Experiment: KB with Acriflavine 1.25 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4958 and Psyr_4959 are separated by 25 nucleotides Psyr_4959 and Psyr_4960 overlap by 4 nucleotides Psyr_4960 and Psyr_4961 overlap by 4 nucleotides Psyr_4961 and Psyr_4962 are separated by 30 nucleotides
Psyr_4958: Psyr_4958 - AAA ATPase, central region:Clp, N terminal:Clp, N terminal, at 5,876,740 to 5,879,343
_4958
Psyr_4959: Psyr_4959 - conserved hypothetical protein, at 5,879,369 to 5,880,124
_4959
Psyr_4960: Psyr_4960 - protein of unknown function DUF876, at 5,880,121 to 5,881,464
_4960
Psyr_4961: Psyr_4961 - conserved hypothetical protein, at 5,881,461 to 5,882,174
_4961
Psyr_4962: Psyr_4962 - ImcF-related:Protein of unknown function DUF1215, at 5,882,205 to 5,886,137
_4962
Position (kb) 5880
5881
5882 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5879.329 kb on + strand at 5879.356 kb on + strand at 5879.357 kb on - strand at 5879.357 kb on - strand at 5879.357 kb on - strand at 5879.357 kb on - strand at 5879.360 kb on + strand at 5879.360 kb on + strand at 5879.360 kb on + strand at 5879.360 kb on + strand at 5879.360 kb on + strand at 5879.361 kb on - strand at 5879.361 kb on - strand at 5879.367 kb on + strand at 5879.368 kb on - strand at 5879.368 kb on - strand at 5879.374 kb on + strand at 5879.374 kb on + strand at 5879.582 kb on + strand, within Psyr_4959 at 5879.616 kb on - strand, within Psyr_4959 at 5879.777 kb on + strand, within Psyr_4959 at 5879.777 kb on + strand, within Psyr_4959 at 5879.778 kb on - strand, within Psyr_4959 at 5879.778 kb on - strand, within Psyr_4959 at 5879.778 kb on - strand, within Psyr_4959 at 5879.778 kb on - strand, within Psyr_4959 at 5879.778 kb on - strand, within Psyr_4959 at 5879.778 kb on - strand, within Psyr_4959 at 5879.778 kb on - strand, within Psyr_4959 at 5879.778 kb on - strand, within Psyr_4959 at 5879.863 kb on + strand, within Psyr_4959 at 5879.864 kb on - strand, within Psyr_4959 at 5879.909 kb on + strand, within Psyr_4959 at 5879.909 kb on + strand, within Psyr_4959 at 5879.909 kb on + strand, within Psyr_4959 at 5879.909 kb on + strand, within Psyr_4959 at 5879.909 kb on + strand, within Psyr_4959 at 5879.909 kb on + strand, within Psyr_4959 at 5879.909 kb on + strand, within Psyr_4959 at 5879.909 kb on + strand, within Psyr_4959 at 5879.909 kb on + strand, within Psyr_4959 at 5879.909 kb on + strand, within Psyr_4959 at 5879.909 kb on + strand, within Psyr_4959 at 5879.909 kb on + strand, within Psyr_4959 at 5879.909 kb on + strand, within Psyr_4959 at 5879.910 kb on - strand, within Psyr_4959 at 5879.910 kb on - strand, within Psyr_4959 at 5879.910 