Experiment: KB with Acriflavine 1.25 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4671 and Psyr_4672 are separated by 8 nucleotides Psyr_4672 and Psyr_4673 overlap by 4 nucleotides Psyr_4673 and Psyr_4674 overlap by 8 nucleotides
Psyr_4671: Psyr_4671 - coenzyme PQQ synthesis protein B, at 5,537,417 to 5,538,328
_4671
Psyr_4672: Psyr_4672 - Coenzyme PQQ synthesis C, at 5,538,337 to 5,539,092
_4672
Psyr_4673: Psyr_4673 - Coenzyme PQQ synthesis D, at 5,539,089 to 5,539,373
_4673
Psyr_4674: Psyr_4674 - Radical SAM, at 5,539,366 to 5,540,535
_4674
Position (kb) 5538
5539
5540 Strain fitness (log2 ratio) -2
-1
0
1 at 5537.420 kb on + strand at 5537.420 kb on + strand at 5537.420 kb on + strand at 5537.420 kb on + strand at 5537.420 kb on + strand at 5537.420 kb on + strand at 5537.420 kb on + strand at 5537.420 kb on + strand at 5537.420 kb on + strand at 5537.420 kb on + strand at 5537.420 kb on + strand at 5537.420 kb on + strand at 5537.420 kb on + strand at 5537.420 kb on + strand at 5537.420 kb on + strand at 5537.421 kb on - strand at 5537.421 kb on - strand at 5537.421 kb on - strand at 5537.421 kb on - strand at 5537.421 kb on - strand at 5537.421 kb on - strand at 5537.421 kb on - strand at 5537.421 kb on - strand at 5537.421 kb on - strand at 5537.421 kb on - strand at 5537.421 kb on - strand at 5537.433 kb on + strand at 5537.433 kb on + strand at 5537.433 kb on + strand at 5537.919 kb on - strand, within Psyr_4671 at 5538.002 kb on + strand, within Psyr_4671 at 5538.002 kb on + strand, within Psyr_4671 at 5538.002 kb on + strand, within Psyr_4671 at 5538.002 kb on + strand, within Psyr_4671 at 5538.002 kb on + strand, within Psyr_4671 at 5538.002 kb on + strand, within Psyr_4671 at 5538.002 kb on + strand, within Psyr_4671 at 5538.003 kb on - strand, within Psyr_4671 at 5538.003 kb on - strand, within Psyr_4671 at 5538.003 kb on - strand, within Psyr_4671 at 5538.003 kb on - strand, within Psyr_4671 at 5538.003 kb on - strand, within Psyr_4671 at 5538.003 kb on - strand, within Psyr_4671 at 5538.401 kb on - strand at 5538.401 kb on - strand at 5538.403 kb on + strand at 5538.403 kb on + strand at 5538.404 kb on - strand at 5538.404 kb on - strand at 5538.404 kb on - strand at 5538.404 kb on - strand at 5538.404 kb on - strand at 5538.412 kb on + strand at 5538.412 kb on + strand at 5538.412 kb on + strand at 5538.412 kb on + strand at 5538.412 kb on + strand at 5538.412 kb on + strand at 5538.413 kb on - strand, within Psyr_4672 at 5538.413 kb on - strand, within Psyr_4672 at 5538.413 kb on - strand, within Psyr_4672 at 5538.413 kb on - strand, within Psyr_4672 at 5538.413 kb on - strand, within Psyr_4672 at 5538.413 kb on - strand, within Psyr_4672 at 5538.413 kb on - strand, within Psyr_4672 at 5538.413 kb on - strand, within Psyr_4672 at 5538.436 kb on + strand, within Psyr_4672 at 5538.437 kb on - strand, within Psyr_4672 at 5538.437 kb on - strand, within Psyr_4672 at 5538.437 kb on - strand, within Psyr_4672 at 5538.437 kb on - strand, within Psyr_4672 at 5538.437 kb on - strand, within Psyr_4672 at 5538.490 kb on + strand, within Psyr_4672 at 5538.494 kb on - strand, within Psyr_4672 at 5538.494 kb on - strand, within Psyr_4672 at 5538.853 kb on + strand, within Psyr_4672 at 5538.853 kb on + strand, within Psyr_4672 at 5538.859 kb on + strand, within Psyr_4672 at 5538.859 kb on + strand, within Psyr_4672 at 5538.859 kb on + strand, within Psyr_4672 at 5538.859 kb on + strand, within Psyr_4672 at 5538.928 kb on + strand, within Psyr_4672 at 5538.928 kb on + strand, within Psyr_4672 at 5538.928 kb on + strand, within Psyr_4672 at 5538.928 kb on + strand, within Psyr_4672 at 5538.928 kb on + strand, within Psyr_4672 at 5538.928 kb on + strand, within Psyr_4672 at 5538.928 kb on + strand, within Psyr_4672 at 5538.929 kb on - strand, within Psyr_4672 at 5538.929 kb on - strand, within Psyr_4672 at 5538.929 kb on - strand, within Psyr_4672 at 5538.929 kb on - strand, within Psyr_4672 at 5538.929 kb on - strand, within Psyr_4672 at 5538.933 kb on + strand, within Psyr_4672 at 5538.933 kb on + strand, within Psyr_4672 at 5538.933 kb on + strand, within Psyr_4672 at 5538.933 kb on + strand, within Psyr_4672 at 5538.933 kb on + strand, within Psyr_4672 at 5538.933 kb on + strand, within Psyr_4672 at 5538.933 kb on + strand, within Psyr_4672 at 5538.933 kb on + strand, within Psyr_4672 at 5538.933 kb on + strand, within Psyr_4672 at 5538.933 kb on + strand, within Psyr_4672 at 5538.933 kb on + strand, within Psyr_4672 at 5538.934 kb on - strand, within Psyr_4672 at 5538.934 kb on - strand, within Psyr_4672 at 5538.934 kb on - strand, within Psyr_4672 at 5538.937 kb on + strand, within Psyr_4672 at 5538.937 kb on + strand, within Psyr_4672 at 5538.937 kb on + strand, within Psyr_4672 at 5538.938 kb on - strand, within Psyr_4672 at 5538.954 kb on + strand, within Psyr_4672 at 5538.954 kb on + strand, within Psyr_4672 at 5538.954 kb on + strand, within Psyr_4672 at 5538.954 kb on + strand, within Psyr_4672 at 5538.955 kb on - strand, within Psyr_4672 at 5538.955 kb on - strand, within Psyr_4672 at 5538.955 kb on - strand, within Psyr_4672 at 5538.955 kb on - strand, within Psyr_4672 at 5539.043 kb on - strand at 5539.089 kb on - strand at 5539.376 kb on + strand at 5539.376 kb on + strand at 5539.376 kb on + strand at 5539.376 kb on + strand at 5539.377 kb on - strand at 5539.377 kb on - strand at 5539.377 kb on - strand at 5539.377 kb on - strand at 5539.377 kb on - strand at 5539.377 kb on - strand at 5539.400 kb on - strand at 5539.400 kb on - strand at 5539.400 kb on - strand at 5539.400 kb on - strand at 5539.400 kb on - strand at 5539.400 kb on - strand at 5539.404 kb on - strand at 5539.457 kb on - strand at 5539.481 kb on - strand at 5539.661 kb on - strand, within Psyr_4674 at 5539.661 kb on - strand, within Psyr_4674 at 5539.661 kb on - strand, within Psyr_4674 at 5539.966 kb on + strand, within Psyr_4674 at 5539.966 kb on + strand, within Psyr_4674 at 5539.967 kb on - strand, within Psyr_4674 at 5539.967 kb on - strand, within Psyr_4674 at 5539.967 kb on - strand, within Psyr_4674 at 5539.967 kb on - strand, within Psyr_4674 at 5539.967 kb on - strand, within Psyr_4674 at 5539.967 kb on - strand, within Psyr_4674
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Acriflavine 1.25 ug/ml remove 5,537,420 + -1.6 5,537,420 + -0.7 5,537,420 + -1.7 5,537,420 + +1.7 5,537,420 + -1.2 5,537,420 + +0.4 5,537,420 + +0.2 5,537,420 + -0.3 5,537,420 + -1.8 5,537,420 + +0.5 5,537,420 + +0.2 5,537,420 + +0.4 5,537,420 + +0.7 5,537,420 + +0.7 5,537,420 + +1.4 5,537,421 - +0.6 5,537,421 - +0.7 5,537,421 - -0.1 5,537,421 - -1.9 5,537,421 - -0.1 5,537,421 - -0.6 5,537,421 - -0.8 5,537,421 - +0.1 5,537,421 - +0.5 5,537,421 - +1.5 5,537,421 - -1.7 5,537,433 + -0.9 5,537,433 + +1.2 5,537,433 + +0.2 5,537,919 - Psyr_4671 0.55 -0.9 5,538,002 + Psyr_4671 0.64 +0.9 5,538,002 + Psyr_4671 0.64 -1.6 5,538,002 + Psyr_4671 0.64 +0.5 5,538,002 + Psyr_4671 0.64 +0.8 5,538,002 + Psyr_4671 0.64 +0.2 5,538,002 + Psyr_4671 0.64 +0.5 5,538,002 + Psyr_4671 0.64 +0.4 5,538,003 - Psyr_4671 0.64 -0.4 5,538,003 - Psyr_4671 0.64 -0.1 5,538,003 - Psyr_4671 0.64 -1.1 5,538,003 - Psyr_4671 0.64 +0.4 5,538,003 - Psyr_4671 0.64 +0.8 5,538,003 - Psyr_4671 0.64 +0.4 5,538,401 - +1.0 5,538,401 - +0.2 5,538,403 + +0.9 5,538,403 + +0.0 5,538,404 - -0.4 5,538,404 - -1.1 5,538,404 - -0.6 5,538,404 - -0.3 5,538,404 - +0.3 5,538,412 + -0.0 5,538,412 + -0.3 5,538,412 + -1.2 5,538,412 + +0.7 5,538,412 + +1.3 5,538,412 + +0.4 5,538,413 - Psyr_4672 0.10 -0.9 5,538,413 - Psyr_4672 0.10 -0.1 5,538,413 - Psyr_4672 0.10 +0.3 5,538,413 - Psyr_4672 0.10 -0.8 5,538,413 - Psyr_4672 0.10 -0.7 5,538,413 - Psyr_4672 0.10 +1.2 5,538,413 - Psyr_4672 0.10 -0.2 5,538,413 - Psyr_4672 0.10 -1.0 5,538,436 + Psyr_4672 0.13 +0.7 5,538,437 - Psyr_4672 0.13 -0.4 5,538,437 - Psyr_4672 0.13 +1.2 5,538,437 - Psyr_4672 0.13 -0.7 5,538,437 - Psyr_4672 0.13 +0.8 5,538,437 - Psyr_4672 0.13 -2.5 5,538,490 + Psyr_4672 0.20 -0.7 5,538,494 - Psyr_4672 0.21 -0.0 5,538,494 - Psyr_4672 0.21 -1.4 5,538,853 + Psyr_4672 0.68 -0.5 5,538,853 + Psyr_4672 0.68 +0.6 5,538,859 + Psyr_4672 0.69 -0.9 5,538,859 + Psyr_4672 0.69 +0.6 5,538,859 + Psyr_4672 0.69 -0.2 5,538,859 + Psyr_4672 0.69 -0.1 5,538,928 + Psyr_4672 0.78 +0.7 5,538,928 + Psyr_4672 0.78 +1.4 5,538,928 + Psyr_4672 0.78 -0.6 5,538,928 + Psyr_4672 0.78 +1.2 5,538,928 + Psyr_4672 0.78 -0.5 5,538,928 + Psyr_4672 0.78 +0.7 5,538,928 + Psyr_4672 0.78 -0.7 5,538,929 - Psyr_4672 0.78 +1.5 5,538,929 - Psyr_4672 0.78 -0.1 5,538,929 - Psyr_4672 0.78 +0.6 5,538,929 - Psyr_4672 0.78 -1.1 5,538,929 - Psyr_4672 0.78 +0.5 5,538,933 + Psyr_4672 0.79 +0.2 5,538,933 + Psyr_4672 0.79 -2.1 5,538,933 + Psyr_4672 0.79 -0.8 5,538,933 + Psyr_4672 0.79 +0.2 5,538,933 + Psyr_4672 0.79 +1.4 5,538,933 + Psyr_4672 0.79 -1.1 5,538,933 + Psyr_4672 0.79 -0.2 5,538,933 + Psyr_4672 0.79 +0.3 5,538,933 + Psyr_4672 0.79 +0.1 5,538,933 + Psyr_4672 0.79 -0.4 5,538,933 + Psyr_4672 0.79 -0.5 5,538,934 - Psyr_4672 0.79 +0.4 5,538,934 - Psyr_4672 0.79 -1.3 5,538,934 - Psyr_4672 0.79 +0.3 5,538,937 + Psyr_4672 0.79 -1.1 5,538,937 + Psyr_4672 0.79 +1.1 5,538,937 + Psyr_4672 0.79 -0.5 5,538,938 - Psyr_4672 0.79 -0.3 5,538,954 + Psyr_4672 0.82 -1.1 5,538,954 + Psyr_4672 0.82 -0.4 5,538,954 + Psyr_4672 0.82 +0.3 5,538,954 + Psyr_4672 0.82 +0.3 5,538,955 - Psyr_4672 0.82 -2.4 5,538,955 - Psyr_4672 0.82 +0.1 5,538,955 - Psyr_4672 0.82 +0.5 5,538,955 - Psyr_4672 0.82 -0.2 5,539,043 - +1.1 5,539,089 - +0.9 5,539,376 + -1.0 5,539,376 + -1.6 5,539,376 + -1.3 5,539,376 + +0.4 5,539,377 - -1.2 5,539,377 - +0.4 5,539,377 - -0.2 5,539,377 - -0.5 5,539,377 - -0.2 5,539,377 - -0.3 5,539,400 - -1.0 5,539,400 - +0.3 5,539,400 - -1.9 5,539,400 - +0.1 5,539,400 - -0.9 5,539,400 - -0.1 5,539,404 - -0.4 5,539,457 - +1.6 5,539,481 - +0.5 5,539,661 - Psyr_4674 0.25 +0.7 5,539,661 - Psyr_4674 0.25 -1.7 5,539,661 - Psyr_4674 0.25 -0.3 5,539,966 + Psyr_4674 0.51 -1.4 5,539,966 + Psyr_4674 0.51 -0.1 5,539,967 - Psyr_4674 0.51 -1.2 5,539,967 - Psyr_4674 0.51 +0.1 5,539,967 - Psyr_4674 0.51 -0.5 5,539,967 - Psyr_4674 0.51 +0.9 5,539,967 - Psyr_4674 0.51 -1.0 5,539,967 - Psyr_4674 0.51 +1.1
Or see this region's nucleotide sequence