Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_1615

Experiment: KB with Acriflavine 1.25 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1614 and Psyr_1615 are separated by 32 nucleotidesPsyr_1615 and Psyr_1616 are separated by 41 nucleotidesPsyr_1616 and Psyr_1617 overlap by 17 nucleotides Psyr_1614: Psyr_1614 - lipid A biosynthesis acyltransferase, at 1,816,749 to 1,817,681 _1614 Psyr_1615: Psyr_1615 - Patatin, at 1,817,714 to 1,818,898 _1615 Psyr_1616: Psyr_1616 - Rieske [2Fe-2S] region, at 1,818,940 to 1,819,176 _1616 Psyr_1617: Psyr_1617 - conserved hypothetical protein, at 1,819,160 to 1,820,017 _1617 Position (kb) 1817 1818 1819Strain fitness (log2 ratio) -3 -2 -1 0 1at 1816.766 kb on + strandat 1816.766 kb on + strandat 1816.890 kb on + strand, within Psyr_1614at 1816.890 kb on + strand, within Psyr_1614at 1816.890 kb on + strand, within Psyr_1614at 1816.891 kb on - strand, within Psyr_1614at 1817.202 kb on + strand, within Psyr_1614at 1817.202 kb on + strand, within Psyr_1614at 1817.203 kb on - strand, within Psyr_1614at 1817.315 kb on - strand, within Psyr_1614at 1817.315 kb on - strand, within Psyr_1614at 1817.358 kb on + strand, within Psyr_1614at 1817.525 kb on + strand, within Psyr_1614at 1817.664 kb on + strandat 1817.664 kb on + strandat 1817.664 kb on + strandat 1817.665 kb on - strandat 1817.665 kb on - strandat 1817.665 kb on - strandat 1817.665 kb on - strandat 1817.675 kb on + strandat 1817.675 kb on + strandat 1817.675 kb on + strandat 1817.675 kb on + strandat 1817.676 kb on - strandat 1817.676 kb on - strandat 1817.679 kb on + strandat 1817.680 kb on - strandat 1817.680 kb on - strandat 1817.680 kb on - strandat 1817.680 kb on - strandat 1817.711 kb on + strandat 1817.711 kb on + strandat 1817.711 kb on + strandat 1817.711 kb on + strandat 1817.712 kb on - strandat 1817.712 kb on - strandat 1817.712 kb on - strandat 1817.712 kb on - strandat 1817.712 kb on - strandat 1817.712 kb on - strandat 1817.808 kb on - strandat 1817.997 kb on + strand, within Psyr_1615at 1818.259 kb on - strand, within Psyr_1615at 1818.259 kb on - strand, within Psyr_1615at 1818.362 kb on + strand, within Psyr_1615at 1818.362 kb on + strand, within Psyr_1615at 1818.363 kb on - strand, within Psyr_1615at 1818.363 kb on - strand, within Psyr_1615at 1818.363 kb on - strand, within Psyr_1615at 1818.417 kb on + strand, within Psyr_1615at 1818.417 kb on + strand, within Psyr_1615at 1818.470 kb on - strand, within Psyr_1615at 1818.562 kb on + strand, within Psyr_1615at 1818.794 kb on + strandat 1818.794 kb on + strandat 1818.794 kb on + strandat 1818.794 kb on + strandat 1818.795 kb on - strandat 1818.795 kb on - strandat 1818.941 kb on + strandat 1818.941 kb on + strandat 1818.942 kb