Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_3353

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_3352 and PfGW456L13_3353 are separated by 25 nucleotidesPfGW456L13_3353 and PfGW456L13_3354 are separated by 147 nucleotidesPfGW456L13_3354 and PfGW456L13_3355 overlap by 34 nucleotides PfGW456L13_3352 - Isoquinoline 1-oxidoreductase beta subunit (EC 1.3.99.16), at 3,765,108 to 3,767,276 _3352 PfGW456L13_3353 - Isoquinoline 1-oxidoreductase alpha subunit (EC 1.3.99.16), at 3,767,302 to 3,767,757 _3353 PfGW456L13_3354 - hypothetical protein, at 3,767,905 to 3,768,021 _3354 PfGW456L13_3355 - NnrS protein involved in response to NO, at 3,767,988 to 3,769,142 _3355 Position (kb) 3767 3768Strain fitness (log2 ratio) -2 -1 0 1 2at 3766.316 kb on + strand, within PfGW456L13_3352at 3766.769 kb on - strand, within PfGW456L13_3352at 3767.091 kb on + strandat 3767.092 kb on - strandat 3767.117 kb on + strandat 3767.845 kb on - strandat 3767.895 kb on - strandat 3767.925 kb on + strand, within PfGW456L13_3354at 3767.926 kb on - strand, within PfGW456L13_3354at 3767.926 kb on - strandat 3767.926 kb on - strand, within PfGW456L13_3354at 3767.989 kb on + strandat 3767.989 kb on + strandat 3767.990 kb on - strandat 3768.047 kb on + strandat 3768.048 kb on - strandat 3768.048 kb on - strandat 3768.151 kb on - strand, within PfGW456L13_3355at 3768.151 kb on - strand, within PfGW456L13_3355at 3768.325 kb on + strand, within PfGW456L13_3355at 3768.326 kb on - strand, within PfGW456L13_3355at 3768.326 kb on - strand, within PfGW456L13_3355at 3768.334 kb on + strand, within PfGW456L13_3355at 3768.669 kb on - strand, within PfGW456L13_3355at 3768.717 kb on + strand, within PfGW456L13_3355at 3768.718 kb on - strand, within PfGW456L13_3355

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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3,766,316 + PfGW456L13_3352 0.56 -0.7
3,766,769 - PfGW456L13_3352 0.77 +0.1
3,767,091 + +1.0
3,767,092 - +0.5
3,767,117 + +2.7
3,767,845 - +0.7
3,767,895 - +1.4
3,767,925 + PfGW456L13_3354 0.17 +0.4
3,767,926 - PfGW456L13_3354 0.18 +1.4
3,767,926 - +2.4
3,767,926 - PfGW456L13_3354 0.18 +1.1
3,767,989 + +2.4
3,767,989 + +0.4
3,767,990 - +0.4
3,768,047 + +2.0
3,768,048 - +1.0
3,768,048 - +1.2
3,768,151 - PfGW456L13_3355 0.14 +1.1
3,768,151 - PfGW456L13_3355 0.14 +1.2
3,768,325 + PfGW456L13_3355 0.29 -0.6
3,768,326 - PfGW456L13_3355 0.29 +1.2
3,768,326 - PfGW456L13_3355 0.29 +0.5
3,768,334 + PfGW456L13_3355 0.30 +0.3
3,768,669 - PfGW456L13_3355 0.59 +1.3
3,768,717 + PfGW456L13_3355 0.63 +0.4
3,768,718 - PfGW456L13_3355 0.63 -2.2

Or see this region's nucleotide sequence