Experiment: KB with Acriflavine 1.25 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4290 and Psyr_4291 are separated by 61 nucleotides Psyr_4291 and Psyr_4292 are separated by 877 nucleotides
Psyr_4290: Psyr_4290 - conserved domain protein, at 5,116,745 to 5,117,734
_4290
Psyr_4291: Psyr_4291 - hypothetical protein, at 5,117,796 to 5,118,161
_4291
Psyr_4292: Psyr_4292 - HAD-superfamily hydrolase, subfamily IA, variant 3:HAD-superfamily hydrolase, subfamily IA, variant 1, at 5,119,039 to 5,119,629
_4292
Position (kb) 5117
5118
5119 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5116.961 kb on + strand, within Psyr_4290 at 5117.318 kb on + strand, within Psyr_4290 at 5117.343 kb on - strand, within Psyr_4290 at 5117.343 kb on - strand, within Psyr_4290 at 5117.349 kb on - strand, within Psyr_4290 at 5117.415 kb on - strand, within Psyr_4290 at 5117.477 kb on + strand, within Psyr_4290 at 5117.478 kb on - strand, within Psyr_4290 at 5117.478 kb on - strand, within Psyr_4290 at 5117.498 kb on + strand, within Psyr_4290 at 5117.498 kb on + strand, within Psyr_4290 at 5117.498 kb on + strand, within Psyr_4290 at 5117.499 kb on - strand, within Psyr_4290 at 5117.499 kb on - strand, within Psyr_4290 at 5117.499 kb on - strand, within Psyr_4290 at 5117.499 kb on - strand, within Psyr_4290 at 5117.499 kb on - strand, within Psyr_4290 at 5117.528 kb on - strand, within Psyr_4290 at 5117.601 kb on - strand, within Psyr_4290 at 5117.601 kb on - strand, within Psyr_4290 at 5117.609 kb on + strand, within Psyr_4290 at 5117.610 kb on - strand, within Psyr_4290 at 5117.610 kb on - strand, within Psyr_4290 at 5117.610 kb on - strand, within Psyr_4290 at 5117.745 kb on + strand at 5117.747 kb on + strand at 5117.747 kb on + strand at 5117.747 kb on + strand at 5117.747 kb on + strand at 5117.747 kb on + strand at 5117.747 kb on + strand at 5117.747 kb on + strand at 5117.747 kb on + strand at 5117.747 kb on + strand at 5117.748 kb on - strand at 5117.748 kb on - strand at 5117.748 kb on - strand at 5117.748 kb on - strand at 5117.748 kb on - strand at 5117.748 kb on - strand at 5117.748 kb on - strand at 5117.748 kb on - strand at 5117.748 kb on - strand at 5117.748 kb on - strand at 5117.748 kb on - strand at 5117.748 kb on - strand at 5117.748 kb on - strand at 5117.748 kb on - strand at 5117.748 kb on - strand at 5117.748 kb on - strand at 5117.748 kb on - strand at 5117.751 kb on + strand at 5117.751 kb on + strand at 5117.751 kb on + strand at 5117.751 kb on + strand at 5117.751 kb on + strand at 5117.751 kb on + strand at 5117.751 kb on + strand at 5117.752 kb on - strand at 5117.752 kb on - strand at 5117.752 kb on - strand at 5117.752 kb on - strand at 5117.752 kb on - strand at 5117.779 kb on + strand at 5117.779 kb on + strand at 5117.780 kb on - strand at 5117.784 kb on - strand at 5117.784 kb on - strand at 5117.784 kb on - strand at 5117.784 kb on - strand at 5117.784 kb on - strand at 5117.784 kb on - strand at 5117.784 kb on - strand at 5117.784 kb on - strand at 5117.784 kb on - strand at 5117.784 kb on - strand at 5117.784 kb on - strand at 5117.784 kb on - strand at 5117.784 kb on - strand at 5117.784 kb on - strand at 5117.784 kb on - strand at 5117.784 kb on - strand at 5117.784 kb on - strand at 5117.784 kb on - strand at 5117.784 kb on - strand at 5117.848 kb on + strand, within Psyr_4291 at 5117.849 kb on - strand, within Psyr_4291 at 5117.849 kb on - strand, within Psyr_4291 at 5118.111 kb on + strand, within Psyr_4291 at 5118.111 kb on + strand, within Psyr_4291 at 5118.111 kb on + strand, within Psyr_4291 at 5118.111 kb on + strand, within Psyr_4291 at 5118.111 kb on + strand, within Psyr_4291 at 5118.769 kb on + strand at 5118.769 kb on + strand at 5118.769 kb on + strand at 5118.769 kb on + strand at 5118.769 kb on + strand at 5118.769 kb on + strand at 5118.769 kb on + strand at 5118.770 kb on - strand