
2,278,845 + yejH b2184 0.11 -0.3
2,278,897 + yejH b2184 0.14 +0.3
2,279,324 - yejH b2184 0.38 +0.2
2,279,324 - yejH b2184 0.38 -0.6
2,279,480 + yejH b2184 0.47 -0.0
2,279,600 - yejH b2184 0.54 -0.2
2,279,622 - yejH b2184 0.55 +0.2
2,279,622 - yejH b2184 0.55 -0.6
2,279,648 + yejH b2184 0.56 -0.7
2,279,858 - yejH b2184 0.68 -0.4
2,279,895 + yejH b2184 0.70 +0.8
2,279,895 + yejH b2184 0.70 +1.2
2,279,967 - yejH b2184 0.75 +0.5
2,280,065 + yejH b2184 0.80 -0.3
2,280,078 - yejH b2184 0.81 -0.8
2,280,078 - yejH b2184 0.81 -0.2
2,280,080 + yejH b2184 0.81 +0.2
2,280,148 + yejH b2184 0.85 -1.6
2,280,161 + yejH b2184 0.86 +0.3
2,280,214 - yejH b2184 0.89 -0.5
2,280,240 + -0.8
2,280,266 - +0.1
2,280,943 + +0.3
2,281,099 - yejK b2186 0.14 +0.7
2,281,099 - yejK b2186 0.14 +0.6
2,281,135 + yejK b2186 0.17 +0.3
2,281,166 - yejK b2186 0.20 +0.4
2,281,166 - yejK b2186 0.20 +0.3
2,281,253 + yejK b2186 0.29 +0.8
2,281,255 + yejK b2186 0.29 +0.6
2,281,263 + yejK b2186 0.30 +0.8
2,281,263 + yejK b2186 0.30 +0.5
2,281,284 - yejK b2186 0.32 -0.2
2,281,284 - yejK b2186 0.32 +0.3
2,281,286 + yejK b2186 0.32 -0.6
2,281,294 - yejK b2186 0.33 -0.6
2,281,323 - yejK b2186 0.36 +0.2
2,281,325 + yejK b2186 0.36 +0.5
2,281,347 + yejK b2186 0.38 -1.2
2,281,377 - yejK b2186 0.41 +0.6

Or see this region's nucleotide sequence