Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_4641 and PfGW456L13_4642 are separated by 353 nucleotides PfGW456L13_4642 and PfGW456L13_4643 are separated by 149 nucleotides PfGW456L13_4643 and PfGW456L13_4644 are separated by 214 nucleotides PfGW456L13_4644 and PfGW456L13_4645 are separated by 44 nucleotides
PfGW456L13_4641 - Deoxycytidine triphosphate deaminase (EC 3.5.4.13), at 5,178,710 to 5,179,276
_4641
PfGW456L13_4642 - Cold shock protein CspA, at 5,179,630 to 5,179,839
_4642
PfGW456L13_4643 - Peptide chain release factor RF-3, at 5,179,989 to 5,180,945
_4643
PfGW456L13_4644 - methylated-DNA--protein-cysteine methyltransferase-related protein, at 5,181,160 to 5,181,513
_4644
PfGW456L13_4645 - AmpG permease, at 5,181,558 to 5,183,117
_4645
Position (kb) 5179
5180
5181 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 5179.144 kb on - strand, within PfGW456L13_4641 at 5179.293 kb on - strand at 5179.383 kb on + strand at 5179.383 kb on + strand at 5179.383 kb on + strand at 5179.384 kb on - strand at 5179.384 kb on - strand at 5179.421 kb on + strand at 5179.473 kb on - strand at 5179.513 kb on + strand at 5179.513 kb on + strand at 5179.513 kb on + strand at 5179.521 kb on - strand at 5179.521 kb on - strand at 5179.521 kb on - strand at 5179.521 kb on - strand at 5179.545 kb on + strand at 5179.545 kb on + strand at 5179.607 kb on - strand at 5179.607 kb on - strand at 5179.612 kb on - strand at 5179.625 kb on - strand at 5179.625 kb on - strand at 5179.656 kb on + strand, within PfGW456L13_4642 at 5179.656 kb on + strand, within PfGW456L13_4642 at 5179.826 kb on + strand at 5179.833 kb on + strand at 5179.837 kb on + strand at 5179.837 kb on + strand at 5179.837 kb on + strand at 5179.844 kb on + strand at 5179.853 kb on + strand at 5179.857 kb on - strand at 5179.991 kb on - strand at 5179.991 kb on - strand at 5179.991 kb on - strand at 5180.017 kb on + strand at 5180.107 kb on + strand at 5180.107 kb on + strand at 5180.108 kb on - strand, within PfGW456L13_4643 at 5180.108 kb on - strand, within PfGW456L13_4643 at 5180.210 kb on - strand, within PfGW456L13_4643 at 5180.218 kb on + strand, within PfGW456L13_4643 at 5180.218 kb on + strand, within PfGW456L13_4643 at 5180.218 kb on + strand, within PfGW456L13_4643 at 5180.218 kb on + strand, within PfGW456L13_4643 at 5180.219 kb on - strand, within PfGW456L13_4643 at 5180.219 kb on - strand, within PfGW456L13_4643 at 5180.219 kb on - strand, within PfGW456L13_4643 at 5180.275 kb on + strand, within PfGW456L13_4643 at 5180.275 kb on + strand, within PfGW456L13_4643 at 5180.275 kb on + strand, within PfGW456L13_4643 at 5180.275 kb on + strand, within PfGW456L13_4643 at 5180.399 kb on - strand, within PfGW456L13_4643 at 5180.453 kb on - strand, within PfGW456L13_4643 at 5180.453 kb on - strand, within