Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_366 and PfGW456L13_367 overlap by 4 nucleotides PfGW456L13_367 and PfGW456L13_5160 are separated by 103 nucleotides PfGW456L13_5160 and PfGW456L13_368 are separated by 321 nucleotides PfGW456L13_368 and PfGW456L13_369 are separated by 92 nucleotides PfGW456L13_369 and PfGW456L13_370 are separated by 30 nucleotides
PfGW456L13_366 - A/G-specific adenine glycosylase (EC 3.2.2.-), at 426,544 to 427,611
_366
PfGW456L13_367 - FIG001341: Probable Fe(2+)-trafficking protein YggX, at 427,608 to 427,880
_367
PfGW456L13_5160 - tRNA-Phe-GAA, at 427,984 to 428,056
_5160
PfGW456L13_368 - hypothetical protein, at 428,378 to 429,457
_368
PfGW456L13_369 - Putative membrane protein YfcA, at 429,550 to 430,335
_369
PfGW456L13_370 - putative exported protein, at 430,366 to 430,764
_370
Position (kb) 428
429
430 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 427.514 kb on - strand at 427.515 kb on + strand at 427.515 kb on + strand at 427.515 kb on + strand at 427.515 kb on + strand at 427.800 kb on + strand, within PfGW456L13_367 at 427.800 kb on + strand, within PfGW456L13_367 at 427.800 kb on + strand, within PfGW456L13_367 at 427.801 kb on - strand, within PfGW456L13_367 at 427.824 kb on + strand, within PfGW456L13_367 at 427.824 kb on + strand, within PfGW456L13_367 at 427.824 kb on + strand, within PfGW456L13_367 at 427.825 kb on - strand, within PfGW456L13_367 at 427.825 kb on - strand, within PfGW456L13_367 at 427.825 kb on - strand, within PfGW456L13_367 at 427.825 kb on - strand, within PfGW456L13_367 at 427.860 kb on + strand at 427.861 kb on - strand at 427.861 kb on - strand at 427.861 kb on - strand at 428.200 kb on + strand at 428.201 kb on - strand at 428.272 kb on + strand at 428.297 kb on + strand at 428.297 kb on + strand at 428.298 kb on - strand at 428.298 kb on - strand at 428.298 kb on - strand at 428.298 kb on - strand at 428.298 kb on - strand at 428.298 kb on - strand at 428.298 kb on - strand at 428.298 kb on - strand at 428.357 kb on + strand at 428.358 kb on - strand at 428.358 kb on - strand at 428.358 kb on - strand at 428.372 kb on + strand at 428.372 kb on + strand at 428.372 kb on + strand at 428.372 kb on + strand at 428.372 kb on + strand at 428.372 kb on + strand at 428.372 kb on + strand at 428.372 kb on + strand at 428.372 kb on + strand at 428.372 kb on + strand at 428.372 kb on + strand at 428.372 kb on + strand at 428.372 kb on + strand at 428.373 kb on - strand at 428.373 kb on - strand at 428.373 kb on - strand at 428.373 kb on - strand at 428.373 kb on - strand at 428.373 kb on - strand at 428.373 kb on - strand at 428.373 kb on - strand at 428.373 kb on - strand at 428.373 kb on - strand at 428.373 kb on - strand at 428.373 kb on - strand at 428.373 kb on - strand at 428.373 kb on - strand at 428.373 kb on - strand at 428.373 kb on - strand at 428.373 kb on - strand at 428.373 kb on - strand at 428.562 kb on + strand, within PfGW456L13_368 at 428.562 kb on + strand, within PfGW456L13_368 at 428.562 kb on + strand, within