Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_3311

Experiment: KB with Acriflavine 1.25 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3309 and Psyr_3310 overlap by 4 nucleotidesPsyr_3310 and Psyr_3311 are separated by 15 nucleotidesPsyr_3311 and Psyr_3312 overlap by 67 nucleotides Psyr_3309: Psyr_3309 - membrane protein, putative, at 3,960,406 to 3,961,821 _3309 Psyr_3310: Psyr_3310 - transferase hexapeptide repeat protein, at 3,961,818 to 3,962,639 _3310 Psyr_3311: Psyr_3311 - Virulence factor MVIN-like protein, at 3,962,655 to 3,964,070 _3311 Psyr_3312: Psyr_3312 - transcriptional regulator, LysR family, at 3,964,004 to 3,964,957 _3312 Position (kb) 3962 3963 3964 3965Strain fitness (log2 ratio) -1 0 1 2at 3961.955 kb on + strand, within Psyr_3310at 3961.956 kb on - strand, within Psyr_3310at 3961.956 kb on - strand, within Psyr_3310at 3962.034 kb on + strand, within Psyr_3310at 3962.034 kb on + strand, within Psyr_3310at 3962.035 kb on - strand, within Psyr_3310at 3962.035 kb on - strand, within Psyr_3310at 3962.136 kb on + strand, within Psyr_3310at 3962.136 kb on + strand, within Psyr_3310at 3962.136 kb on + strand, within Psyr_3310at 3962.136 kb on + strand, within Psyr_3310at 3962.136 kb on + strand, within Psyr_3310at 3962.137 kb on - strand, within Psyr_3310at 3962.137 kb on - strand, within Psyr_3310at 3962.137 kb on - strand, within Psyr_3310at 3962.410 kb on + strand, within Psyr_3310at 3962.598 kb on + strandat 3962.598 kb on + strandat 3962.598 kb on + strandat 3962.598 kb on + strandat 3962.599 kb on - strandat 3962.599 kb on - strandat 3962.599 kb on - strandat 3962.599 kb on - strandat 3963.150 kb on + strand, within Psyr_3311at 3963.150 kb on + strand, within Psyr_3311at 3963.151 kb on - strand, within Psyr_3311at 3963.151 kb on - strand, within Psyr_3311at 3963.205 kb on + strand, within Psyr_3311at 3963.232 kb on + strand, within Psyr_3311at 3963.233 kb on - strand, within Psyr_3311at 3963.233 kb on - strand, within Psyr_3311at 3963.249 kb on + strand, within Psyr_3311at 3963.375 kb on - strand, within Psyr_3311at 3964.055 kb on + strandat 3964.060 kb on + strandat 3964.635 kb on - strand, within Psyr_3312at 3964.635 kb on - strand, within Psyr_3312at 3964.641 kb on + strand, within Psyr_3312at 3964.641 kb on + strand, within Psyr_3312at 3964.641 kb on + strand, within Psyr_3312at 3964.641 kb on + strand, within Psyr_3312at 3964.642 kb on - strand, within Psyr_3312at 3964.642 kb on - strand, within Psyr_3312at 3964.642 kb on - strand, within Psyr_3312at 3964.642 kb on - strand, within Psyr_3312at 3964.642 kb on - strand, within Psyr_3312at 3964.642 kb on - strand, within Psyr_3312at 3964.642 kb on - strand, within Psyr_3312at 3964.642 kb on - strand, within Psyr_3312at 3964.642 kb on - strand, within Psyr_3312at 3964.642 kb on - strand, within Psyr_3312at 3964.642 kb on - strand, within Psyr_3312at 3964.898 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Acriflavine 1.25 ug/ml
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3,961,955 + Psyr_3310 0.17 -0.7
3,961,956 - Psyr_3310 0.17 +0.5
3,961,956 - Psyr_3310 0.17 -0.2
3,962,034 + Psyr_3310 0.26 +2.5
3,962,034 + Psyr_3310 0.26 -1.7
3,962,035 - Psyr_3310 0.26 -0.7
3,962,035 - Psyr_3310 0.26 -0.4
3,962,136 + Psyr_3310 0.39 +1.7
3,962,136 + Psyr_3310 0.39 -0.9
3,962,136 + Psyr_3310 0.39 -1.0
3,962,136 + Psyr_3310 0.39 -0.4
3,962,136 + Psyr_3310 0.39 -0.3
3,962,137 - Psyr_3310 0.39 +1.2
3,962,137 - Psyr_3310 0.39 +0.9
3,962,137 - Psyr_3310 0.39 +0.9
3,962,410 + Psyr_3310 0.72 -0.1
3,962,598 + -1.6
3,962,598 + +0.5
3,962,598 + -1.1
3,962,598 + -0.4
3,962,599 - -0.1
3,962,599 - -0.9
3,962,599 - -0.0
3,962,599 - +0.4
3,963,150 + Psyr_3311 0.35 -1.2
3,963,150 + Psyr_3311 0.35 +0.5
3,963,151 - Psyr_3311 0.35 -0.3
3,963,151 - Psyr_3311 0.35 +0.1
3,963,205 + Psyr_3311 0.39 -0.6
3,963,232 + Psyr_3311 0.41 +0.4
3,963,233 - Psyr_3311 0.41 +0.4
3,963,233 - Psyr_3311 0.41 -0.4
3,963,249 + Psyr_3311 0.42 +0.9
3,963,375 - Psyr_3311 0.51 +0.1
3,964,055 + +0.8
3,964,060 + -0.9
3,964,635 - Psyr_3312 0.66 -0.1
3,964,635 - Psyr_3312 0.66 +0.2
3,964,641 + Psyr_3312 0.67 -1.0
3,964,641 + Psyr_3312 0.67 -0.1
3,964,641 + Psyr_3312 0.67 -0.9
3,964,641 + Psyr_3312 0.67 +1.0
3,964,642 - Psyr_3312 0.67 -0.6
3,964,642 - Psyr_3312 0.67 -1.1
3,964,642 - Psyr_3312 0.67 -0.5
3,964,642 - Psyr_3312 0.67 +0.9
3,964,642 - Psyr_3312 0.67 +0.3
3,964,642 - Psyr_3312 0.67 -1.3
3,964,642 - Psyr_3312 0.67 +0.3
3,964,642 - Psyr_3312 0.67 +1.0
3,964,642 - Psyr_3312 0.67 -0.9
3,964,642 - Psyr_3312 0.67 -1.1
3,964,642 - Psyr_3312 0.67 -0.1
3,964,898 - +0.1

Or see this region's nucleotide sequence