PfGW456L13_4643 at 5180.506 kb on + strand, within PfGW456L13_4643 at 5180.506 kb on + strand, within PfGW456L13_4643 at 5180.506 kb on + strand, within PfGW456L13_4643 at 5180.506 kb on + strand, within PfGW456L13_4643 at 5180.507 kb on - strand, within PfGW456L13_4643 at 5180.507 kb on - strand, within PfGW456L13_4643 at 5180.507 kb on - strand, within PfGW456L13_4643 at 5180.507 kb on - strand, within PfGW456L13_4643 at 5180.569 kb on + strand, within PfGW456L13_4643 at 5180.570 kb on - strand, within PfGW456L13_4643 at 5180.570 kb on - strand, within PfGW456L13_4643 at 5180.570 kb on - strand, within PfGW456L13_4643 at 5180.600 kb on - strand, within PfGW456L13_4643 at 5180.770 kb on + strand, within PfGW456L13_4643 at 5180.770 kb on + strand, within PfGW456L13_4643 at 5180.770 kb on + strand, within PfGW456L13_4643 at 5180.770 kb on + strand, within PfGW456L13_4643 at 5180.770 kb on + strand, within PfGW456L13_4643 at 5180.771 kb on - strand, within PfGW456L13_4643 at 5180.771 kb on - strand, within PfGW456L13_4643 at 5180.771 kb on - strand, within PfGW456L13_4643 at 5180.771 kb on - strand, within PfGW456L13_4643 at 5180.771 kb on - strand, within PfGW456L13_4643 at 5180.771 kb on - strand, within PfGW456L13_4643 at 5180.771 kb on - strand, within PfGW456L13_4643 at 5180.771 kb on - strand, within PfGW456L13_4643 at 5180.771 kb on - strand, within PfGW456L13_4643 at 5180.771 kb on - strand, within PfGW456L13_4643 at 5180.771 kb on - strand, within PfGW456L13_4643 at 5180.851 kb on + strand at 5180.852 kb on - strand at 5180.996 kb on + strand at 5180.996 kb on + strand at 5180.996 kb on + strand at 5180.996 kb on + strand at 5180.997 kb on - strand at 5180.997 kb on - strand at 5180.997 kb on - strand at 5180.997 kb on - strand at 5180.997 kb on - strand at 5181.005 kb on + strand at 5181.005 kb on + strand at 5181.005 kb on + strand at 5181.005 kb on + strand at 5181.005 kb on + strand at 5181.006 kb on - strand at 5181.006 kb on - strand at 5181.044 kb on - strand at 5181.076 kb on + strand at 5181.117 kb on + strand at 5181.117 kb on + strand at 5181.118 kb on - strand at 5181.122 kb on + strand at 5181.122 kb on + strand at 5181.122 kb on + strand at 5181.122 kb on + strand at 5181.123 kb on - strand at 5181.123 kb on - strand at 5181.123 kb on - strand at 5181.131 kb on + strand at 5181.131 kb on + strand at 5181.131 kb on + strand at 5181.131 kb on + strand at 5181.132 kb on - strand at 5181.132 kb on - strand at 5181.132 kb on - strand at 5181.217 kb on + strand, within PfGW456L13_4644 at 5181.217 kb on + strand, within PfGW456L13_4644 at 5181.217 kb on + strand, within PfGW456L13_4644 at 5181.217 kb on + strand, within PfGW456L13_4644 at 5181.218 kb on - strand, within PfGW456L13_4644 at 5181.218 kb on - strand, within PfGW456L13_4644 at 5181.237 