Experiment: KB with Acriflavine 1.25 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4160 and Psyr_4161 are separated by 67 nucleotides Psyr_4161 and Psyr_4162 overlap by 8 nucleotides Psyr_4162 and Psyr_4163 are separated by 231 nucleotides
Psyr_4160: Psyr_4160 - Maf-like protein, at 4,950,137 to 4,950,739
_4160
Psyr_4161: Psyr_4161 - Rod shape-determining protein MreD, at 4,950,807 to 4,951,298
_4161
Psyr_4162: Psyr_4162 - rod shape-determining protein MreC, at 4,951,291 to 4,952,364
_4162
Psyr_4163: Psyr_4163 - rod shape-determining protein MreB, at 4,952,596 to 4,953,633
_4163
Position (kb) 4951
4952
4953 Strain fitness (log2 ratio) -2
-1
0
1 at 4950.374 kb on - strand, within Psyr_4160 at 4950.609 kb on + strand, within Psyr_4160 at 4950.609 kb on + strand, within Psyr_4160 at 4950.610 kb on - strand, within Psyr_4160 at 4950.610 kb on - strand, within Psyr_4160 at 4950.610 kb on - strand, within Psyr_4160 at 4950.610 kb on - strand, within Psyr_4160 at 4950.610 kb on - strand, within Psyr_4160 at 4950.610 kb on - strand, within Psyr_4160 at 4950.610 kb on - strand, within Psyr_4160 at 4950.726 kb on + strand at 4950.726 kb on + strand at 4950.808 kb on + strand at 4950.808 kb on + strand at 4950.808 kb on + strand at 4950.847 kb on + strand at 4950.848 kb on - strand at 4950.966 kb on + strand, within Psyr_4161 at 4951.087 kb on + strand, within Psyr_4161 at 4951.087 kb on + strand, within Psyr_4161 at 4951.135 kb on + strand, within Psyr_4161 at 4951.135 kb on + strand, within Psyr_4161 at 4951.136 kb on - strand, within Psyr_4161 at 4952.410 kb on - strand at 4952.476 kb on - strand at 4952.506 kb on - strand at 4952.538 kb on - strand at 4952.538 kb on - strand at 4952.544 kb on - strand at 4952.544 kb on - strand at 4952.544 kb on - strand at 4952.544 kb on - strand at 4952.544 kb on - strand at 4952.564 kb on - strand at 4952.564 kb on - strand at 4952.564 kb on - strand at 4952.598 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Acriflavine 1.25 ug/ml remove 4,950,374 - Psyr_4160 0.39 +0.3 4,950,609 + Psyr_4160 0.78 -0.1 4,950,609 + Psyr_4160 0.78 -0.3 4,950,610 - Psyr_4160 0.78 -0.1 4,950,610 - Psyr_4160 0.78 -0.1 4,950,610 - Psyr_4160 0.78 -0.0 4,950,610 - Psyr_4160 0.78 -0.8 4,950,610 - Psyr_4160 0.78 -0.6 4,950,610 - Psyr_4160 0.78 -2.3 4,950,610 - Psyr_4160 0.78 -2.6 4,950,726 + +0.3 4,950,726 + -1.9 4,950,808 + -1.6 4,950,808 + +0.8 4,950,808 + -0.4 4,950,847 + -0.4 4,950,848 - -0.0 4,950,966 + Psyr_4161 0.32 -0.0 4,951,087 + Psyr_4161 0.57 -1.5 4,951,087 + Psyr_4161 0.57 -1.3 4,951,135 + Psyr_4161 0.67 -1.0 4,951,135 + Psyr_4161 0.67 -1.9 4,951,136 - Psyr_4161 0.67 -1.0 4,952,410 - -1.8 4,952,476 - +1.1 4,952,506 - +0.4 4,952,538 - +0.0 4,952,538 - -2.2 4,952,544 - -0.1 4,952,544 - +0.3 4,952,544 - -2.0 4,952,544 - +0.9 4,952,544 - +0.3 4,952,564 - +0.4 4,952,564 - +1.7 4,952,564 - +0.5 4,952,598 - +0.7
Or see this region's nucleotide sequence