Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_2694

Experiment: KB with Acriflavine 1.25 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2693 and Psyr_2694 are separated by 8 nucleotidesPsyr_2694 and Psyr_2695 overlap by 4 nucleotidesPsyr_2695 and Psyr_2696 overlap by 23 nucleotides Psyr_2693: Psyr_2693 - Glycosyl transferase, family 39, at 3,270,050 to 3,271,702 _2693 Psyr_2694: Psyr_2694 - conserved hypothetical protein, at 3,271,711 to 3,272,037 _2694 Psyr_2695: Psyr_2695 - conserved hypothetical protein, at 3,272,034 to 3,272,468 _2695 Psyr_2696: Psyr_2696 - UDP-glucose 6-dehydrogenase, at 3,272,446 to 3,273,840 _2696 Position (kb) 3271 3272 3273Strain fitness (log2 ratio) -2 -1 0 1 2at 3270.749 kb on + strand, within Psyr_2693at 3270.750 kb on - strand, within Psyr_2693at 3270.830 kb on + strand, within Psyr_2693at 3270.830 kb on + strand, within Psyr_2693at 3270.830 kb on + strand, within Psyr_2693at 3270.830 kb on + strand, within Psyr_2693at 3270.830 kb on + strand, within Psyr_2693at 3270.830 kb on + strand, within Psyr_2693at 3270.830 kb on + strand, within Psyr_2693at 3270.830 kb on + strand, within Psyr_2693at 3270.830 kb on + strand, within Psyr_2693at 3270.830 kb on + strand, within Psyr_2693at 3270.830 kb on + strand, within Psyr_2693at 3270.831 kb on - strand, within Psyr_2693at 3270.831 kb on - strand, within Psyr_2693at 3270.831 kb on - strand, within Psyr_2693at 3270.831 kb on - strand, within Psyr_2693at 3270.831 kb on - strand, within Psyr_2693at 3270.831 kb on - strand, within Psyr_2693at 3270.831 kb on - strand, within Psyr_2693at 3270.831 kb on - strand, within Psyr_2693at 3270.831 kb on - strand, within Psyr_2693at 3270.831 kb on - strand, within Psyr_2693at 3270.831 kb on - strand, within Psyr_2693at 3270.831 kb on - strand, within Psyr_2693at 3270.831 kb on - strand, within Psyr_2693at 3270.995 kb on + strand, within Psyr_2693at 3270.995 kb on + strand, within Psyr_2693at 3270.995 kb on + strand, within Psyr_2693at 3270.995 kb on + strand, within Psyr_2693at 3270.995 kb on + strand, within Psyr_2693at 3270.996 kb on - strand, within Psyr_2693at 3270.996 kb on - strand, within Psyr_2693at 3270.996 kb on - strand, within Psyr_2693at 3270.996 kb on - strand, within Psyr_2693at 3270.996 kb on - strand, within Psyr_2693at 3270.996 kb on - strand, within Psyr_2693at 3270.996 kb on - strand, within Psyr_2693at 3270.996 kb on - strand, within Psyr_2693at 3270.996 kb on - strand, within Psyr_2693at 3270.996 kb on - strand, within Psyr_2693at 3270.996 kb on - strand, within Psyr_2693at 3270.996 kb on - strand, within Psyr_2693at 3270.999 kb on + strand, within Psyr_2693at 3271.000 kb on - strand, within Psyr_2693at 3271.139 kb on + strand, within Psyr_2693at 3271.140 kb on - strand, within Psyr_2693at 3271.140 kb on - strand, within Psyr_2693at 3271.487 kb on + strand, within Psyr_2693at 3271.763 kb on - strand, within Psyr_2694at 3271.918 kb on - strand, within Psyr_2694at 3271.918 kb on - strand, within Psyr_2694at 3271.948 kb on + strand, within Psyr_2694at 3271.948 kb on + strand, within Psyr_2694at 3271.948 kb on + strand, within Psyr_2694at 3271.949 kb on - strand, within Psyr_2694at 3271.949 kb on - strand, within Psyr_2694at 3271.949 kb on - strand, within Psyr_2694at 3272.296 kb on - strand, within Psyr_2695at 3272.307 kb on + strand, within Psyr_2695at 3272.308 kb on - strand, within Psyr_2695at 3272.309 kb on + strand, within Psyr_2695at 3272.309 kb on + strand, within Psyr_2695at 3272.473 kb on + strandat 3272.474 kb on - strandat 3272.474 kb on - strandat 3272.486 kb on + strandat 3272.486 kb on + strandat 3272.486 kb on + strandat 3272.487 kb on - strandat 3272.580 kb on + strandat 3272.580 kb on + strandat 3272.581 kb on - strandat 3272.584 kb on + strandat 3272.584 kb on + strandat 3272.584 kb on + strandat 3272.584 kb on + strandat 3272.585 kb on - strandat 3272.585 kb on - strandat 3272.696 kb on + strand, within Psyr_2696at 3273.007 kb on + strand, within Psyr_2696at 3273.007 kb on + strand, within Psyr_2696at 3273.007 kb on + strand, within Psyr_2696at 3273.008 kb on - strand, within Psyr_2696at 3273.008 kb on - strand, within Psyr_2696at 3273.008 kb on - strand, within Psyr_2696

