Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_74

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_72 and PfGW456L13_73 are separated by 155 nucleotidesPfGW456L13_73 and PfGW456L13_74 are separated by 47 nucleotidesPfGW456L13_74 and PfGW456L13_75 are separated by 20 nucleotidesPfGW456L13_75 and PfGW456L13_76 are separated by 192 nucleotides PfGW456L13_72 - hypothetical protein, at 83,608 to 83,931 _72 PfGW456L13_73 - FIG00955840: hypothetical protein, at 84,087 to 84,440 _73 PfGW456L13_74 - Copper metallochaperone, bacterial analog of Cox17 protein, at 84,488 to 84,967 _74 PfGW456L13_75 - Putative multicopper oxidases, at 84,988 to 85,440 _75 PfGW456L13_76 - Outer membrane receptor proteins, mostly Fe transport, at 85,633 to 87,750 _76 Position (kb) 84 85Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 83.551 kb on + strandat 83.552 kb on - strandat 83.602 kb on - strandat 83.698 kb on - strand, within PfGW456L13_72at 83.868 kb on - strand, within PfGW456L13_72at 83.897 kb on + strand, within PfGW456L13_72at 83.897 kb on + strand, within PfGW456L13_72at 83.897 kb on + strand, within PfGW456L13_72at 83.897 kb on + strand, within PfGW456L13_72at 83.903 kb on + strandat 83.903 kb on + strandat 83.903 kb on + strandat 83.903 kb on + strandat 83.903 kb on + strandat 83.903 kb on + strandat 83.903 kb on + strandat 83.903 kb on + strandat 83.904 kb on - strandat 83.904 kb on - strandat 83.904 kb on - strandat 83.904 kb on - strandat 83.904 kb on - strandat 83.909 kb on + strandat 83.909 kb on + strandat 83.909 kb on + strandat 83.909 kb on + strandat 83.909 kb on + strandat 83.909 kb on + strandat 83.909 kb on + strandat 83.909 kb on + strandat 83.910 kb on - strandat 83.910 kb on - strandat 83.910 kb on - strandat 83.910 kb on - strandat 83.910 kb on - strandat 83.910 kb on - strandat 83.910 kb on - strandat 83.910 kb on - strandat 83.910 kb on - strandat 83.910 kb on - strandat 83.910 kb on - strandat 83.910 kb on - strandat 83.976 kb on + strandat 83.976 kb on + strandat 83.980 kb on + strandat 83.981 kb on - strandat 83.998 kb on + strandat 83.998 kb on + strandat 83.999 kb on - strandat 83.999 kb on - strandat 84.317 kb on + strand, within PfGW456L13_73at 84.317 kb on + strand, within PfGW456L13_73at 84.330 kb on + strand, within PfGW456L13_73at 84.965 kb on + strandat 85.350 kb on + strand, within PfGW456L13_75at 85.350 kb on + strand, within PfGW456L13_75at 85.350 kb on + strand, within PfGW456L13_75at 85.350 kb on + strand, within PfGW456L13_75at 85.519 kb on + strandat 85.519 kb on + strandat 85.519 kb on + strandat 85.519 kb on + strandat 85.520 kb on - strandat 85.520 kb on - strandat 85.609 kb on + strandat 85.681 kb on + strandat 85.681 kb on + strandat 85.681 kb on + strandat 85.681 kb on + strandat 85.681 kb on + strandat 85.682 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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83,551 + -2.3
83,552 - -2.9
83,602 - -3.0
83,698 - PfGW456L13_72 0.28 -2.0
83,868 - PfGW456L13_72 0.80 +2.2
83,897 + PfGW456L13_72 0.89 -1.7
83,897 + PfGW456L13_72 0.89 +0.5
83,897 + PfGW456L13_72 0.89 +1.3
83,897 + PfGW456L13_72 0.89 +0.5
83,903 + -2.8
83,903 + +1.0
83,903 + +0.9
83,903 + +0.8
83,903 + +0.2
83,903 + -0.0
83,903 + -1.1
83,903 + +1.4
83,904 - +0.8
83,904 - +0.7
83,904 - +0.6
83,904 - -1.6
83,904 - -1.8
83,909 + -2.1
83,909 + -2.5
83,909 + -0.8
83,909 + -1.9
83,909 + -0.6
83,909 + +1.4
83,909 + +0.6
83,909 + -1.7
83,910 - -0.4
83,910 - -2.6
83,910 - -2.0
83,910 - +0.6
83,910 - +1.9
83,910 - -1.4
83,910 - -0.1
83,910 - +2.4
83,910 - -1.4
83,910 - -0.5
83,910 - -0.3
83,910 - -0.1
83,976 + -2.0
83,976 + -1.6
83,980 + +2.0
83,981 - +0.6
83,998 + +1.2
83,998 + +1.7
83,999 - +1.9
83,999 - -1.6
84,317 + PfGW456L13_73 0.65 -0.4
84,317 + PfGW456L13_73 0.65 -3.1
84,330 + PfGW456L13_73 0.69 -0.4
84,965 + +1.2
85,350 + PfGW456L13_75 0.80 +0.6
85,350 + PfGW456L13_75 0.80 +2.4
85,350 + PfGW456L13_75 0.80 +1.1
85,350 + PfGW456L13_75 0.80 -0.1
85,519 + -2.5
85,519 + -0.9
85,519 + -1.9
85,519 + +1.9
85,520 - -0.4
85,520 - +3.2
85,609 + +0.1
85,681 + +0.0
85,681 + -0.5
85,681 + -0.2
85,681 + +2.0
85,681 + -3.1
85,682 - +0.7

Or see this region's nucleotide sequence