PfGW456L13_368 at 428.563 kb on - strand at 428.563 kb on - strand, within PfGW456L13_368 at 428.563 kb on - strand, within PfGW456L13_368 at 428.563 kb on - strand, within PfGW456L13_368 at 428.606 kb on + strand, within PfGW456L13_368 at 428.606 kb on + strand, within PfGW456L13_368 at 428.607 kb on - strand, within PfGW456L13_368 at 428.607 kb on - strand, within PfGW456L13_368 at 428.781 kb on - strand, within PfGW456L13_368 at 428.781 kb on - strand, within PfGW456L13_368 at 428.911 kb on + strand, within PfGW456L13_368 at 428.912 kb on - strand, within PfGW456L13_368 at 428.912 kb on - strand, within PfGW456L13_368 at 428.912 kb on - strand, within PfGW456L13_368 at 428.924 kb on + strand, within PfGW456L13_368 at 428.979 kb on + strand, within PfGW456L13_368 at 428.979 kb on + strand, within PfGW456L13_368 at 428.979 kb on + strand, within PfGW456L13_368 at 428.979 kb on + strand, within PfGW456L13_368 at 428.979 kb on + strand, within PfGW456L13_368 at 428.980 kb on - strand, within PfGW456L13_368 at 428.980 kb on - strand, within PfGW456L13_368 at 428.980 kb on - strand, within PfGW456L13_368 at 428.980 kb on - strand, within PfGW456L13_368 at 428.980 kb on - strand, within PfGW456L13_368 at 428.980 kb on - strand, within PfGW456L13_368 at 428.980 kb on - strand, within PfGW456L13_368 at 428.980 kb on - strand, within PfGW456L13_368 at 428.982 kb on + strand, within PfGW456L13_368 at 428.982 kb on + strand, within PfGW456L13_368 at 429.014 kb on - strand, within PfGW456L13_368 at 429.030 kb on + strand, within PfGW456L13_368 at 429.030 kb on + strand, within PfGW456L13_368 at 429.040 kb on - strand, within PfGW456L13_368 at 429.103 kb on + strand, within PfGW456L13_368 at 429.104 kb on - strand, within PfGW456L13_368 at 429.193 kb on + strand, within PfGW456L13_368 at 429.194 kb on - strand, within PfGW456L13_368 at 429.194 kb on - strand, within PfGW456L13_368 at 429.200 kb on + strand, within PfGW456L13_368 at 429.200 kb on + strand, within PfGW456L13_368 at 429.200 kb on + strand, within PfGW456L13_368 at 429.248 kb on + strand, within PfGW456L13_368 at 429.249 kb on - strand, within PfGW456L13_368 at 429.249 kb on - strand, within PfGW456L13_368 at 429.249 kb on - strand, within PfGW456L13_368 at 429.249 kb on - strand, within PfGW456L13_368 at 429.249 kb on - strand, within PfGW456L13_368 at 429.249 kb on - strand, within PfGW456L13_368 at 429.293 kb on + strand, within PfGW456L13_368 at 429.328 kb on + strand, within PfGW456L13_368 at 429.328 kb on + strand, within PfGW456L13_368 at 429.328 kb on + strand, within PfGW456L13_368 at 429.329 kb on - strand, within PfGW456L13_368 at 429.329 kb on - strand, within PfGW456L13_368 at 429.463 kb on + strand at 429.466 kb on - strand at 429.514 kb on + strand at 429.514 kb on + strand at 429.514 kb on + strand at 429.514 kb on + strand at 429.514 kb on + strand at 429.515 kb on - strand at 429.515 kb on - strand at 429.542 kb on + strand at 429.542 kb on + strand at 429.542 kb on + strand at 429.542 kb on + strand at 429.543 kb on - strand at 429.543 