Experiment: KB with Acriflavine 1.25 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0839 and Psyr_0840 are separated by 366 nucleotides Psyr_0840 and Psyr_0841 are separated by 100 nucleotides Psyr_0841 and Psyr_0842 overlap by 2 nucleotides
Psyr_0839: Psyr_0839 - Deoxyribose-phosphate aldolase, at 950,669 to 951,454
_0839
Psyr_0840: Psyr_0840 - Pentapeptide repeat protein, at 951,821 to 952,165
_0840
Psyr_0841: Psyr_0841 - conserved hypothetical protein, at 952,266 to 953,936
_0841
Psyr_0842: Psyr_0842 - Peptidoglycan glycosyltransferase, at 953,935 to 956,256
_0842
Position (kb) 952
953
954 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 951.314 kb on + strand, within Psyr_0839 at 951.314 kb on + strand, within Psyr_0839 at 951.314 kb on + strand, within Psyr_0839 at 951.314 kb on + strand, within Psyr_0839 at 951.314 kb on + strand, within Psyr_0839 at 951.315 kb on - strand, within Psyr_0839 at 951.315 kb on - strand, within Psyr_0839 at 951.315 kb on - strand, within Psyr_0839 at 951.535 kb on + strand at 951.678 kb on - strand at 951.688 kb on + strand at 951.689 kb on - strand at 951.689 kb on - strand at 951.702 kb on + strand at 951.702 kb on + strand at 951.702 kb on + strand at 951.709 kb on + strand at 951.710 kb on - strand at 951.767 kb on + strand at 951.767 kb on + strand at 951.767 kb on + strand at 951.767 kb on + strand at 951.767 kb on + strand at 951.767 kb on + strand at 951.768 kb on - strand at 951.815 kb on - strand at 951.949 kb on + strand, within Psyr_0840 at 951.991 kb on - strand, within Psyr_0840 at 952.129 kb on + strand, within Psyr_0840 at 952.129 kb on + strand, within Psyr_0840 at 952.129 kb on + strand, within Psyr_0840 at 952.129 kb on + strand, within Psyr_0840 at 952.130 kb on - strand, within Psyr_0840 at 952.130 kb on - strand, within Psyr_0840 at 952.130 kb on - strand, within Psyr_0840 at 952.130 kb on - strand, within Psyr_0840 at 952.130 kb on - strand, within Psyr_0840 at 952.130 kb on - strand, within Psyr_0840 at 952.130 kb on - strand, within Psyr_0840 at 952.130 kb on - strand, within Psyr_0840 at 952.130 kb on - strand, within Psyr_0840 at 952.130 kb on - strand, within Psyr_0840 at 952.130 kb on - strand, within Psyr_0840 at 952.130 kb on - strand, within Psyr_0840 at 952.130 kb on - strand, within Psyr_0840 at 952.130 kb on - strand, within Psyr_0840 at 952.130 kb on - strand, within Psyr_0840 at 952.130 kb on - strand, within Psyr_0840 at 952.131 kb on + strand at 952.131 kb on + strand at 952.131 kb on + strand at 952.131 kb on + strand at 952.131 kb on + strand at 952.131 kb on + strand at 952.131 kb on + strand at 952.131 kb on + strand at 952.131 kb on + strand at 952.131 kb on + strand at 952.131 kb on + strand at 952.132 kb on - strand at 952.132 kb on - strand at 952.132 kb on - strand at 952.132 kb on - strand at 952.132 kb on - strand at 952.132 kb on - strand at 952.267 kb on + strand at 952.561 kb on + strand, within Psyr_0841 at 952.561 kb on + strand, within Psyr_0841 at 952.562 kb on - strand, within Psyr_0841 at 952.562 kb on - strand, within Psyr_0841 at 952.562 kb on - strand, within Psyr_0841 at 