Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_317

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_316 and PfGW456L13_317 are separated by 10 nucleotidesPfGW456L13_317 and PfGW456L13_318 are separated by 17 nucleotides PfGW456L13_316 - N-formylglutamate deformylase (EC 3.5.1.68) (from data), at 370,216 to 371,019 _316 PfGW456L13_317 - Imidazolonepropionase (EC 3.5.2.7) (from data), at 371,030 to 372,235 _317 PfGW456L13_318 - Histidine transport protein (permease), at 372,253 to 373,659 _318 Position (kb) 371 372 373Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 370.036 kb on + strandat 370.080 kb on + strandat 370.081 kb on - strandat 370.081 kb on - strandat 370.106 kb on + strandat 370.106 kb on + strandat 370.106 kb on + strandat 370.107 kb on - strandat 370.107 kb on - strandat 370.153 kb on + strandat 370.153 kb on + strandat 370.153 kb on + strandat 370.153 kb on + strandat 370.153 kb on + strandat 370.153 kb on + strandat 370.153 kb on + strandat 370.153 kb on + strandat 370.153 kb on + strandat 370.153 kb on + strandat 370.153 kb on + strandat 370.153 kb on + strandat 370.153 kb on + strandat 370.153 kb on + strandat 370.153 kb on + strandat 370.154 kb on - strandat 370.154 kb on - strandat 370.154 kb on - strandat 370.154 kb on - strandat 370.154 kb on - strandat 370.154 kb on - strandat 370.154 kb on - strandat 370.154 kb on - strandat 370.154 kb on - strandat 370.154 kb on - strandat 370.159 kb on + strandat 370.159 kb on + strandat 370.159 kb on + strandat 370.160 kb on - strandat 370.160 kb on - strandat 370.160 kb on - strandat 370.160 kb on - strandat 370.160 kb on - strandat 370.160 kb on - strandat 370.160 kb on - strandat 370.226 kb on + strandat 370.226 kb on + strandat 370.226 kb on + strandat 370.227 kb on - strandat 370.227 kb on - strandat 370.334 kb on + strand, within PfGW456L13_316at 370.334 kb on + strand, within PfGW456L13_316at 370.334 kb on + strand, within PfGW456L13_316at 370.334 kb on + strand, within PfGW456L13_316at 370.334 kb on + strand, within PfGW456L13_316at 370.334 kb on + strand, within PfGW456L13_316at 370.334 kb on + strand, within PfGW456L13_316at 370.334 kb on + strand, within PfGW456L13_316at 370.334 kb on + strand, within PfGW456L13_316at 370.334 kb on + strand, within PfGW456L13_316at 370.335 kb on - strand, within PfGW456L13_316at 370.335 kb on - strand, within PfGW456L13_316at 370.335 kb on - strand, within PfGW456L13_316at 370.335 kb on - strand, within PfGW456L13_316at 370.335 kb on - strand, within PfGW456L13_316at 370.335 kb on - strand, within PfGW456L13_316at 370.335 kb on - strand, within PfGW456L13_316at 370.432 kb on + strand, within PfGW456L13_316at 370.432 kb on + strand, within PfGW456L13_316at 370.432 kb on + strand, within PfGW456L13_316at 370.433 kb on - strand, within PfGW456L13_316at 370.433 kb on - strand, within PfGW456L13_316at 370.433 