at 5118.770 kb on - strand at 5118.770 kb on - strand at 5118.770 kb on - strand at 5118.770 kb on - strand at 5118.770 kb on - strand at 5118.770 kb on - strand at 5118.771 kb on + strand at 5118.771 kb on + strand at 5118.771 kb on + strand at 5118.771 kb on + strand at 5118.771 kb on + strand at 5118.771 kb on + strand at 5118.771 kb on + strand at 5118.772 kb on - strand at 5118.772 kb on - strand at 5118.773 kb on + strand at 5118.783 kb on + strand at 5118.783 kb on + strand at 5118.784 kb on - strand at 5118.834 kb on - strand at 5118.834 kb on - strand at 5118.834 kb on - strand at 5118.834 kb on - strand at 5118.946 kb on + strand at 5118.946 kb on + strand at 5118.946 kb on + strand at 5118.948 kb on + strand at 5118.948 kb on + strand at 5118.948 kb on + strand at 5118.950 kb on + strand at 5118.950 kb on + strand at 5118.950 kb on + strand at 5118.950 kb on + strand at 5118.960 kb on + strand at 5118.960 kb on + strand at 5118.960 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Acriflavine 1.25 ug/ml remove 5,116,961 + Psyr_4290 0.22 -0.1 5,117,318 + Psyr_4290 0.58 +0.7 5,117,343 - Psyr_4290 0.60 +1.6 5,117,343 - Psyr_4290 0.60 -1.6 5,117,349 - Psyr_4290 0.61 +0.3 5,117,415 - Psyr_4290 0.68 +2.0 5,117,477 + Psyr_4290 0.74 +1.0 5,117,478 - Psyr_4290 0.74 +1.7 5,117,478 - Psyr_4290 0.74 -0.1 5,117,498 + Psyr_4290 0.76 -0.7 5,117,498 + Psyr_4290 0.76 +0.1 5,117,498 + Psyr_4290 0.76 +0.3 5,117,499 - Psyr_4290 0.76 -0.5 5,117,499 - Psyr_4290 0.76 -0.1 5,117,499 - Psyr_4290 0.76 +0.5 5,117,499 - Psyr_4290 0.76 +1.1 5,117,499 - Psyr_4290 0.76 -0.7 5,117,528 - Psyr_4290 0.79 +0.4 5,117,601 - Psyr_4290 0.86 -0.0 5,117,601 - Psyr_4290 0.86 +1.2 5,117,609 + Psyr_4290 0.87 -0.0 5,117,610 - Psyr_4290 0.87 -0.7 5,117,610 - Psyr_4290 0.87 +1.2 5,117,610 - Psyr_4290 0.87 -0.8 5,117,745 + +0.9 5,117,747 + -0.1 5,117,747 + +1.0 5,117,747 + +0.8 5,117,747 + -0.6 5,117,747 + +0.4 5,117,747 + +0.4 5,117,747 + +0.1 5,117,747 + -0.0 5,117,747 + -0.2 5,117,748 - -1.1 5,117,748 - +0.8 5,117,748 - +0.5 5,117,748 - +0.7 5,117,748 - +1.0 5,117,748 - -0.0 5,117,748 - +1.0 5,117,748 - -0.2 5,117,748 - -0.2 5,117,748 - +1.1 5,117,748 - -0.0 5,117,748 - -0.5 5,117,748 - +0.2 5,117,748 - -1.5 5,117,748 - -1.4 5,117,748 - -0.0 5,117,748 - +1.0 5,117,751 + +0.6 5,117,751 + +0.3 5,117,751 + -0.1 5,117,751 + +0.6 5,117,751 + -0.4 5,117,751 + +1.0 5,117,751 + +1.1 5,117,752 - -0.3 5,117,752 - +0.5 5,117,752 - -0.3 5,117,752 - -0.9 5,117,752 - +0.4 5,117,779 + -0.5 5,117,779 + +0.4 5,117,780 - -1.1 5,117,784 - -1.8 5,117,784 - +1.1 5,117,784 - +0.4 5,117,784 - -0.0 5,117,784 - -0.0 5,117,784 - -0.0 5,117,784 - -0.2 5,117,784 - +0.5 5,117,784 - +0.3 5,117,784 - -0.7 5,117,784 - -0.1 5,117,784 - +1.0 5,117,784 - -0.3 5,117,784 - +0.1 5,117,784 - -0.1 5,117,784 - +0.2 5,117,784 - -0.0 5,117,784 - +0.7 5,117,784 - +1.4 5,117,848 + Psyr_4291 0.14 +1.2 5,117,849 - Psyr_4291 0.14 -0.4 5,117,849 - Psyr_4291 0.14 +0.5 5,118,111 + Psyr_4291 0.86 +0.1 5,118,111 + Psyr_4291 0.86 +0.7 5,118,111 + Psyr_4291 0.86 +0.1 5,118,111 + Psyr_4291 0.86 -0.2 5,118,111 + Psyr_4291 0.86 +1.8 5,118,769 + -1.5 5,118,769 + -0.0 5,118,769 + -0.4 5,118,769 + -0.0 5,118,769 + +0.0 5,118,769 + -1.6 5,118,769 + +0.2 5,118,770 - -0.1 5,118,770 - -0.6 5,118,770 - -0.0 5,118,770 - -0.3 5,118,770 - +1.1 5,118,770 - +0.8 5,118,770 - -1.1 5,118,771 + +3.6 5,118,771 + +0.1 5,118,771 + -0.0 5,118,771 + -0.3 5,118,771 + -0.6 5,118,771 + +0.1 5,118,771 + -0.2 5,118,772 - -1.0 5,118,772 - +0.1 5,118,773 + +0.4 5,118,783 + +1.1 5,118,783 + -2.0 5,118,784 - -2.2 5,118,834 - -0.0 5,118,834 - +0.2 5,118,834 - -1.3 5,118,834 - +0.3 5,118,946 + -0.8 5,118,946 + +0.6 5,118,946 + +3.1 5,118,948 + +0.1 5,118,948 + -1.0 5,118,948 + -1.3 5,118,950 + -0.6 5,118,950 + -0.8 5,118,950 + -0.2 5,118,950 + +1.0 5,118,960 + +0.4 5,118,960 + -1.4 5,118,960 + -1.6
Or see this region's nucleotide sequence