Experiment: KB with Acriflavine 1.25 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3623 and Psyr_3624 are separated by 58 nucleotides Psyr_3624 and Psyr_3625 overlap by 11 nucleotides Psyr_3625 and Psyr_3626 are separated by 204 nucleotides Psyr_3626 and Psyr_3627 are separated by 190 nucleotides
Psyr_3623: Psyr_3623 - Protein of unknown function DUF1127, at 4,307,472 to 4,307,705
_3623
Psyr_3624: Psyr_3624 - transcriptional regulator, LysR family, at 4,307,764 to 4,308,654
_3624
Psyr_3625: Psyr_3625 - Protein of unknown function DUF81, at 4,308,644 to 4,309,375
_3625
Psyr_3626: Psyr_3626 - transcriptional regulator, MarR family, at 4,309,580 to 4,310,053
_3626
Psyr_3627: Psyr_3627 - OsmC-like protein, at 4,310,244 to 4,310,663
_3627
Position (kb) 4308
4309
4310 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4307.674 kb on - strand, within Psyr_3623 at 4307.810 kb on - strand at 4308.116 kb on - strand, within Psyr_3624 at 4308.116 kb on - strand, within Psyr_3624 at 4308.116 kb on - strand, within Psyr_3624 at 4308.116 kb on - strand, within Psyr_3624 at 4308.164 kb on - strand, within Psyr_3624 at 4308.628 kb on + strand at 4308.628 kb on + strand at 4308.628 kb on + strand at 4308.628 kb on + strand at 4308.629 kb on - strand at 4308.629 kb on - strand at 4308.629 kb on - strand at 4308.629 kb on - strand at 4308.629 kb on - strand at 4308.816 kb on + strand, within Psyr_3625 at 4308.816 kb on + strand, within Psyr_3625 at 4308.816 kb on + strand, within Psyr_3625 at 4308.816 kb on + strand, within Psyr_3625 at 4308.816 kb on + strand, within Psyr_3625 at 4308.817 kb on - strand, within Psyr_3625 at 4308.817 kb on - strand, within Psyr_3625 at 4308.817 kb on - strand, within Psyr_3625 at 4308.817 kb on - strand, within Psyr_3625 at 4308.817 kb on - strand, within Psyr_3625 at 4308.817 kb on - strand, within Psyr_3625 at 4308.817 kb on - strand, within Psyr_3625 at 4309.032 kb on + strand, within Psyr_3625 at 4309.032 kb on + strand, within Psyr_3625 at 4309.033 kb on - strand, within Psyr_3625 at 4309.033 kb on - strand, within Psyr_3625 at 4309.033 kb on - strand, within Psyr_3625 at 4309.033 kb on - strand, within Psyr_3625 at 4309.175 kb on - strand, within Psyr_3625 at 4309.423 kb on + strand at 4309.529 kb on - strand at 4309.543 kb on + strand at 4309.544 kb on - strand at 4309.579 kb on + strand at 4309.579 kb on + strand at 4309.579 kb on + strand at 4309.581 kb on - strand at 4309.694 kb on + strand, within Psyr_3626 at 4309.694 kb on + strand, within Psyr_3626 at 4309.695 kb on - strand, within Psyr_3626 at 4309.695 kb on - strand, within Psyr_3626 at 4309.728 kb on - strand, within Psyr_3626 at 4309.736 kb on + strand, within Psyr_3626 at 4309.737 kb on - strand, within Psyr_3626 at 4309.737 kb on - strand, within Psyr_3626 at 4310.052 kb on - strand at 4310.173 kb on - strand at 4310.257 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Acriflavine 1.25 ug/ml remove 4,307,674 - Psyr_3623 0.86 +0.1 4,307,810 - +0.2 4,308,116 - Psyr_3624 0.40 -1.3 4,308,116 - Psyr_3624 0.40 -0.5 4,308,116 - Psyr_3624 0.40 -0.0 4,308,116 - Psyr_3624 0.40 -1.3 4,308,164 - Psyr_3624 0.45 -0.6 4,308,628 + -0.5 4,308,628 + -1.8 4,308,628 + -0.1 4,308,628 + -0.3 4,308,629 - -0.0 4,308,629 - -0.0 4,308,629 - -0.6 4,308,629 - -0.3 4,308,629 - -0.6 4,308,816 + Psyr_3625 0.23 -0.6 4,308,816 + Psyr_3625 0.23 -2.1 4,308,816 + Psyr_3625 0.23 +2.0 4,308,816 + Psyr_3625 0.23 -1.0 4,308,816 + Psyr_3625 0.23 -0.5 4,308,817 - Psyr_3625 0.24 -0.4 4,308,817 - Psyr_3625 0.24 +0.3 4,308,817 - Psyr_3625 0.24 +1.1 4,308,817 - Psyr_3625 0.24 -0.9 4,308,817 - Psyr_3625 0.24 +0.9 4,308,817 - Psyr_3625 0.24 -0.0 4,308,817 - Psyr_3625 0.24 -0.2 4,309,032 + Psyr_3625 0.53 -0.4 4,309,032 + Psyr_3625 0.53 -1.6 4,309,033 - Psyr_3625 0.53 +0.6 4,309,033 - Psyr_3625 0.53 +0.2 4,309,033 - Psyr_3625 0.53 -0.0 4,309,033 - Psyr_3625 0.53 +0.1 4,309,175 - Psyr_3625 0.73 -0.9 4,309,423 + -0.8 4,309,529 - +0.1 4,309,543 + +1.0 4,309,544 - +1.1 4,309,579 + -2.6 4,309,579 + +0.4 4,309,579 + -0.1 4,309,581 - -1.3 4,309,694 + Psyr_3626 0.24 -1.7 4,309,694 + Psyr_3626 0.24 -0.0 4,309,695 - Psyr_3626 0.24 -0.1 4,309,695 - Psyr_3626 0.24 +1.1 4,309,728 - Psyr_3626 0.31 -0.6 4,309,736 + Psyr_3626 0.33 -0.4 4,309,737 - Psyr_3626 0.33 -0.0 4,309,737 - Psyr_3626 0.33 -0.5 4,310,052 - +0.8 4,310,173 - -1.3 4,310,257 - -1.4
Or see this region's nucleotide sequence