Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_3863

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_3861 and PfGW456L13_3862 are separated by 43 nucleotidesPfGW456L13_3862 and PfGW456L13_3863 are separated by 268 nucleotides PfGW456L13_3861 - putative membrane protein, at 4,324,256 to 4,324,813 _3861 PfGW456L13_3862 - DoxX family protein, at 4,324,857 to 4,325,273 _3862 PfGW456L13_3863 - hypothetical protein, at 4,325,542 to 4,325,808 _3863 Position (kb) 4325 4326Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4324.665 kb on + strand, within PfGW456L13_3861at 4324.665 kb on + strand, within PfGW456L13_3861at 4324.665 kb on + strand, within PfGW456L13_3861at 4324.665 kb on + strand, within PfGW456L13_3861at 4324.665 kb on + strand, within PfGW456L13_3861at 4324.665 kb on + strand, within PfGW456L13_3861at 4324.665 kb on + strand, within PfGW456L13_3861at 4324.665 kb on + strand, within PfGW456L13_3861at 4324.665 kb on + strand, within PfGW456L13_3861at 4324.665 kb on + strand, within PfGW456L13_3861at 4324.666 kb on - strand, within PfGW456L13_3861at 4324.666 kb on - strand, within PfGW456L13_3861at 4324.666 kb on - strand, within PfGW456L13_3861at 4324.666 kb on - strand, within PfGW456L13_3861at 4324.666 kb on - strand, within PfGW456L13_3861at 4324.666 kb on - strand, within PfGW456L13_3861at 4324.666 kb on - strand, within PfGW456L13_3861at 4324.666 kb on - strand, within PfGW456L13_3861at 4324.864 kb on + strandat 4324.864 kb on + strandat 4324.864 kb on + strandat 4324.865 kb on - strandat 4324.865 kb on - strandat 4324.865 kb on - strandat 4325.024 kb on + strand, within PfGW456L13_3862at 4325.025 kb on - strand, within PfGW456L13_3862at 4325.161 kb on + strand, within PfGW456L13_3862at 4325.363 kb on + strandat 4325.363 kb on + strandat 4325.363 kb on + strandat 4325.363 kb on + strandat 4325.363 kb on + strandat 4325.363 kb on + strandat 4325.363 kb on + strandat 4325.364 kb on - strandat 4325.364 kb on - strandat 4325.364 kb on - strandat 4325.364 kb on - strandat 4325.364 kb on - strandat 4325.364 kb on - strandat 4325.543 kb on + strandat 4325.543 kb on + strandat 4325.543 kb on + strandat 4325.544 kb on - strandat 4325.544 kb on - strandat 4325.563 kb on - strandat 4325.851 kb on - strandat 4326.079 kb on + strandat 4326.079 kb on + strandat 4326.080 kb on - strandat 4326.086 kb on - strandat 4326.137 kb on + strandat 4326.138 kb on - strandat 4326.201 kb on + strandat 4326.201 kb on + strandat 4326.201 kb on + strandat 4326.201 kb on + strandat 4326.202 kb on - strandat 4326.202 kb on - strandat 4326.226 kb on + strandat 4326.226 kb on + strandat 4326.226 kb on + strandat 4326.226 kb on + strandat 4326.226 kb on + strandat 4326.227 kb on - strandat 4326.227 kb on - strandat 4326.255 kb on + strandat 4326.270 kb on + strandat 4326.270 kb on + strandat 4326.270 kb on + strandat 4326.270 kb on + strandat 4326.270 kb on + strandat 4326.270 kb on + strandat 4326.270 kb on + strandat 4326.271 kb on - strandat 4326.271 kb on - strandat 4326.271 kb on - strandat 4326.271 kb on - strandat 4326.271 kb on - strandat 4326.271 kb on - strandat 4326.271 kb on - strandat 4326.271 kb on - strandat 4326.271 kb on - strandat 4326.332 kb on + strandat 4326.332 kb on + strandat 4326.332 kb on + strandat 4326.339 kb on + strandat 4326.339 kb on + strandat 4326.339 kb on + strandat 4326.339 