on - strandat 1819.112 kb on + strand, within Psyr_1616at 1819.132 kb on + strand, within Psyr_1616at 1819.374 kb on + strand, within Psyr_1617at 1819.374 kb on + strand, within Psyr_1617at 1819.374 kb on + strand, within Psyr_1617at 1819.375 kb on - strand, within Psyr_1617at 1819.375 kb on - strand, within Psyr_1617at 1819.377 kb on + strand, within Psyr_1617at 1819.377 kb on + strand, within Psyr_1617at 1819.377 kb on + strand, within Psyr_1617at 1819.377 kb on + strand, within Psyr_1617at 1819.378 kb on - strand, within Psyr_1617at 1819.378 kb on - strand, within Psyr_1617at 1819.378 kb on - strand, within Psyr_1617at 1819.378 kb on - strand, within Psyr_1617at 1819.419 kb on + strand, within Psyr_1617at 1819.420 kb on - strand, within Psyr_1617at 1819.420 kb on - strand, within Psyr_1617at 1819.455 kb on + strand, within Psyr_1617at 1819.455 kb on + strand, within Psyr_1617at 1819.455 kb on + strand, within Psyr_1617at 1819.455 kb on + strand, within Psyr_1617at 1819.456 kb on - strand, within Psyr_1617at 1819.456 kb on - strand, within Psyr_1617at 1819.516 kb on + strand, within Psyr_1617at 1819.516 kb on + strand, within Psyr_1617at 1819.516 kb on + strand, within Psyr_1617at 1819.516 kb on + strand, within Psyr_1617at 1819.516 kb on + strand, within Psyr_1617at 1819.517 kb on - strand, within Psyr_1617at 1819.517 kb on - strand, within Psyr_1617at 1819.517 kb on - strand, within Psyr_1617at 1819.554 kb on - strand, within Psyr_1617at 1819.558 kb on - strand, within Psyr_1617at 1819.605 kb on + strand, within Psyr_1617at 1819.615 kb on + strand, within Psyr_1617at 1819.710 kb on + strand, within Psyr_1617at 1819.710 kb on + strand, within Psyr_1617at 1819.710 kb on + strand, within Psyr_1617at 1819.711 kb on - strand, within Psyr_1617at 1819.711 kb on - strand, within Psyr_1617at 1819.797 kb on + strand, within Psyr_1617at 1819.797 kb on + strand, within Psyr_1617at 1819.797 kb on + strand, within Psyr_1617at 1819.798 kb on - strand, within Psyr_1617at 1819.798 kb on - strand, within Psyr_1617at 1819.798 kb on - strand, within Psyr_1617at 1819.798 kb on - strand, within Psyr_1617at 1819.798 kb on - strand, within Psyr_1617at 1819.798 kb on - strand, within Psyr_1617at 1819.798 kb on - strand, within Psyr_1617

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Acriflavine 1.25 ug/ml
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1,816,766 + -2.5
1,816,766 + -1.3
1,816,890 + Psyr_1614 0.15 -1.8
1,816,890 + Psyr_1614 0.15 -2.3
1,816,890 + Psyr_1614 0.15 -3.2
1,816,891 - Psyr_1614 0.15 -2.3
1,817,202 + Psyr_1614 0.49 -1.6
1,817,202 + Psyr_1614 0.49 -3.3
1,817,203 - Psyr_1614 0.49 -1.3
1,817,315 - Psyr_1614 0.61 -0.6
1,817,315 - Psyr_1614 0.61 -2.5
1,817,358 + Psyr_1614 0.65 -2.0
