Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_1617

Experiment: KB with Acriflavine 1.25 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Acriflavine 1.25 ug/ml
1,818,259	-		Psyr_1615	0.46	+0.0
1,818,259	-		Psyr_1615	0.46	-1.0
1,818,362	+		Psyr_1615	0.55	+0.8
1,818,362	+		Psyr_1615	0.55	+0.0
1,818,363	-		Psyr_1615	0.55	+1.4
1,818,363	-		Psyr_1615	0.55	-1.1
1,818,363	-		Psyr_1615	0.55	-0.0
1,818,417	+		Psyr_1615	0.59	-0.7
1,818,417	+		Psyr_1615	0.59	+0.0
1,818,470	-		Psyr_1615	0.64	+0.7
1,818,562	+		Psyr_1615	0.72	+0.7
1,818,794	+				+1.6
1,818,794	+				-0.5
1,818,794	+				+0.0
1,818,794	+				+0.2
1,818,795	-				-0.4
1,818,795	-				+1.0
1,818,941	+				-1.9
1,818,941	+				-0.1
1,818,942	-				+1.3
1,819,112	+		Psyr_1616	0.73	+0.0
1,819,132	+		Psyr_1616	0.81	-0.5
1,819,374	+		Psyr_1617	0.25	-0.4
1,819,374	+		Psyr_1617	0.25	+0.8
1,819,374	+		Psyr_1617	0.25	-0.1
1,819,375	-		Psyr_1617	0.25	-0.5
1,819,375	-		Psyr_1617	0.25	+0.5
1,819,377	+		Psyr_1617	0.25	+0.2
1,819,377	+		Psyr_1617	0.25	-0.3
1,819,377	+		Psyr_1617	0.25	-0.6
1,819,377	+		Psyr_1617	0.25	-2.3
1,819,378	-		Psyr_1617	0.25	+0.2
1,819,378	-		Psyr_1617	0.25	+1.0
1,819,378	-		Psyr_1617	0.25	-0.6
1,819,378	-		Psyr_1617	0.25	+1.7
1,819,419	+		Psyr_1617	0.30	-0.3
1,819,420	-		Psyr_1617	0.30	+0.9
1,819,420	-		Psyr_1617	0.30	+0.3
1,819,455	+		Psyr_1617	0.34	-0.4
1,819,455	+		Psyr_1617	0.34	+1.3
1,819,455	+		Psyr_1617	0.34	+0.0
1,819,455	+		Psyr_1617	0.34	+0.5
1,819,456	-		Psyr_1617	0.34	+1.0
1,819,456	-		Psyr_1617	0.34	+0.3
1,819,516	+		Psyr_1617	0.41	+0.1
1,819,516	+		Psyr_1617	0.41	+0.0
1,819,516	+		Psyr_1617	0.41	+1.2
1,819,516	+		Psyr_1617	0.41	+0.6
1,819,516	+		Psyr_1617	0.41	+0.5
1,819,517	-		Psyr_1617	0.42	+0.1
1,819,517	-		Psyr_1617	0.42	-2.3
1,819,517	-		Psyr_1617	0.42	-0.6
1,819,554	-		Psyr_1617	0.46	-2.2
1,819,558	-		Psyr_1617	0.46	+0.9
1,819,605	+		Psyr_1617	0.52	-2.2
1,819,615	+		Psyr_1617	0.53	-0.3
1,819,710	+		Psyr_1617	0.64	-1.4
1,819,710	+		Psyr_1617	0.64	-0.8
1,819,710	+		Psyr_1617	0.64	-1.0
1,819,711	-		Psyr_1617	0.64	+0.7
1,819,711	-		Psyr_1617	0.64	-0.5
1,819,797	+		Psyr_1617	0.74	+0.2
1,819,797	+		Psyr_1617	0.74	+0.3
1,819,797	+		Psyr_1617	0.74	-0.1
1,819,798	-		Psyr_1617	0.74	+0.4
1,819,798	-		Psyr_1617	0.74	-0.7
1,819,798	-		Psyr_1617	0.74	-0.2
1,819,798	-		Psyr_1617	0.74	-0.1
1,819,798	-		Psyr_1617	0.74	-0.1
1,819,798	-		Psyr_1617	0.74	+0.3
1,819,798	-		Psyr_1617	0.74	-0.1
1,820,116	-		Psyr_1618	0.12	+0.8
1,820,117	+		Psyr_1618	0.13	-2.2
1,820,271	-		Psyr_1618	0.32	-0.8
1,820,299	+		Psyr_1618	0.35	-1.3
1,820,299	+		Psyr_1618	0.35	+0.3
1,820,299	+		Psyr_1618	0.35	+0.4
1,820,300	-		Psyr_1618	0.35	-1.5
1,820,300	-		Psyr_1618	0.35	+0.2
1,820,300	-		Psyr_1618	0.35	-0.7
1,820,357	-		Psyr_1618	0.43	+1.0
1,820,420	+		Psyr_1618	0.51	+0.3
1,820,420	+		Psyr_1618	0.51	-0.2
1,820,420	+		Psyr_1618	0.51	+0.2
1,820,420	+		Psyr_1618	0.51	-0.6
1,820,421	-		Psyr_1618	0.51	+0.7
1,820,421	-		Psyr_1618	0.51	+0.1
1,820,430	+		Psyr_1618	0.52	-0.1
1,820,430	+		Psyr_1618	0.52	-1.0
1,820,431	-		Psyr_1618	0.52	+0.4
1,820,462	+		Psyr_1618	0.56	-1.3
1,820,462	+		Psyr_1618	0.56	+0.3
1,820,511	+		Psyr_1618	0.62	+0.7
1,820,511	+		Psyr_1618	0.62	-3.1
1,820,699	+		Psyr_1618	0.85	-0.6
1,820,700	-		Psyr_1618	0.86	+0.8
1,820,860	-		Psyr_1619	0.11	+0.0
1,820,967	+		Psyr_1619	0.31	+1.3
1,820,967	+		Psyr_1619	0.31	-2.2
1,820,967	+		Psyr_1619	0.31	+0.0
1,820,968	-		Psyr_1619	0.32	-2.2
1,820,968	-		Psyr_1619	0.32	+2.3