952.575 kb on + strand, within Psyr_0841 at 952.630 kb on + strand, within Psyr_0841 at 952.630 kb on + strand, within Psyr_0841 at 952.630 kb on + strand, within Psyr_0841 at 952.630 kb on + strand, within Psyr_0841 at 952.630 kb on + strand, within Psyr_0841 at 952.630 kb on + strand, within Psyr_0841 at 952.630 kb on + strand, within Psyr_0841 at 952.631 kb on - strand, within Psyr_0841 at 952.631 kb on - strand, within Psyr_0841 at 952.631 kb on - strand, within Psyr_0841 at 952.631 kb on - strand, within Psyr_0841 at 952.631 kb on - strand, within Psyr_0841 at 952.631 kb on - strand, within Psyr_0841 at 952.631 kb on - strand, within Psyr_0841 at 952.631 kb on - strand, within Psyr_0841 at 952.631 kb on - strand, within Psyr_0841 at 952.657 kb on + strand, within Psyr_0841 at 952.658 kb on - strand, within Psyr_0841 at 952.699 kb on - strand, within Psyr_0841 at 952.699 kb on - strand, within Psyr_0841 at 952.699 kb on - strand, within Psyr_0841 at 952.817 kb on - strand, within Psyr_0841 at 952.817 kb on - strand, within Psyr_0841 at 952.817 kb on - strand, within Psyr_0841 at 952.837 kb on + strand, within Psyr_0841 at 952.837 kb on + strand, within Psyr_0841 at 952.837 kb on + strand, within Psyr_0841 at 952.838 kb on - strand, within Psyr_0841 at 952.838 kb on - strand, within Psyr_0841 at 952.940 kb on + strand, within Psyr_0841 at 952.943 kb on - strand, within Psyr_0841 at 952.991 kb on - strand, within Psyr_0841 at 953.068 kb on + strand, within Psyr_0841 at 953.068 kb on + strand, within Psyr_0841 at 953.317 kb on - strand, within Psyr_0841 at 953.501 kb on - strand, within Psyr_0841 at 953.572 kb on + strand, within Psyr_0841 at 953.572 kb on + strand, within Psyr_0841 at 953.572 kb on + strand, within Psyr_0841 at 953.572 kb on + strand, within Psyr_0841 at 953.572 kb on + strand, within Psyr_0841 at 953.572 kb on + strand, within Psyr_0841 at 953.573 kb on - strand, within Psyr_0841 at 953.686 kb on + strand, within Psyr_0841 at 953.686 kb on + strand, within Psyr_0841 at 953.687 kb on - strand, within Psyr_0841 at 953.693 kb on - strand, within Psyr_0841 at 953.835 kb on + strand at 953.835 kb on + strand at 953.835 kb on + strand at 953.836 kb on - strand at 953.839 kb on + strand at 953.839 kb on + strand at 953.840 kb on - strand at 953.921 kb on + strand at 953.921 kb on + strand at 953.922 kb on - strand at 953.922 kb on - strand at 953.922 kb on - strand at 953.922 kb on - strand at 953.924 kb on - strand at 953.924 kb on - strand at 953.924 kb on - strand at 953.924 kb on - strand at 953.989 kb on - strand at 954.059 kb on - strand at 954.059 kb on - strand at 954.059 kb on - strand at 954.059 kb on - strand at 954.059 kb on - strand at 954.121 kb on + strand at 954.121 kb on + strand at 954.122 kb on - strand at 954.122 kb on - strand at 954.122 kb on - strand at 954.122 kb on - strand at 954.267 kb on + strand, within Psyr_0842 at 954.287 kb on - strand, within Psyr_0842 at 954.287 kb on - strand, within Psyr_0842 at 954.337 kb on + strand, within Psyr_0842 at 954.337 kb on + strand, within Psyr_0842 at 954.337 kb on + strand, within Psyr_0842 at 954.337 