kb on - strand, within PfGW456L13_4644 at 5181.237 kb on - strand, within PfGW456L13_4644 at 5181.237 kb on - strand, within PfGW456L13_4644 at 5181.259 kb on + strand, within PfGW456L13_4644 at 5181.382 kb on - strand, within PfGW456L13_4644 at 5181.432 kb on - strand, within PfGW456L13_4644 at 5181.460 kb on - strand, within PfGW456L13_4644 at 5181.460 kb on - strand, within PfGW456L13_4644 at 5181.472 kb on - strand, within PfGW456L13_4644 at 5181.472 kb on - strand, within PfGW456L13_4644 at 5181.497 kb on + strand at 5181.511 kb on + strand at 5181.534 kb on - strand at 5181.566 kb on + strand at 5181.567 kb on - strand at 5181.651 kb on + strand at 5181.651 kb on + strand at 5181.652 kb on - strand at 5181.652 kb on - strand at 5181.652 kb on - strand at 5181.720 kb on + strand, within PfGW456L13_4645 at 5181.721 kb on - strand, within PfGW456L13_4645 at 5181.721 kb on - strand, within PfGW456L13_4645 at 5181.744 kb on + strand, within PfGW456L13_4645 at 5181.744 kb on + strand, within PfGW456L13_4645 at 5181.744 kb on + strand, within PfGW456L13_4645 at 5181.744 kb on + strand, within PfGW456L13_4645 at 5181.744 kb on + strand, within PfGW456L13_4645 at 5181.745 kb on - strand, within PfGW456L13_4645 at 5181.745 kb on - strand, within PfGW456L13_4645
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 5,179,144 - PfGW456L13_4641 0.77 +0.6 5,179,293 - +3.1 5,179,383 + +1.2 5,179,383 + +0.8 5,179,383 + -2.3 5,179,384 - -1.0 5,179,384 - +1.2 5,179,421 + -1.3 5,179,473 - +0.2 5,179,513 + +1.5 5,179,513 + -0.7 5,179,513 + -1.2 5,179,521 - +1.0 5,179,521 - +0.8 5,179,521 - +2.0 5,179,521 - -1.7 5,179,545 + +0.6 5,179,545 + -1.7 5,179,607 - -1.0 5,179,607 - -0.3 5,179,612 - -0.2 5,179,625 - +1.9 5,179,625 - +3.4 5,179,656 + PfGW456L13_4642 0.12 +1.5 5,179,656 + PfGW456L13_4642 0.12 -0.6 5,179,826 + +1.3 5,179,833 + +0.4 5,179,837 + -1.2 5,179,837 + +0.3 5,179,837 + +0.1 5,179,844 + -0.3 5,179,853 + -1.6 5,179,857 - -1.1 5,179,991 - -0.8 5,179,991 - +0.5 5,179,991 - +0.0 5,180,017 + +0.9 5,180,107 + -0.1 5,180,107 + -0.4 5,180,108 - PfGW456L13_4643 0.12 -2.5 5,180,108 - PfGW456L13_4643 0.12 +2.9 5,180,210 - PfGW456L13_4643 0.23 +2.0 5,180,218 + PfGW456L13_4643 0.24 -0.1 5,180,218 + PfGW456L13_4643 0.24 +0.6 5,180,218 + PfGW456L13_4643 0.24 -0.3 5,180,218 + PfGW456L13_4643 0.24 -0.1 5,180,219 - PfGW456L13_4643 0.24 +1.5 5,180,219 - PfGW456L13_4643 0.24 +0.3 5,180,219 - PfGW456L13_4643 0.24 -3.8 5,180,275 + PfGW456L13_4643 0.30 -1.8 5,180,275 + PfGW456L13_4643 0.30 +0.2 5,180,275 + PfGW456L13_4643 0.30 +0.4 5,180,275 + PfGW456L13_4643 0.30 +1.3 5,180,399 - PfGW456L13_4643 0.43 -0.0 5,180,453 - PfGW456L13_4643 0.48 -1.0 5,180,453 - PfGW456L13_4643 0.48 +0.6 5,180,506 + PfGW456L13_4643 0.54 -1.6 5,180,506 + PfGW456L13_4643 0.54 -2.0 5,180,506 + PfGW456L13_4643 0.54 -1.0 