kb on - strand, within Psyr_4959 at 5879.910 kb on - strand, within Psyr_4959 at 5879.910 kb on - strand, within Psyr_4959 at 5879.910 kb on - strand, within Psyr_4959 at 5879.910 kb on - strand, within Psyr_4959 at 5879.910 kb on - strand, within Psyr_4959 at 5879.910 kb on - strand, within Psyr_4959 at 5879.910 kb on - strand, within Psyr_4959 at 5879.910 kb on - strand, within Psyr_4959 at 5879.910 kb on - strand, within Psyr_4959 at 5879.910 kb on - strand, within Psyr_4959 at 5879.910 kb on - strand, within Psyr_4959 at 5879.910 kb on - strand, within Psyr_4959 at 5880.010 kb on + strand, within Psyr_4959 at 5880.010 kb on + strand, within Psyr_4959 at 5880.010 kb on + strand, within Psyr_4959 at 5880.011 kb on - strand, within Psyr_4959 at 5880.126 kb on + strand at 5880.185 kb on - strand at 5880.460 kb on + strand, within Psyr_4960 at 5880.461 kb on - strand, within Psyr_4960 at 5880.461 kb on - strand, within Psyr_4960 at 5880.461 kb on - strand, within Psyr_4960 at 5880.461 kb on - strand, within Psyr_4960 at 5880.613 kb on + strand, within Psyr_4960 at 5880.613 kb on + strand, within Psyr_4960 at 5880.614 kb on - strand, within Psyr_4960 at 5880.619 kb on + strand, within Psyr_4960 at 5880.619 kb on + strand, within Psyr_4960 at 5880.620 kb on - strand, within Psyr_4960 at 5880.620 kb on - strand, within Psyr_4960 at 5880.620 kb on - strand, within Psyr_4960 at 5880.922 kb on + strand, within Psyr_4960 at 5880.922 kb on + strand, within Psyr_4960 at 5880.922 kb on + strand, within Psyr_4960 at 5880.923 kb on - strand, within Psyr_4960 at 5881.117 kb on + strand, within Psyr_4960 at 5881.118 kb on - strand, within Psyr_4960 at 5881.165 kb on + strand, within Psyr_4960 at 5881.165 kb on + strand, within Psyr_4960 at 5881.165 kb on + strand, within Psyr_4960 at 5881.165 kb on + strand, within Psyr_4960 at 5881.166 kb on - strand, within Psyr_4960 at 5881.166 kb on - strand, within Psyr_4960 at 5881.166 kb on - strand, within Psyr_4960 at 5881.166 kb on - strand, within Psyr_4960 at 5881.342 kb on + strand at 5881.342 kb on + strand at 5881.342 kb on + strand at 5881.342 kb on + strand at 5881.343 kb on - strand at 5881.343 kb on - strand at 5881.343 kb on - strand at 5881.343 kb on - strand at 5881.343 kb on - strand at 5881.343 kb on - strand at 5881.343 kb on - strand at 5881.343 kb on - strand at 5881.343 kb on - strand at 5881.409 kb on - strand at 5881.409 kb on - strand at 5881.425 kb on + strand at 5881.458 kb on + strand at 5881.458 kb on + strand at 5881.458 kb on + strand at 5881.459 kb on - strand at 5881.459 kb on - strand at 5881.459 kb on - strand at 5881.459 kb on - strand at 5881.459 