kb on + strand, within Psyr_0842 at 954.337 kb on + strand, within Psyr_0842 at 954.337 kb on + strand, within Psyr_0842 at 954.337 kb on + strand, within Psyr_0842 at 954.337 kb on + strand, within Psyr_0842 at 954.337 kb on + strand, within Psyr_0842 at 954.337 kb on + strand, within Psyr_0842 at 954.338 kb on - strand, within Psyr_0842 at 954.338 kb on - strand, within Psyr_0842 at 954.338 kb on - strand, within Psyr_0842 at 954.338 kb on - strand, within Psyr_0842 at 954.338 kb on - strand, within Psyr_0842 at 954.342 kb on - strand, within Psyr_0842 at 954.342 kb on - strand, within Psyr_0842 at 954.564 kb on + strand, within Psyr_0842 at 954.565 kb on - strand, within Psyr_0842 at 954.565 kb on - strand, within Psyr_0842 at 954.597 kb on + strand, within Psyr_0842 at 954.597 kb on + strand, within Psyr_0842 at 954.597 kb on + strand, within Psyr_0842 at 954.598 kb on - strand, within Psyr_0842 at 954.628 kb on + strand, within Psyr_0842 at 954.629 kb on - strand, within Psyr_0842 at 954.728 kb on - strand, within Psyr_0842 at 954.728 kb on - strand, within Psyr_0842 at 954.796 kb on + strand, within Psyr_0842 at 954.796 kb on + strand, within Psyr_0842 at 954.797 kb on - strand, within Psyr_0842 at 954.877 kb on + strand, within Psyr_0842 at 954.877 kb on + strand, within Psyr_0842 at 954.877 kb on + strand, within Psyr_0842 at 954.877 kb on + strand, within Psyr_0842 at 954.878 kb on - strand, within Psyr_0842 at 954.918 kb on + strand, within Psyr_0842
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Acriflavine 1.25 ug/ml remove 951,314 + Psyr_0839 0.82 +0.3 951,314 + Psyr_0839 0.82 -0.1 951,314 + Psyr_0839 0.82 +0.1 951,314 + Psyr_0839 0.82 +0.0 951,314 + Psyr_0839 0.82 -0.3 951,315 - Psyr_0839 0.82 -0.3 951,315 - Psyr_0839 0.82 +0.5 951,315 - Psyr_0839 0.82 -1.1 951,535 + +0.5 951,678 - +0.1 951,688 + -0.2 951,689 - +0.2 951,689 - +0.9 951,702 + +0.3 951,702 + +1.0 951,702 + -0.1 951,709 + -1.1 951,710 - -0.1 951,767 + +1.0 951,767 + +0.1 951,767 + -0.2 951,767 + +0.0 951,767 + -0.5 951,767 + +0.5 951,768 - -0.8 951,815 - +0.8 951,949 + Psyr_0840 0.37 +0.0 951,991 - Psyr_0840 0.49 +0.2 952,129 + Psyr_0840 0.89 +1.4 952,129 + Psyr_0840 0.89 -0.3 952,129 + Psyr_0840 0.89 -1.0 952,129 + Psyr_0840 0.89 +0.5 952,130 - Psyr_0840 0.90 -0.4 952,130 - Psyr_0840 0.90 -0.2 952,130 - Psyr_0840 0.90 -0.0 952,130 - Psyr_0840 0.90 -0.4 952,130 - Psyr_0840 0.90 -3.1 952,130 - Psyr_0840 0.90 +0.1 952,130 - Psyr_0840 0.90 -1.9 952,130 - Psyr_0840 0.90 -0.4 952,130 - Psyr_0840 0.90 -0.3 952,130 - Psyr_0840 0.90 -0.5 952,130 - Psyr_0840 0.90 +0.3 952,130 - Psyr_0840 0.90 -0.0 952,130 - Psyr_0840 0.90 +0.1 952,130 - Psyr_0840 0.90 +0.5 952,130 - Psyr_0840 0.90 +0.5 952,130 - Psyr_0840 0.90 +1.9 952,131 + -0.4 952,131 + -0.4 952,131 + +0.3 952,131 + +0.9 952,131 + -3.1 952,131 + +0.6 952,131 + +1.0 952,131 + -0.3 952,131 + -0.7 952,131 + -0.4 952,131 + +0.2 952,132 - +0.3 952,132 - -0.1 952,132 - -0.8 952,132 - -0.1 952,132 - +0.6 952,132 - +0.5 952,267 + -1.1 952,561 + Psyr_0841 0.18 -1.5 952,561 + Psyr_0841 0.18 +0.1 952,562 - Psyr_0841 0.18 +0.1 952,562 - Psyr_0841 0.18 -1.7 952,562 - Psyr_0841 0.18 -0.9 952,575 + Psyr_0841 0.18 -0.6 952,630 + Psyr_0841 0.22 -0.2 952,630 + Psyr_0841 0.22 +0.6 952,630 + Psyr_0841 0.22 -0.2 952,630 + Psyr_0841 0.22 +0.9 952,630 + Psyr_0841 0.22 -3.0 952,630 + Psyr_0841 0.22 -1.7 952,630 + Psyr_0841 0.22 -1.7 952,631 - Psyr_0841 0.22 -0.0 952,631 - Psyr_0841 0.22 +0.1 952,631 - Psyr_0841 0.22 +0.4 952,631 - Psyr_0841 0.22 +1.3 952,631 - Psyr_0841 0.22 +0.2 952,631 - Psyr_0841 0.22 -0.9 952,631 - Psyr_0841 0.22 -0.2 952,631 - Psyr_0841 0.22 +0.1 952,631 - Psyr_0841 0.22 +0.3 952,657 + Psyr_0841 0.23 +1.5 952,658 - Psyr_0841 0.23 -1.3 952,699 - Psyr_0841 0.26 +0.1 952,699 - Psyr_0841 0.26 +0.6 952,699 - Psyr_0841 0.26 +1.0 952,817 - Psyr_0841 0.33 -1.1 952,817 - Psyr_0841 0.33 +0.4 952,817 - Psyr_0841 0.33 -0.3 952,837 + Psyr_0841 0.34 -0.3 952,837 + Psyr_0841 0.34 +1.2 952,837 + Psyr_0841 0.34 -0.7 952,838 - Psyr_0841 0.34 -0.3 952,838 - Psyr_0841 0.34 -0.7 952,940 + Psyr_0841 0.40 +0.3 952,943 - Psyr_0841 0.41 -0.2 952,991 - Psyr_0841 0.43 -1.9 953,068 + Psyr_0841 0.48 +1.5 953,068 + Psyr_0841 0.48 +0.7 953,317 - Psyr_0841 0.63 +0.9 953,501 - Psyr_0841 0.74 -0.2 953,572 + Psyr_0841 0.78 -0.2 953,572 + Psyr_0841 0.78 +0.9 953,572 + Psyr_0841 0.78 -0.7 953,572 + Psyr_0841 0.78 -0.4 953,572 + Psyr_0841 0.78 -0.9 953,572 + Psyr_0841 0.78 +0.0 953,573 - Psyr_0841 0.78 -1.4 953,686 + Psyr_0841 0.85 +0.4 953,686 + Psyr_0841 0.85 -0.0 953,687 - Psyr_0841 0.85 -1.0 953,693 - Psyr_0841 0.85 -0.3 953,835 + -0.7 953,835 + -1.2 953,835 + -0.4 953,836 - +2.0 953,839 + -0.9 953,839 + +0.5 953,840 - -0.6 953,921 + -0.4 953,921 + +0.5 953,922 - +1.2 953,922 - +0.1 953,922 - +0.2 953,922 - +0.4 953,924 - -0.1 953,924 - -0.2 953,924 - -1.1 953,924 - +0.4 953,989 - +0.2 954,059 - -1.0 954,059 - +0.0 954,059 - +0.3 954,059 - -1.1 954,059 - -0.5 954,121 + +0.3 954,121 + +0.0 954,122 - +1.3 954,122 - -0.5 954,122 - -0.1 954,122 - +1.1 954,267 + Psyr_0842 0.14 +0.0 954,287 - Psyr_0842 0.15 +1.5 954,287 - Psyr_0842 0.15 -2.7 954,337 + Psyr_0842 0.17 +0.2 954,337 + Psyr_0842 0.17 -1.0 954,337 + Psyr_0842 0.17 +0.7 954,337 + Psyr_0842 0.17 +1.7 954,337 + Psyr_0842 0.17 -1.1 954,337 + Psyr_0842 0.17 -0.1 954,337 + Psyr_0842 0.17 -0.3 954,337 + Psyr_0842 0.17 -1.1 954,337 + Psyr_0842 0.17 +0.2 954,337 + Psyr_0842 0.17 +0.3 954,338 - Psyr_0842 0.17 -0.2 954,338 - Psyr_0842 0.17 -1.4 954,338 - Psyr_0842 0.17 +0.7 954,338 - Psyr_0842 0.17 -1.0 954,338 - Psyr_0842 0.17 +0.6 954,342 - Psyr_0842 0.18 +0.4 954,342 - Psyr_0842 0.18 +1.3 954,564 + Psyr_0842 0.27 -0.2 954,565 - Psyr_0842 0.27 -0.4 954,565 - Psyr_0842 0.27 -1.1 954,597 + Psyr_0842 0.29 -0.7 954,597 + Psyr_0842 0.29 +2.1 954,597 + Psyr_0842 0.29 -0.3 954,598 - Psyr_0842 0.29 -0.6 954,628 + Psyr_0842 0.30 +0.9 954,629 - Psyr_0842 0.30 -0.1 954,728 - Psyr_0842 0.34 +0.0 954,728 - Psyr_0842 0.34 -0.7 954,796 + Psyr_0842 0.37 -1.1 954,796 + Psyr_0842 0.37 +1.3 954,797 - Psyr_0842 0.37 -0.3 954,877 + Psyr_0842 0.41 -0.9 954,877 + Psyr_0842 0.41 +1.2 954,877 + Psyr_0842 0.41 +0.2 954,877 + Psyr_0842 0.41 +0.7 954,878 - Psyr_0842 0.41 -0.9 954,918 + Psyr_0842 0.42 +0.6
Or see this region's nucleotide sequence