1,817,525 + Psyr_1614 0.83 -2.5
1,817,664 + +0.0
1,817,664 + -1.0
1,817,664 + -1.4
1,817,665 - -2.6
1,817,665 - -2.7
1,817,665 - -2.7
1,817,665 - -3.6
1,817,675 + -1.2
1,817,675 + -2.2
1,817,675 + -0.1
1,817,675 + -1.3
1,817,676 - -1.9
1,817,676 - -0.7
1,817,679 + -0.1
1,817,680 - -1.3
1,817,680 - -1.0
1,817,680 - +1.4
1,817,680 - -0.4
1,817,711 + +0.8
1,817,711 + -0.1
1,817,711 + -1.9
1,817,711 + -1.1
1,817,712 - -0.4
1,817,712 - -0.4
1,817,712 - +1.0
1,817,712 - +1.4
1,817,712 - -0.1
1,817,712 - -1.3
1,817,808 - +0.9
1,817,997 + Psyr_1615 0.24 +1.2
1,818,259 - Psyr_1615 0.46 +0.0
1,818,259 - Psyr_1615 0.46 -1.0
1,818,362 + Psyr_1615 0.55 +0.8
1,818,362 + Psyr_1615 0.55 +0.0
1,818,363 - Psyr_1615 0.55 +1.4
1,818,363 - Psyr_1615 0.55 -1.1
1,818,363 - Psyr_1615 0.55 -0.0
1,818,417 + Psyr_1615 0.59 -0.7
1,818,417 + Psyr_1615 0.59 +0.0
1,818,470 - Psyr_1615 0.64 +0.7
1,818,562 + Psyr_1615 0.72 +0.7
1,818,794 + +1.6
1,818,794 + -0.5
1,818,794 + +0.0
1,818,794 + +0.2
1,818,795 - -0.4
1,818,795 - +1.0
1,818,941 + -1.9
1,818,941 + -0.1
1,818,942 - +1.3
1,819,112 + Psyr_1616 0.73 +0.0
1,819,132 + Psyr_1616 0.81 -0.5
1,819,374 + Psyr_1617 0.25 -0.4
1,819,374 + Psyr_1617 0.25 +0.8
1,819,374 + Psyr_1617 0.25 -0.1
1,819,375 - Psyr_1617 0.25 -0.5
1,819,375 - Psyr_1617 0.25 +0.5
1,819,377 + Psyr_1617 0.25 +0.2
1,819,377 + Psyr_1617 0.25 -0.3
1,819,377 + Psyr_1617 0.25 -0.6
1,819,377 + Psyr_1617 0.25 -2.3
1,819,378 - Psyr_1617 0.25 +0.2
1,819,378 - Psyr_1617 0.25 +1.0
1,819,378 - Psyr_1617 0.25 -0.6
1,819,378 - Psyr_1617 0.25 +1.7
1,819,419 + Psyr_1617 0.30 -0.3
1,819,420 - Psyr_1617 0.30 +0.9
1,819,420 - Psyr_1617 0.30 +0.3
1,819,455 + Psyr_1617 0.34 -0.4
1,819,455 + Psyr_1617 0.34 +1.3
1,819,455 + Psyr_1617 0.34 +0.0
1,819,455 + Psyr_1617 0.34 +0.5
1,819,456 - Psyr_1617 0.34 +1.0
1,819,456 - Psyr_1617 0.34 +0.3
1,819,516 + Psyr_1617 0.41 +0.1
1,819,516 + Psyr_1617 0.41 +0.0
1,819,516 + Psyr_1617 0.41 +1.2
1,819,516 + Psyr_1617 0.41 +0.6
1,819,516 + Psyr_1617 0.41 +0.5
1,819,517 - Psyr_1617 0.42 +0.1
1,819,517 - Psyr_1617 0.42 -2.3
1,819,517 - Psyr_1617 0.42 -0.6
1,819,554 - Psyr_1617 0.46 -2.2
1,819,558 - Psyr_1617 0.46 +0.9
1,819,605 + Psyr_1617 0.52 -2.2
1,819,615 + Psyr_1617 0.53 -0.3
1,819,710 + Psyr_1617 0.64 -1.4
1,819,710 + Psyr_1617 0.64 -0.8
1,819,710 + Psyr_1617 0.64 -1.0
1,819,711 - Psyr_1617 0.64 +0.7
1,819,711 - Psyr_1617 0.64 -0.5
1,819,797 + Psyr_1617 0.74 +0.2
1,819,797 + Psyr_1617 0.74 +0.3
1,819,797 + Psyr_1617 0.74 -0.1
1,819,798 - Psyr_1617 0.74 +0.4
1,819,798 - Psyr_1617 0.74 -0.7
1,819,798 - Psyr_1617 0.74 -0.2
1,819,798 - Psyr_1617 0.74 -0.1
1,819,798 - Psyr_1617 0.74 -0.1
1,819,798 - Psyr_1617 0.74 +0.3
1,819,798 - Psyr_1617 0.74 -0.1

Or see this region's nucleotide sequence