kb on - strand, within PfGW456L13_316at 370.442 kb on + strand, within PfGW456L13_316at 370.442 kb on + strand, within PfGW456L13_316at 370.442 kb on + strand, within PfGW456L13_316at 370.442 kb on + strand, within PfGW456L13_316at 370.442 kb on + strand, within PfGW456L13_316at 370.442 kb on + strand, within PfGW456L13_316at 370.442 kb on + strand, within PfGW456L13_316at 370.442 kb on + strand, within PfGW456L13_316at 370.443 kb on - strand, within PfGW456L13_316at 370.443 kb on - strand, within PfGW456L13_316at 370.443 kb on - strand, within PfGW456L13_316at 370.443 kb on - strand, within PfGW456L13_316at 370.443 kb on - strand, within PfGW456L13_316at 370.649 kb on + strand, within PfGW456L13_316at 370.650 kb on - strand, within PfGW456L13_316at 370.674 kb on - strand, within PfGW456L13_316at 370.772 kb on + strand, within PfGW456L13_316at 370.773 kb on - strand, within PfGW456L13_316at 370.773 kb on - strand, within PfGW456L13_316at 370.868 kb on + strand, within PfGW456L13_316at 370.868 kb on + strand, within PfGW456L13_316at 370.868 kb on + strand, within PfGW456L13_316at 370.868 kb on + strand, within PfGW456L13_316at 370.869 kb on - strand, within PfGW456L13_316at 370.870 kb on + strand, within PfGW456L13_316at 370.870 kb on + strand, within PfGW456L13_316at 370.870 kb on + strand, within PfGW456L13_316at 370.871 kb on - strand, within PfGW456L13_316at 370.871 kb on - strand, within PfGW456L13_316at 370.871 kb on - strand, within PfGW456L13_316at 371.014 kb on - strandat 371.031 kb on + strandat 371.031 kb on + strandat 371.032 kb on - strandat 371.032 kb on - strandat 371.092 kb on - strandat 371.092 kb on - strandat 371.380 kb on - strand, within PfGW456L13_317at 371.563 kb on + strand, within PfGW456L13_317at 371.563 kb on + strand, within PfGW456L13_317at 371.604 kb on + strand, within PfGW456L13_317at 371.683 kb on + strand, within PfGW456L13_317at 371.683 kb on + strand, within PfGW456L13_317at 371.683 kb on + strand, within PfGW456L13_317at 371.684 kb on - strand, within PfGW456L13_317at 371.684 kb on - strand, within PfGW456L13_317at 371.685 kb on + strand, within PfGW456L13_317at 371.685 kb on + strand, within PfGW456L13_317at 371.685 kb on + strand, within PfGW456L13_317at 371.686 kb on - strand, within PfGW456L13_317at 371.686 kb on - strand, within PfGW456L13_317at 371.686 kb on - strand, within PfGW456L13_317at 371.686 kb on - strand, within PfGW456L13_317at 371.686 kb on - strand, within PfGW456L13_317at 371.686 kb on - strand, within PfGW456L13_317at 371.686 kb on - strand, within PfGW456L13_317at 371.686 kb on - strand, within PfGW456L13_317at 371.686 kb on - strand, within PfGW456L13_317at 371.707 kb on - strand, within PfGW456L13_317at 371.707 kb on - strand, within PfGW456L13_317at 371.707 kb on - strand, within PfGW456L13_317at 372.249 kb on + strandat 372.249 kb on + strandat 372.249 kb on + strandat 372.249 kb on + strandat 372.249 kb on + strandat 372.249 kb on + strandat 372.250 kb on - strandat 372.250 kb on - strandat 372.250 kb on - strandat 372.250 kb on - strandat 372.250 kb on - strandat 372.250 kb on - strandat 372.250 kb on - strandat 372.326 kb on + strandat 372.326 kb on + strandat 372.392 kb on + strandat 372.447 kb on - strand, within PfGW456L13_318at 372.605 kb on + strand, within PfGW456L13_318at 372.605 kb on + strand, within PfGW456L13_318at 372.606 kb on - strand, within PfGW456L13_318at 372.606 kb on - strand, within PfGW456L13_318at 372.606 kb on - strand, within PfGW456L13_318at 372.606 kb on - strand, within PfGW456L13_318at 372.914 kb on + strand, within PfGW456L13_318at 372.914 kb on + strand, within PfGW456L13_318at 372.914 kb on + strand, within PfGW456L13_318at 372.914 kb on + strand, within PfGW456L13_318at 372.914 kb on + strand, within PfGW456L13_318at 372.914 kb on + strand, within PfGW456L13_318at 372.915 kb on - strand, within PfGW456L13_318at 372.915 kb on - strand, within PfGW456L13_318at 372.915 kb on - strand, within PfGW456L13_318at 372.938 kb on - strand, within PfGW456L13_318at 373.012 kb on - strand, within PfGW456L13_318

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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370,036 + +1.1
370,080 + -0.0
370,081 - -3.5
370,081 - -0.5
370,106 + -3.3
370,106 + -0.2
370,106 + -0.9
370,107 - +0.7
370,107 - -0.0
370,153 + +0.2
370,153 + -0.4
370,153 + -1.0
370,153 + +2.1
370,153 + -3.1
370,153 + +0.1
370,153 + +1.0
370,153 + +0.8
370,153 + -3.6
370,153 + +0.9
370,153 + -0.8
370,153 + +0.3
370,153 + +1.4
370,153 + +0.3
370,153 + -0.1
370,154 - -0.4
370,154 - -0.7
370,154 - -0.7
370,154 - -1.3
370,154 - +1.4
370,154 - -2.0
370,154 - -0.7
370,154 - +0.2
370,154 - -3.4
370,154 - +0.8
370,159 + -1.2
370,159 + -3.2
370,159 + +1.6
370,160 - +0.8
370,160 - +1.0
370,160 - +0.0
370,160 - +0.5
370,160 - -0.4
370,160 - -1.0
370,160 - +0.7
370,226 + -0.5
370,226 + +0.3
370,226 + +0.3
370,227 - +0.9
370,227 - -0.6
370,334 + PfGW456L13_316 0.15 -0.2
370,334 + PfGW456L13_316 0.15 -1.8
370,334 + PfGW456L13_316 0.15 +1.0
370,334 + PfGW456L13_316 0.15 -1.3
370,334 + PfGW456L13_316 0.15 +0.9
370,334 + PfGW456L13_316 0.15 -0.7
370,334 + PfGW456L13_316 0.15 +1.8
370,334 + PfGW456L13_316 0.15 -1.4
370,334 + PfGW456L13_316 0.15 +0.2
370,334 + PfGW456L13_316 0.15 +0.6
370,335 - PfGW456L13_316 0.15 +0.6
370,335 - PfGW456L13_316 0.15 -0.6
370,335 - PfGW456L13_316 0.15 +1.4
370,335 - PfGW456L13_316 0.15 +0.6
370,335 - PfGW456L13_316 0.15 +1.2
370,335 - PfGW456L13_316 0.15 +0.0
370,335 - PfGW456L13_316 0.15 +1.0
370,432 + PfGW456L13_316 0.27 +2.0
370,432 + PfGW456L13_316 0.27 +1.1
370,432 + PfGW456L13_316 0.27 -1.0
370,433 - PfGW456L13_316 0.27 +0.8
370,433 - PfGW456L13_316 0.27 -0.3
370,433 - PfGW456L13_316 0.27 +0.6
370,442 + PfGW456L13_316 0.28 +0.1
