Experiment: KB with Acriflavine 1.25 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2432 and Psyr_2433 are separated by 168 nucleotides Psyr_2433 and Psyr_2434 are separated by 84 nucleotides
Psyr_2432: Psyr_2432 - diguanylate cyclase/phosphodiesterase, at 2,814,290 to 2,817,199
_2432
Psyr_2433: Psyr_2433 - conserved hypothetical protein, at 2,817,368 to 2,817,922
_2433
Psyr_2434: Psyr_2434 - Carbohydrate kinase, PfkB, at 2,818,007 to 2,818,945
_2434
Position (kb)
2817
2818 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2816.473 kb on + strand, within Psyr_2432 at 2816.642 kb on + strand, within Psyr_2432 at 2816.642 kb on + strand, within Psyr_2432 at 2816.642 kb on + strand, within Psyr_2432 at 2816.642 kb on + strand, within Psyr_2432 at 2816.642 kb on + strand, within Psyr_2432 at 2816.642 kb on + strand, within Psyr_2432 at 2816.642 kb on + strand, within Psyr_2432 at 2816.642 kb on + strand, within Psyr_2432 at 2816.642 kb on + strand, within Psyr_2432 at 2816.642 kb on + strand, within Psyr_2432 at 2816.642 kb on + strand, within Psyr_2432 at 2816.642 kb on + strand, within Psyr_2432 at 2816.643 kb on - strand, within Psyr_2432 at 2816.643 kb on - strand, within Psyr_2432 at 2816.723 kb on + strand, within Psyr_2432 at 2816.723 kb on + strand, within Psyr_2432 at 2816.723 kb on + strand, within Psyr_2432 at 2816.757 kb on + strand, within Psyr_2432 at 2816.757 kb on + strand, within Psyr_2432 at 2816.758 kb on - strand, within Psyr_2432 at 2816.930 kb on + strand at 2816.930 kb on + strand at 2816.930 kb on + strand at 2816.931 kb on - strand at 2816.931 kb on - strand at 2817.137 kb on + strand at 2817.138 kb on - strand at 2817.138 kb on - strand at 2817.138 kb on - strand at 2817.138 kb on - strand at 2817.138 kb on - strand at 2817.138 kb on - strand at 2817.138 kb on - strand at 2817.305 kb on - strand at 2817.607 kb on + strand, within Psyr_2433 at 2817.608 kb on - strand, within Psyr_2433 at 2817.608 kb on - strand, within Psyr_2433 at 2817.788 kb on + strand, within Psyr_2433 at 2817.789 kb on - strand, within Psyr_2433 at 2817.910 kb on + strand at 2817.985 kb on + strand at 2817.985 kb on + strand at 2817.986 kb on - strand at 2818.183 kb on + strand, within Psyr_2434 at 2818.648 kb on - strand, within Psyr_2434 at 2818.770 kb on + strand, within Psyr_2434
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Acriflavine 1.25 ug/ml remove 2,816,473 + Psyr_2432 0.75 +0.3 2,816,642 + Psyr_2432 0.81 +0.3 2,816,642 + Psyr_2432 0.81 -0.2 2,816,642 + Psyr_2432 0.81 +1.1 2,816,642 + Psyr_2432 0.81 -0.8 2,816,642 + Psyr_2432 0.81 -1.8 2,816,642 + Psyr_2432 0.81 +1.1 2,816,642 + Psyr_2432 0.81 +0.5 2,816,642 + Psyr_2432 0.81 -0.3 2,816,642 + Psyr_2432 0.81 +0.1 2,816,642 + Psyr_2432 0.81 -1.1 2,816,642 + Psyr_2432 0.81 +0.5 2,816,642 + Psyr_2432 0.81 +0.6 2,816,643 - Psyr_2432 0.81 -0.1 2,816,643 - Psyr_2432 0.81 -0.5 2,816,723 + Psyr_2432 0.84 -0.1 2,816,723 + Psyr_2432 0.84 -0.3 2,816,723 + Psyr_2432 0.84 -0.5 2,816,757 + Psyr_2432 0.85 -2.1 2,816,757 + Psyr_2432 0.85 -0.4 2,816,758 - Psyr_2432 0.85 +0.1 2,816,930 + -0.2 2,816,930 + -0.5 2,816,930 + -1.2 2,816,931 - +0.4 2,816,931 - +3.2 2,817,137 + +1.9 2,817,138 - +2.1 2,817,138 - +0.2 2,817,138 - +0.6 2,817,138 - +0.2 2,817,138 - +0.1 2,817,138 - +0.5 2,817,138 - +0.9 2,817,305 - +0.2 2,817,607 + Psyr_2433 0.43 -1.1 2,817,608 - Psyr_2433 0.43 +0.2 2,817,608 - Psyr_2433 0.43 -0.7 2,817,788 + Psyr_2433 0.76 -0.1 2,817,789 - Psyr_2433 0.76 -1.8 2,817,910 + +0.9 2,817,985 + +1.8 2,817,985 + -0.3 2,817,986 - +0.1 2,818,183 + Psyr_2434 0.19 -2.1 2,818,648 - Psyr_2434 0.68 +0.7 2,818,770 + Psyr_2434 0.81 -0.1
Or see this region's nucleotide sequence