kb on - strand at 429.543 kb on - strand at 429.543 kb on - strand at 429.543 kb on - strand at 429.543 kb on - strand at 429.543 kb on - strand at 429.644 kb on + strand, within PfGW456L13_369 at 429.644 kb on + strand, within PfGW456L13_369 at 429.644 kb on + strand, within PfGW456L13_369 at 429.644 kb on + strand, within PfGW456L13_369 at 429.645 kb on - strand, within PfGW456L13_369 at 429.645 kb on - strand, within PfGW456L13_369 at 429.645 kb on - strand, within PfGW456L13_369 at 429.645 kb on - strand, within PfGW456L13_369 at 429.645 kb on - strand, within PfGW456L13_369 at 429.711 kb on - strand, within PfGW456L13_369 at 429.810 kb on + strand, within PfGW456L13_369 at 429.811 kb on - strand, within PfGW456L13_369 at 429.816 kb on + strand, within PfGW456L13_369 at 429.817 kb on - strand, within PfGW456L13_369 at 429.843 kb on + strand, within PfGW456L13_369 at 429.843 kb on + strand, within PfGW456L13_369 at 429.851 kb on + strand, within PfGW456L13_369 at 429.851 kb on + strand, within PfGW456L13_369 at 429.851 kb on + strand, within PfGW456L13_369 at 429.851 kb on + strand, within PfGW456L13_369 at 429.852 kb on - strand, within PfGW456L13_369 at 429.868 kb on + strand, within PfGW456L13_369 at 429.868 kb on + strand, within PfGW456L13_369 at 429.868 kb on + strand, within PfGW456L13_369 at 429.869 kb on - strand, within PfGW456L13_369 at 429.869 kb on - strand, within PfGW456L13_369 at 429.972 kb on + strand, within PfGW456L13_369 at 429.972 kb on + strand, within PfGW456L13_369 at 429.972 kb on + strand, within PfGW456L13_369 at 429.972 kb on + strand, within PfGW456L13_369 at 429.972 kb on + strand, within PfGW456L13_369 at 429.973 kb on - strand, within PfGW456L13_369 at 429.973 kb on - strand, within PfGW456L13_369 at 429.974 kb on + strand, within PfGW456L13_369 at 429.974 kb on + strand, within PfGW456L13_369 at 429.974 kb on + strand, within PfGW456L13_369 at 429.974 kb on + strand, within PfGW456L13_369 at 429.974 kb on + strand, within PfGW456L13_369 at 429.974 kb on + strand, within PfGW456L13_369 at 429.974 kb on + strand, within PfGW456L13_369 at 429.974 kb on + strand, within PfGW456L13_369 at 429.975 kb on - strand, within PfGW456L13_369 at 429.975 kb on - strand, within PfGW456L13_369 at 429.975 kb on - strand, within PfGW456L13_369 at 430.002 kb on + strand, within PfGW456L13_369 at 430.016 kb on + strand, within PfGW456L13_369 at 430.017 kb on - strand, within PfGW456L13_369 at 430.017 kb on - strand, within PfGW456L13_369 at 430.080 kb on + strand, within PfGW456L13_369 at 430.080 kb on + strand, within PfGW456L13_369 at 430.080 kb on + strand, within PfGW456L13_369 at 430.080 kb on + strand, within PfGW456L13_369 at 430.081 kb on - strand, within PfGW456L13_369 at 430.081 kb on - strand, within PfGW456L13_369 at 430.110 kb on + strand, within PfGW456L13_369 at 430.111 kb on - strand, within PfGW456L13_369 at 430.123 kb on - strand, within PfGW456L13_369 at 430.140 kb on - strand, within PfGW456L13_369 at 430.269 kb on - strand at 430.269 kb on - strand at 430.269 kb on - strand at 430.306 kb on + strand at 430.306 kb on + strand at 430.306 kb on + strand at 430.307 kb on - strand at 430.307 kb on - strand at 430.317 kb on + strand at 430.317 kb on + strand at 430.367 kb on + strand at 430.368 kb on - strand at 430.368 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 427,514 - +0.9 427,515 + +0.7 427,515 + -2.0 427,515 + +1.1 427,515 + -0.0 427,800 + PfGW456L13_367 0.70 +0.6 427,800 + PfGW456L13_367 0.70 +0.0 427,800 + PfGW456L13_367 0.70 -1.8 427,801 - PfGW456L13_367 0.71 -2.1 427,824 + PfGW456L13_367 0.79 -1.4 427,824 + PfGW456L13_367 0.79 -0.8 427,824 + PfGW456L13_367 0.79 -1.4 427,825 - PfGW456L13_367 0.79 -2.6 427,825 - PfGW456L13_367 0.79 +0.6 427,825 - PfGW456L13_367 0.79 +0.7 427,825 - PfGW456L13_367 0.79 -2.0 427,860 + -0.5 427,861 - -0.4 427,861 - -0.8 427,861 - -2.8 428,200 + -1.3 428,201 - -1.4 428,272 + +0.7 428,297 + +0.7 428,297 + -0.9 428,298 - +1.6 428,298 - +0.8 428,298 - +0.2 428,298 - +0.2 428,298 - +0.8 428,298 - +2.2 428,298 - +2.0 428,298 - +1.1 428,357 + -1.3 428,358 - +1.5 428,358 - -1.1 428,358 - -0.7 428,372 + -0.8 428,372 + -0.5 428,372 + -0.4 428,372 + -1.6 428,372 + +1.0 428,372 + -2.3 428,372 + -0.1 428,372 + -2.4 428,372 + +0.8 428,372 + -2.9 428,372 + +4.4 428,372 + -1.3 428,372 + -1.1 428,373 - -0.0 428,373 - -0.6 428,373 - +0.7 428,373 - +0.6 428,373 - +2.6 428,373 - +2.6 428,373 - +1.7 428,373 - +1.6 428,373 - +1.6 428,373 - +2.1 428,373 - -0.6 428,373 - +0.1 428,373 - -0.3 428,373 - -3.0 428,373 - +0.6 428,373 - +0.2 428,373 - -0.9 428,373 - +1.0 428,562 + PfGW456L13_368 0.17 -1.5 428,562 + PfGW456L13_368 0.17 +0.6 428,562 + PfGW456L13_368 0.17 -0.4 428,563 - -0.4 428,563 - PfGW456L13_368 0.17 +0.9 428,563 - PfGW456L13_368 0.17 +1.2 428,563 - PfGW456L13_368 0.17 -1.0 428,606 + PfGW456L13_368 0.21 +1.4 428,606 + PfGW456L13_368 0.21 -0.1 428,607 - PfGW456L13_368 0.21 +0.7 428,607 - PfGW456L13_368 0.21 +0.5 428,781 - PfGW456L13_368 0.37 -0.4 428,781 - PfGW456L13_368 0.37 -3.4 428,911 + PfGW456L13_368 0.49 -2.9 428,912 - PfGW456L13_368 0.49 -2.6 428,912 - PfGW456L13_368 0.49 -0.3 428,912 - PfGW456L13_368 0.49 -2.1 428,924 + PfGW456L13_368 0.51 +0.6 428,979 + PfGW456L13_368 0.56 -1.7 428,979 + PfGW456L13_368 0.56 +0.2 428,979 + PfGW456L13_368 0.56 -2.4 428,979 + PfGW456L13_368 0.56 -0.1 428,979 + PfGW456L13_368 0.56 +0.8 428,980 - PfGW456L13_368 0.56 +1.1 428,980 - PfGW456L13_368 0.56 -0.1 428,980 - PfGW456L13_368 0.56 +0.8 428,980 - PfGW456L13_368 0.56 -2.4 428,980 - PfGW456L13_368 0.56 +0.6 428,980 - PfGW456L13_368 0.56 -1.9 428,980 - PfGW456L13_368 0.56 -1.6 428,980 - PfGW456L13_368 0.56 +1.0 428,982 + PfGW456L13_368 0.56 -3.2 428,982 + PfGW456L13_368 0.56 -3.5 429,014 - PfGW456L13_368 0.59 +0.7 429,030 + PfGW456L13_368 0.60 +0.4 429,030 + PfGW456L13_368 0.60 +0.9 429,040 - PfGW456L13_368 0.61 +0.1 429,103 + PfGW456L13_368 0.67 -0.0 429,104 - PfGW456L13_368 0.67 -3.5 429,193 + PfGW456L13_368 0.75 -0.3 429,194 - PfGW456L13_368 0.76 +1.4 429,194 - PfGW456L13_368 0.76 +0.1 429,200 + PfGW456L13_368 0.76 +0.7 429,200 + PfGW456L13_368 0.76 -1.3 429,200 + PfGW456L13_368 0.76 +2.6 429,248 + PfGW456L13_368 0.81 +0.8 429,249 - PfGW456L13_368 0.81 +0.6 429,249 - PfGW456L13_368 0.81 -0.9 429,249 - PfGW456L13_368 0.81 +0.2 429,249 - PfGW456L13_368 0.81 -1.8 429,249 - PfGW456L13_368 0.81 -1.7 429,249 - PfGW456L13_368 0.81 -4.0 429,293 + PfGW456L13_368 0.85 -0.8 429,328 + PfGW456L13_368 0.88 -0.1 429,328 + PfGW456L13_368 0.88 +0.6 429,328 + PfGW456L13_368 0.88 +1.4 429,329 - PfGW456L13_368 0.88 -3.5 429,329 - PfGW456L13_368 0.88 -2.1 429,463 + -1.5 429,466 - -0.3 429,514 + -1.4 429,514 + +0.5 429,514 + +0.4 429,514 + +1.0 429,514 + +1.4 429,515 - -1.7 429,515 - +0.5 429,542 + -1.0 429,542 + +0.9 429,542 + +1.1 429,542 + -0.6 429,543 - -0.4 429,543 - -1.9 429,543 - -0.1 429,543 - -0.5 429,543 - +0.4 429,543 - +0.7 429,543 - +1.0 429,644 + PfGW456L13_369 0.12 -0.3 429,644 + PfGW456L13_369 0.12 +1.3 429,644 + PfGW456L13_369 0.12 -0.7 429,644 + PfGW456L13_369 0.12 -1.5 429,645 - PfGW456L13_369 0.12 +1.9 429,645 - PfGW456L13_369 0.12 -0.1 429,645 - PfGW456L13_369 0.12 +1.9 429,645 - PfGW456L13_369 0.12 -0.5 429,645 - PfGW456L13_369 0.12 -0.5 429,711 - PfGW456L13_369 0.20 -0.0 429,810 + PfGW456L13_369 0.33 +0.5 429,811 - PfGW456L13_369 0.33 -0.6 429,816 + PfGW456L13_369 0.34 -1.0 429,817 - PfGW456L13_369 0.34 +3.2 429,843 + PfGW456L13_369 0.37 -1.7 429,843 + PfGW456L13_369 0.37 +1.0 429,851 + PfGW456L13_369 0.38 +0.9 429,851 + PfGW456L13_369 0.38 -1.3 429,851 + PfGW456L13_369 0.38 -0.3 429,851 + PfGW456L13_369 0.38 -2.4 429,852 - PfGW456L13_369 0.38 -0.4 429,868 + PfGW456L13_369 0.40 +0.3 429,868 + PfGW456L13_369 0.40 +1.5 429,868 + PfGW456L13_369 0.40 +1.4 429,869 - PfGW456L13_369 0.41 +0.3 429,869 - PfGW456L13_369 0.41 -3.9 429,972 + PfGW456L13_369 0.54 +1.8 429,972 + PfGW456L13_369 0.54 -0.5 429,972 + PfGW456L13_369 0.54 -1.4 429,972 + PfGW456L13_369 0.54 -3.0 429,972 + PfGW456L13_369 0.54 +0.1 429,973 - PfGW456L13_369 0.54 +0.6 429,973 - PfGW456L13_369 0.54 +0.3 429,974 + PfGW456L13_369 0.54 +0.6 429,974 + PfGW456L13_369 0.54 -0.9 429,974 + PfGW456L13_369 0.54 +0.9 429,974 + PfGW456L13_369 0.54 -1.0 429,974 + PfGW456L13_369 0.54 +0.3 429,974 + PfGW456L13_369 0.54 -0.5 429,974 + PfGW456L13_369 0.54 -1.6 429,974 + PfGW456L13_369 0.54 +1.3 429,975 - PfGW456L13_369 0.54 -0.2 429,975 - PfGW456L13_369 0.54 +1.6 429,975 - PfGW456L13_369 0.54 -0.3 430,002 + PfGW456L13_369 0.58 +1.3 430,016 + PfGW456L13_369 0.59 -1.3 430,017 - PfGW456L13_369 0.59 -1.3 430,017 - PfGW456L13_369 0.59 +0.9 430,080 + PfGW456L13_369 0.67 -0.2 430,080 + PfGW456L13_369 0.67 +1.6 430,080 + PfGW456L13_369 0.67 -3.0 430,080 + PfGW456L13_369 0.67 +1.3 430,081 - PfGW456L13_369 0.68 -1.9 430,081 - PfGW456L13_369 0.68 -1.3 430,110 + PfGW456L13_369 0.71 +0.5 430,111 - PfGW456L13_369 0.71 +0.5 430,123 - PfGW456L13_369 0.73 +1.0 430,140 - PfGW456L13_369 0.75 +1.2 430,269 - -0.1 430,269 - +0.0 430,269 - +2.3 430,306 + +0.7 430,306 + +1.1 430,306 + +0.0 430,307 - +1.1 430,307 - +1.4 430,317 + -1.8 430,317 + +0.9 430,367 + -0.3 430,368 - -2.4 430,368 - -1.6
Or see this region's nucleotide sequence