kb on + strandat 4326.340 kb on - strandat 4326.340 kb on - strandat 4326.411 kb on + strandat 4326.412 kb on - strandat 4326.412 kb on - strandat 4326.412 kb on - strandat 4326.412 kb on - strandat 4326.412 kb on - strandat 4326.423 kb on + strandat 4326.423 kb on + strandat 4326.423 kb on + strandat 4326.423 kb on + strandat 4326.482 kb on + strandat 4326.482 kb on + strandat 4326.483 kb on - strandat 4326.483 kb on - strandat 4326.483 kb on - strandat 4326.483 kb on - strandat 4326.483 kb on - strandat 4326.483 kb on - strandat 4326.554 kb on + strandat 4326.554 kb on + strandat 4326.554 kb on + strandat 4326.555 kb on - strandat 4326.555 kb on - strandat 4326.610 kb on + strandat 4326.610 kb on + strandat 4326.610 kb on + strandat 4326.625 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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4,324,665 + PfGW456L13_3861 0.73 -0.3
4,324,665 + PfGW456L13_3861 0.73 -0.1
4,324,665 + PfGW456L13_3861 0.73 +1.3
4,324,665 + PfGW456L13_3861 0.73 -1.0
4,324,665 + PfGW456L13_3861 0.73 -0.1
4,324,665 + PfGW456L13_3861 0.73 +0.5
4,324,665 + PfGW456L13_3861 0.73 +1.7
4,324,665 + PfGW456L13_3861 0.73 -3.1
4,324,665 + PfGW456L13_3861 0.73 -3.0
4,324,665 + PfGW456L13_3861 0.73 -1.3
4,324,666 - PfGW456L13_3861 0.73 +0.9
4,324,666 - PfGW456L13_3861 0.73 +0.9
4,324,666 - PfGW456L13_3861 0.73 -1.5
4,324,666 - PfGW456L13_3861 0.73 -1.1
4,324,666 - PfGW456L13_3861 0.73 +0.9
4,324,666 - PfGW456L13_3861 0.73 -1.1
4,324,666 - PfGW456L13_3861 0.73 -3.5
4,324,666 - PfGW456L13_3861 0.73 -2.7
4,324,864 + -0.0
4,324,864 + -1.4
4,324,864 + +0.2
4,324,865 - +1.2
4,324,865 - -0.3
4,324,865 - -0.3
4,325,024 + PfGW456L13_3862 0.40 +0.3
4,325,025 - PfGW456L13_3862 0.40 -1.1
4,325,161 + PfGW456L13_3862 0.73 -1.1
4,325,363 + +1.0
4,325,363 + -1.1
4,325,363 + +0.9
4,325,363 + -2.0
4,325,363 + -1.4
4,325,363 + +1.9
4,325,363 + +0.2
4,325,364 - -0.8
4,325,364 - +0.2
4,325,364 - -2.5
4,325,364 - +0.1
4,325,364 - +0.4
4,325,364 - -0.5
4,325,543 + +0.1
4,325,543 + +0.1
4,325,543 + +0.4
4,325,544 - -1.0
4,325,544 - +0.5
4,325,563 - +0.4
4,325,851 - -2.7
4,326,079 + +0.1
4,326,079 + -3.0
4,326,080 - -0.8
4,326,086 - +1.0
4,326,137 + +0.7
4,326,138 - +0.8
4,326,201 + +0.6
4,326,201 + +0.0
4,326,201 + -1.5
4,326,201 + -0.5
4,326,202 - +0.0
4,326,202 - +1.6
4,326,226 + +1.6
4,326,226 + -0.1
4,326,226 + +0.1
4,326,226 + -2.7
4,326,226 + -0.9
4,326,227 - +0.2
4,326,227 - -1.5
4,326,255 + -0.1
4,326,270 + -0.7
4,326,270 + -2.4
4,326,270 + -3.3
4,326,270 + -1.6
4,326,270 + -0.7
4,326,270 + +1.6
4,326,270 + -3.6
4,326,271 - +0.5
4,326,271 - -1.4
4,326,271 - -0.7
4,326,271 - +0.2
4,326,271 - +0.3
4,326,271 - +0.4
4,326,271 - +0.9
4,326,271 - +0.1
4,326,271 - +0.3
4,326,332 + +0.4
4,326,332 + +0.8
4,326,332 + +0.6
4,326,339 + -0.3
4,326,339 + +1.4
4,326,339 + +0.7
4,326,339 + -1.1
4,326,340 - -1.1
4,326,340 - +0.9
4,326,411 + +0.7
4,326,412 - +1.0
4,326,412 - +0.6
4,326,412 - +0.0
4,326,412 - +1.0
4,326,412 - -0.3
4,326,423 + -0.1
4,326,423 + -3.3
4,326,423 + +1.4
4,326,423 + -1.8
4,326,482 + +0.1
4,326,482 + -0.3
4,326,483 - +1.6
4,326,483 - +2.1
4,326,483 - -2.7
4,326,483 - -0.1
4,326,483 - -2.0
4,326,483 - +1.3
4,326,554 + +1.2
4,326,554 + -1.7
4,326,554 + -0.0
4,326,555 - +2.5
4,326,555 - -0.5
4,326,610 + +1.8
4,326,610 + -0.7
4,326,610 + -3.9
4,326,625 + +1.7

Or see this region's nucleotide sequence