kb on - strand at 5881.511 kb on + strand at 5881.511 kb on + strand at 5881.511 kb on + strand at 5881.610 kb on + strand, within Psyr_4961 at 5881.653 kb on + strand, within Psyr_4961 at 5881.653 kb on + strand, within Psyr_4961 at 5881.653 kb on + strand, within Psyr_4961 at 5881.653 kb on + strand, within Psyr_4961 at 5881.654 kb on - strand, within Psyr_4961 at 5881.654 kb on - strand, within Psyr_4961 at 5881.654 kb on - strand, within Psyr_4961 at 5881.654 kb on - strand, within Psyr_4961 at 5881.869 kb on + strand, within Psyr_4961 at 5881.870 kb on - strand, within Psyr_4961 at 5881.870 kb on - strand, within Psyr_4961 at 5882.062 kb on - strand, within Psyr_4961 at 5882.062 kb on - strand, within Psyr_4961 at 5882.062 kb on - strand, within Psyr_4961 at 5882.062 kb on - strand, within Psyr_4961 at 5882.083 kb on + strand, within Psyr_4961 at 5882.084 kb on - strand, within Psyr_4961 at 5882.097 kb on + strand, within Psyr_4961 at 5882.098 kb on - strand, within Psyr_4961 at 5882.215 kb on + strand at 5882.215 kb on + strand at 5882.216 kb on - strand at 5882.216 kb on - strand at 5882.319 kb on + strand at 5882.319 kb on + strand at 5882.320 kb on - strand at 5882.320 kb on - strand at 5882.356 kb on - strand at 5882.371 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Acriflavine 1.25 ug/ml remove 5,879,329 + +0.6 5,879,356 + +1.8 5,879,357 - +0.0 5,879,357 - +0.1 5,879,357 - +1.6 5,879,357 - -0.3 5,879,360 + +0.4 5,879,360 + -2.2 5,879,360 + +0.2 5,879,360 + +0.3 5,879,360 + -0.7 5,879,361 - -1.8 5,879,361 - +0.5 5,879,367 + +0.3 5,879,368 - -0.1 5,879,368 - -1.7 5,879,374 + +0.3 5,879,374 + -0.4 5,879,582 + Psyr_4959 0.28 -0.1 5,879,616 - Psyr_4959 0.33 -0.7 5,879,777 + Psyr_4959 0.54 -0.4 5,879,777 + Psyr_4959 0.54 +0.2 5,879,778 - Psyr_4959 0.54 -0.2 5,879,778 - Psyr_4959 0.54 -0.1 5,879,778 - Psyr_4959 0.54 -2.5 5,879,778 - Psyr_4959 0.54 -0.2 5,879,778 - Psyr_4959 0.54 -0.6 5,879,778 - Psyr_4959 0.54 -0.2 5,879,778 - Psyr_4959 0.54 -0.1 5,879,778 - Psyr_4959 0.54 -1.3 5,879,863 + Psyr_4959 0.65 -1.1 5,879,864 - Psyr_4959 0.65 -1.0 5,879,909 + Psyr_4959 0.71 +0.2 5,879,909 + Psyr_4959 0.71 -0.8 5,879,909 + Psyr_4959 0.71 -0.1 5,879,909 + Psyr_4959 0.71 -0.3 5,879,909 + Psyr_4959 0.71 +0.5 5,879,909 + Psyr_4959 0.71 +0.5 5,879,909 + Psyr_4959 0.71 +0.4 5,879,909 + Psyr_4959 0.71 -1.9 5,879,909 + Psyr_4959 0.71 -0.9 5,879,909 + Psyr_4959 0.71 +0.4 5,879,909 + Psyr_4959 0.71 +1.2 5,879,909 + Psyr_4959 0.71 -0.5 5,879,909 + Psyr_4959 0.71 -1.3 5,879,910 - Psyr_4959 0.72 -1.2 5,879,910 - Psyr_4959 0.72 -0.1 5,879,910 - Psyr_4959 0.72 -0.2 5,879,910 - Psyr_4959 0.72 +0.3 5,879,910 - Psyr_4959 0.72 -0.2 5,879,910 - Psyr_4959 0.72 -0.2 5,879,910 - Psyr_4959 0.72 -1.4 5,879,910 - Psyr_4959 0.72 +0.6 5,879,910 - Psyr_4959 0.72 +0.7 5,879,910 - Psyr_4959 0.72 -0.8 5,879,910 - Psyr_4959 0.72 -0.9 5,879,910 - Psyr_4959 0.72 +0.3 5,879,910 - Psyr_4959 0.72 -0.1 5,879,910 - Psyr_4959 0.72 -0.7 5,879,910 - Psyr_4959 0.72 +0.5 5,880,010 + Psyr_4959 0.85 +0.3 5,880,010 + Psyr_4959 0.85 -0.5 5,880,010 + Psyr_4959 0.85 -1.4 5,880,011 - Psyr_4959 0.85 -0.3 5,880,126 + +0.5 5,880,185 - +0.4 5,880,460 + Psyr_4960 0.25 -1.3 5,880,461 - Psyr_4960 0.25 +0.1 5,880,461 - Psyr_4960 0.25 -0.5 5,880,461 - Psyr_4960 0.25 -0.6 5,880,461 - Psyr_4960 0.25 -2.5 5,880,613 + Psyr_4960 0.37 +0.4 5,880,613 + Psyr_4960 0.37 -1.2 5,880,614 - Psyr_4960 0.37 -1.1 5,880,619 + Psyr_4960 0.37 -2.8 5,880,619 + Psyr_4960 0.37 +1.3 5,880,620 - Psyr_4960 0.37 +0.1 5,880,620 - Psyr_4960 0.37 +0.1 5,880,620 - Psyr_4960 0.37 -0.2 5,880,922 + Psyr_4960 0.60 +0.7 5,880,922 + Psyr_4960 0.60 -0.8 5,880,922 + Psyr_4960 0.60 -0.3 5,880,923 - Psyr_4960 0.60 +0.1 5,881,117 + Psyr_4960 0.74 -0.9 5,881,118 - Psyr_4960 0.74 -0.0 5,881,165 + Psyr_4960 0.78 +0.3 5,881,165 + Psyr_4960 0.78 +0.1 5,881,165 + Psyr_4960 0.78 +0.4 5,881,165 + Psyr_4960 0.78 -0.1 5,881,166 - Psyr_4960 0.78 +0.9 5,881,166 - Psyr_4960 0.78 +1.2 5,881,166 - Psyr_4960 0.78 -0.1 5,881,166 - Psyr_4960 0.78 -1.2 5,881,342 + +0.2 5,881,342 + -0.3 5,881,342 + -0.1 5,881,342 + +0.1 5,881,343 - +0.2 5,881,343 - +1.7 5,881,343 - +0.9 5,881,343 - +1.1 5,881,343 - +0.3 5,881,343 - -0.1 5,881,343 - -1.3 5,881,343 - -0.7 5,881,343 - +0.7 5,881,409 - -0.2 5,881,409 - +0.3 5,881,425 + -0.0 5,881,458 + -1.2 5,881,458 + -1.7 5,881,458 + +0.9 5,881,459 - -1.2 5,881,459 - -0.3 5,881,459 - +0.2 5,881,459 - -0.5 5,881,459 - +0.4 5,881,511 + +1.2 5,881,511 + -0.3 5,881,511 + +0.3 5,881,610 + Psyr_4961 0.21 -0.1 5,881,653 + Psyr_4961 0.27 -0.2 5,881,653 + Psyr_4961 0.27 -1.3 5,881,653 + Psyr_4961 0.27 -1.9 5,881,653 + Psyr_4961 0.27 -1.7 5,881,654 - Psyr_4961 0.27 -1.1 5,881,654 - Psyr_4961 0.27 -0.4 5,881,654 - Psyr_4961 0.27 +0.7 5,881,654 - Psyr_4961 0.27 +1.5 5,881,869 + Psyr_4961 0.57 +0.3 5,881,870 - Psyr_4961 0.57 -0.1 5,881,870 - Psyr_4961 0.57 +0.9 5,882,062 - Psyr_4961 0.84 +1.0 5,882,062 - Psyr_4961 0.84 -0.9 5,882,062 - Psyr_4961 0.84 +1.5 5,882,062 - Psyr_4961 0.84 -0.7 5,882,083 + Psyr_4961 0.87 -0.3 5,882,084 - Psyr_4961 0.87 -1.5 5,882,097 + Psyr_4961 0.89 -0.3 5,882,098 - Psyr_4961 0.89 -1.1 5,882,215 + -0.4 5,882,215 + +0.3 5,882,216 - -2.0 5,882,216 - -0.4 5,882,319 + +0.5 5,882,319 + +0.0 5,882,320 - +0.4 5,882,320 - +0.5 5,882,356 - -0.2 5,882,371 + -0.3
Or see this region's nucleotide sequence