370,442 + PfGW456L13_316 0.28 +0.5
370,442 + PfGW456L13_316 0.28 -0.6
370,442 + PfGW456L13_316 0.28 -2.6
370,442 + PfGW456L13_316 0.28 +1.0
370,442 + PfGW456L13_316 0.28 +0.5
370,442 + PfGW456L13_316 0.28 +0.9
370,442 + PfGW456L13_316 0.28 -3.4
370,443 - PfGW456L13_316 0.28 +0.6
370,443 - PfGW456L13_316 0.28 -2.6
370,443 - PfGW456L13_316 0.28 -0.8
370,443 - PfGW456L13_316 0.28 +0.6
370,443 - PfGW456L13_316 0.28 +1.5
370,649 + PfGW456L13_316 0.54 +0.1
370,650 - PfGW456L13_316 0.54 +0.7
370,674 - PfGW456L13_316 0.57 +0.5
370,772 + PfGW456L13_316 0.69 +0.8
370,773 - PfGW456L13_316 0.69 +1.8
370,773 - PfGW456L13_316 0.69 +1.0
370,868 + PfGW456L13_316 0.81 +0.9
370,868 + PfGW456L13_316 0.81 +0.5
370,868 + PfGW456L13_316 0.81 +0.6
370,868 + PfGW456L13_316 0.81 +0.6
370,869 - PfGW456L13_316 0.81 +0.5
370,870 + PfGW456L13_316 0.81 -2.9
370,870 + PfGW456L13_316 0.81 +1.1
370,870 + PfGW456L13_316 0.81 +1.8
370,871 - PfGW456L13_316 0.81 -2.7
370,871 - PfGW456L13_316 0.81 +1.4
370,871 - PfGW456L13_316 0.81 -0.7
371,014 - +0.6
371,031 + +0.7
371,031 + +1.3
371,032 - +0.9
371,032 - -1.0
371,092 - +1.1
371,092 - -0.9
371,380 - PfGW456L13_317 0.29 -0.3
371,563 + PfGW456L13_317 0.44 -1.3
371,563 + PfGW456L13_317 0.44 +1.4
371,604 + PfGW456L13_317 0.48 +0.6
371,683 + PfGW456L13_317 0.54 +0.6
371,683 + PfGW456L13_317 0.54 -0.2
371,683 + PfGW456L13_317 0.54 +1.1
371,684 - PfGW456L13_317 0.54 -0.4
371,684 - PfGW456L13_317 0.54 -0.1
371,685 + PfGW456L13_317 0.54 -1.3
371,685 + PfGW456L13_317 0.54 +0.1
371,685 + PfGW456L13_317 0.54 -0.9
371,686 - PfGW456L13_317 0.54 -1.5
371,686 - PfGW456L13_317 0.54 +1.8
371,686 - PfGW456L13_317 0.54 +1.2
371,686 - PfGW456L13_317 0.54 +1.5
371,686 - PfGW456L13_317 0.54 -2.3
371,686 - PfGW456L13_317 0.54 +2.0
371,686 - PfGW456L13_317 0.54 -0.5
371,686 - PfGW456L13_317 0.54 -2.4
371,686 - PfGW456L13_317 0.54 -1.3
371,707 - PfGW456L13_317 0.56 +0.2
371,707 - PfGW456L13_317 0.56 -2.6
371,707 - PfGW456L13_317 0.56 -4.0
372,249 + -1.2
372,249 + -0.2
372,249 + -0.2
372,249 + +1.8
372,249 + +0.9
372,249 + -3.4
372,250 - -1.5
372,250 - -1.0
372,250 - -2.0
372,250 - +1.2
372,250 - -0.2
372,250 - +1.3
372,250 - +0.9
372,326 + +1.0
372,326 + +0.2
372,392 + -4.1
372,447 - PfGW456L13_318 0.14 +1.0
372,605 + PfGW456L13_318 0.25 +1.0
372,605 + PfGW456L13_318 0.25 -0.5
372,606 - PfGW456L13_318 0.25 -0.4
372,606 - PfGW456L13_318 0.25 +0.6
372,606 - PfGW456L13_318 0.25 +1.4
372,606 - PfGW456L13_318 0.25 +1.7
372,914 + PfGW456L13_318 0.47 +0.1
372,914 + PfGW456L13_318 0.47 +0.6
372,914 + PfGW456L13_318 0.47 -0.4
372,914 + PfGW456L13_318 0.47 +0.2
372,914 + PfGW456L13_318 0.47 +2.5
372,914 + PfGW456L13_318 0.47 +0.3
372,915 - PfGW456L13_318 0.47 +1.0
372,915 - PfGW456L13_318 0.47 +0.5
372,915 - PfGW456L13_318 0.47 -3.0
372,938 - PfGW456L13_318 0.49 -1.3
373,012 - PfGW456L13_318 0.54 +0.4

Or see this region's nucleotide sequence