5,180,506 + PfGW456L13_4643 0.54 -2.3 5,180,507 - PfGW456L13_4643 0.54 -3.0 5,180,507 - PfGW456L13_4643 0.54 -0.0 5,180,507 - PfGW456L13_4643 0.54 +1.5 5,180,507 - PfGW456L13_4643 0.54 +0.3 5,180,569 + PfGW456L13_4643 0.61 -0.2 5,180,570 - PfGW456L13_4643 0.61 +0.7 5,180,570 - PfGW456L13_4643 0.61 -0.3 5,180,570 - PfGW456L13_4643 0.61 -3.6 5,180,600 - PfGW456L13_4643 0.64 +2.5 5,180,770 + PfGW456L13_4643 0.82 -2.7 5,180,770 + PfGW456L13_4643 0.82 -1.9 5,180,770 + PfGW456L13_4643 0.82 -0.8 5,180,770 + PfGW456L13_4643 0.82 -2.5 5,180,770 + PfGW456L13_4643 0.82 -0.4 5,180,771 - PfGW456L13_4643 0.82 -3.0 5,180,771 - PfGW456L13_4643 0.82 +0.2 5,180,771 - PfGW456L13_4643 0.82 +0.4 5,180,771 - PfGW456L13_4643 0.82 +1.6 5,180,771 - PfGW456L13_4643 0.82 +0.8 5,180,771 - PfGW456L13_4643 0.82 +0.3 5,180,771 - PfGW456L13_4643 0.82 -0.5 5,180,771 - PfGW456L13_4643 0.82 +1.2 5,180,771 - PfGW456L13_4643 0.82 -0.4 5,180,771 - PfGW456L13_4643 0.82 +1.0 5,180,771 - PfGW456L13_4643 0.82 +1.6 5,180,851 + +0.2 5,180,852 - -1.3 5,180,996 + -0.1 5,180,996 + -0.9 5,180,996 + -2.0 5,180,996 + -3.5 5,180,997 - +0.4 5,180,997 - +1.0 5,180,997 - -1.8 5,180,997 - +3.9 5,180,997 - +0.3 5,181,005 + +0.9 5,181,005 + +1.1 5,181,005 + -1.0 5,181,005 + -0.9 5,181,005 + -0.2 5,181,006 - -3.2 5,181,006 - -0.7 5,181,044 - -2.4 5,181,076 + -2.0 5,181,117 + +0.9 5,181,117 + -0.2 5,181,118 - +0.2 5,181,122 + -2.5 5,181,122 + +0.2 5,181,122 + -0.4 5,181,122 + -0.7 5,181,123 - +0.7 5,181,123 - -0.4 5,181,123 - -0.6 5,181,131 + -0.5 5,181,131 + +0.4 5,181,131 + -1.6 5,181,131 + -1.3 5,181,132 - +0.5 5,181,132 - -0.5 5,181,132 - -1.3 5,181,217 + PfGW456L13_4644 0.16 -0.1 5,181,217 + PfGW456L13_4644 0.16 +2.1 5,181,217 + PfGW456L13_4644 0.16 +0.9 5,181,217 + PfGW456L13_4644 0.16 -2.4 5,181,218 - PfGW456L13_4644 0.16 +2.6 5,181,218 - PfGW456L13_4644 0.16 -2.9 5,181,237 - PfGW456L13_4644 0.22 -0.9 5,181,237 - PfGW456L13_4644 0.22 +2.6 5,181,237 - PfGW456L13_4644 0.22 +1.1 5,181,259 + PfGW456L13_4644 0.28 -0.2 5,181,382 - PfGW456L13_4644 0.63 +1.6 5,181,432 - PfGW456L13_4644 0.77 +1.1 5,181,460 - PfGW456L13_4644 0.85 -2.5 5,181,460 - PfGW456L13_4644 0.85 +2.2 5,181,472 - PfGW456L13_4644 0.88 -0.2 5,181,472 - PfGW456L13_4644 0.88 -3.4 5,181,497 + +1.0 5,181,511 + -0.1 5,181,534 - +0.1 5,181,566 + -1.0 5,181,567 - -2.3 5,181,651 + -1.5 5,181,651 + -3.4 5,181,652 - +0.5 5,181,652 - +0.9 5,181,652 - +2.2 5,181,720 + PfGW456L13_4645 0.10 +0.8 5,181,721 - PfGW456L13_4645 0.10 +0.2 5,181,721 - PfGW456L13_4645 0.10 -1.6 5,181,744 + PfGW456L13_4645 0.12 +0.9 5,181,744 + PfGW456L13_4645 0.12 +0.2 5,181,744 + PfGW456L13_4645 0.12 -2.7 5,181,744 + PfGW456L13_4645 0.12 +1.0 5,181,744 + PfGW456L13_4645 0.12 +0.4 5,181,745 - PfGW456L13_4645 0.12 -0.3 5,181,745 - PfGW456L13_4645 0.12 +1.1
Or see this region's nucleotide sequence