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Acriflavine 1.25 ug/ml
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3,270,749 + Psyr_2693 0.42 +0.9
3,270,750 - Psyr_2693 0.42 -1.8
3,270,830 + Psyr_2693 0.47 +1.8
3,270,830 + Psyr_2693 0.47 -0.2
3,270,830 + Psyr_2693 0.47 +0.5
3,270,830 + Psyr_2693 0.47 +0.3
3,270,830 + Psyr_2693 0.47 +0.9
3,270,830 + Psyr_2693 0.47 -1.2
3,270,830 + Psyr_2693 0.47 +1.1
3,270,830 + Psyr_2693 0.47 -1.2
3,270,830 + Psyr_2693 0.47 +0.7
3,270,830 + Psyr_2693 0.47 +0.4
3,270,830 + Psyr_2693 0.47 +0.4
3,270,831 - Psyr_2693 0.47 -1.4
3,270,831 - Psyr_2693 0.47 -0.1
3,270,831 - Psyr_2693 0.47 -0.4
3,270,831 - Psyr_2693 0.47 -0.6
3,270,831 - Psyr_2693 0.47 +0.0
3,270,831 - Psyr_2693 0.47 +0.1
3,270,831 - Psyr_2693 0.47 +1.2
3,270,831 - Psyr_2693 0.47 +0.4
3,270,831 - Psyr_2693 0.47 -0.1
3,270,831 - Psyr_2693 0.47 -1.4
3,270,831 - Psyr_2693 0.47 -0.3
3,270,831 - Psyr_2693 0.47 -1.9
3,270,831 - Psyr_2693 0.47 +0.3
3,270,995 + Psyr_2693 0.57 -0.8
3,270,995 + Psyr_2693 0.57 +1.4
3,270,995 + Psyr_2693 0.57 -0.7
3,270,995 + Psyr_2693 0.57 -1.1
3,270,995 + Psyr_2693 0.57 +0.9
3,270,996 - Psyr_2693 0.57 -0.9
3,270,996 - Psyr_2693 0.57 +2.3
3,270,996 - Psyr_2693 0.57 -1.0
3,270,996 - Psyr_2693 0.57 +0.7
3,270,996 - Psyr_2693 0.57 -0.3
3,270,996 - Psyr_2693 0.57 -0.6
3,270,996 - Psyr_2693 0.57 +0.6
3,270,996 - Psyr_2693 0.57 +0.4
3,270,996 - Psyr_2693 0.57 -1.1
3,270,996 - Psyr_2693 0.57 +1.4
3,270,996 - Psyr_2693 0.57 -2.1
3,270,996 - Psyr_2693 0.57 -1.1
3,270,999 + Psyr_2693 0.57 -0.8
3,271,000 - Psyr_2693 0.57 -1.6
3,271,139 + Psyr_2693 0.66 +0.3
3,271,140 - Psyr_2693 0.66 -1.2
3,271,140 - Psyr_2693 0.66 +1.4
3,271,487 + Psyr_2693 0.87 -0.6
3,271,763 - Psyr_2694 0.16 -0.7
3,271,918 - Psyr_2694 0.63 -1.9
3,271,918 - Psyr_2694 0.63 -1.4
3,271,948 + Psyr_2694 0.72 +0.9
3,271,948 + Psyr_2694 0.72 -0.3
3,271,948 + Psyr_2694 0.72 +0.0
3,271,949 - Psyr_2694 0.73 +0.7
3,271,949 - Psyr_2694 0.73 -0.8
3,271,949 - Psyr_2694 0.73 +0.3
3,272,296 - Psyr_2695 0.60 -0.3
3,272,307 + Psyr_2695 0.63 +0.2
3,272,308 - Psyr_2695 0.63 -1.1
3,272,309 + Psyr_2695 0.63 +0.7
3,272,309 + Psyr_2695 0.63 -1.1
3,272,473 + -0.8
3,272,474 - +0.8
3,272,474 - +1.9
3,272,486 + -0.5
3,272,486 + -0.1
3,272,486 + +0.0
3,272,487 - -0.7
3,272,580 + -0.3
3,272,580 + +1.9
3,272,581 - -0.1
3,272,584 + +0.1
3,272,584 + +1.5
3,272,584 + +0.9
3,272,584 + +0.1
3,272,585 - +1.3
3,272,585 - -1.2
3,272,696 + Psyr_2696 0.18 +2.5
3,273,007 + Psyr_2696 0.40 -1.4
3,273,007 + Psyr_2696 0.40 +0.9
3,273,007 + Psyr_2696 0.40 +0.1
3,273,008 - Psyr_2696 0.40 -1.4
3,273,008 - Psyr_2696 0.40 +0.9
3,273,008 - Psyr_2696 0.40 +0.4

Or see this region's nucleotide sequence