Experiment: Shikimic Acid carbon 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00622 and PFR28_00623 are separated by 36 nucleotides PFR28_00623 and PFR28_00624 are separated by 1 nucleotides PFR28_00624 and PFR28_00625 are separated by 205 nucleotides
PFR28_00622: PFR28_00622 - Beta-ketoadipyl-CoA thiolase, at 662,929 to 664,131
_00622
PFR28_00623: PFR28_00623 - Protocatechuate 3,4-dioxygenase beta chain, at 664,168 to 664,872
_00623
PFR28_00624: PFR28_00624 - Protocatechuate 3,4-dioxygenase alpha chain, at 664,874 to 665,440
_00624
PFR28_00625: PFR28_00625 - Alpha-ketoglutarate permease, at 665,646 to 666,941
_00625
Position (kb) 664
665
666 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 664.026 kb on - strand at 664.132 kb on + strand at 664.132 kb on + strand at 664.132 kb on + strand at 664.133 kb on - strand at 664.133 kb on - strand at 664.133 kb on - strand at 664.133 kb on - strand at 664.141 kb on + strand at 664.141 kb on + strand at 664.141 kb on + strand at 664.142 kb on - strand at 664.148 kb on - strand at 664.219 kb on + strand at 664.568 kb on - strand, within PFR28_00623 at 664.597 kb on + strand, within PFR28_00623 at 664.598 kb on - strand, within PFR28_00623 at 664.693 kb on + strand, within PFR28_00623 at 664.694 kb on - strand, within PFR28_00623 at 664.694 kb on - strand, within PFR28_00623 at 664.720 kb on + strand, within PFR28_00623 at 664.732 kb on + strand, within PFR28_00623 at 664.732 kb on + strand, within PFR28_00623 at 664.732 kb on + strand, within PFR28_00623 at 664.732 kb on + strand, within PFR28_00623 at 664.733 kb on - strand, within PFR28_00623 at 664.733 kb on - strand, within PFR28_00623 at 664.733 kb on - strand, within PFR28_00623 at 664.808 kb on - strand at 664.835 kb on + strand at 664.835 kb on + strand at 664.835 kb on + strand at 664.836 kb on - strand at 664.836 kb on - strand at 664.836 kb on - strand at 664.870 kb on + strand at 664.870 kb on + strand at 664.871 kb on - strand at 664.871 kb on - strand at 664.871 kb on - strand at 664.871 kb on - strand at 664.871 kb on - strand at 664.871 kb on - strand at 664.889 kb on - strand at 664.889 kb on - strand at 664.891 kb on + strand at 664.891 kb on + strand at 664.891 kb on + strand at 664.891 kb on + strand at 664.891 kb on + strand at 664.891 kb on + strand at 664.891 kb on + strand at 664.891 kb on + strand at 664.891 kb on + strand at 664.891 kb on + strand at 664.892 kb on - strand at 664.892 kb on - strand at 664.892 kb on - strand at 664.892 kb on - strand at 664.892 kb on - strand at 664.892 kb on - strand at 664.892 kb on - strand at 664.892 kb on - strand at 664.892 kb on - strand at 664.892 kb on - strand at 664.892 kb on - strand at 664.892 kb on - strand at 664.913 kb on + strand at 664.914 kb on - strand at 664.914 kb on - strand at 664.914 kb on - strand at 664.914 kb on - strand at 664.914 kb on - strand at 664.914 kb on - strand at 664.916 kb on + strand at 664.916 kb on + strand at 664.916 kb on + strand at 664.916 kb on + strand at 664.916 kb on + strand at 664.917 kb on - strand at 664.917 kb on - strand at 664.917 kb on - strand at 664.917 kb on - strand at 664.917 kb on - strand at 664.917 kb on - strand at 665.072 kb on + strand, within PFR28_00624 at 665.072 kb on + strand, within PFR28_00624 at 665.072 kb on + strand, within PFR28_00624 at 665.073 kb on - strand, within PFR28_00624 at 665.073 kb on - strand, within PFR28_00624 at 665.190 kb on + strand, within PFR28_00624 at 665.279 kb on + strand, within PFR28_00624 at 665.279 kb on + strand, within PFR28_00624 at 665.279 kb on + strand, within PFR28_00624 at 665.280 kb on - strand, within PFR28_00624 at 665.280 kb on - strand, within PFR28_00624 at 665.280 kb on - strand, within PFR28_00624 at 665.381 kb on + strand, within PFR28_00624 at 665.667 kb on + strand at 665.684 kb on + strand at 665.685 kb on - strand at 665.685 kb on - strand at 665.685 kb on - strand at 665.748 kb on + strand at 665.748 kb on + strand at 665.748 kb on + strand at 665.748 kb on + strand at 665.749 kb on - strand at 665.749 kb on - strand at 665.749 kb on - strand at 665.749 kb on - strand at 665.749 kb on - strand at 665.749 kb on - strand at 665.749 kb on - strand at 665.749 kb on - strand at 665.749 kb on - strand at 665.754 kb on + strand at 665.754 kb on + strand at 665.754 kb on + strand at 665.754 kb on + strand at 665.754 kb on + strand at 665.755 kb on - strand at 665.755 kb on - strand at 665.755 kb on - strand at 665.773 kb on - strand at 665.773 kb on - strand at 665.773 kb on - strand at 665.773 kb on - strand at 665.807 kb on + strand, within PFR28_00625 at 665.807 kb on + strand, within PFR28_00625 at 665.807 kb on + strand, within PFR28_00625 at 665.808 kb on - strand, within PFR28_00625 at 665.808 kb on - strand, within PFR28_00625 at 665.808 kb on - strand, within PFR28_00625 at 665.812 kb on + strand, within PFR28_00625 at 665.812 kb on + strand, within PFR28_00625 at 665.812 kb on + strand, within PFR28_00625 at 665.813 kb on - strand, within PFR28_00625 at 665.979 kb on + strand, within PFR28_00625 at 665.979 kb on + strand, within PFR28_00625 at 665.979 kb on + strand, within PFR28_00625 at 665.979 kb on + strand, within PFR28_00625 at 665.979 kb on + strand, within PFR28_00625 at 665.979 kb on + strand, within PFR28_00625 at 665.979 kb on + strand, within PFR28_00625 at 665.980 kb on - strand, within PFR28_00625 at 665.980 kb on - strand, within PFR28_00625 at 666.072 kb on - strand, within PFR28_00625 at 666.072 kb on - strand, within PFR28_00625 at 666.072 kb on - strand, within PFR28_00625 at 666.075 kb on + strand, within PFR28_00625 at 666.075 kb on + strand, within PFR28_00625 at 666.075 kb on + strand, within PFR28_00625 at 666.075 kb on + strand, within PFR28_00625 at 666.075 kb on + strand, within PFR28_00625 at 666.075 kb on + strand, within PFR28_00625 at 666.075 kb on + strand, within PFR28_00625 at 666.076 kb on - strand, within PFR28_00625 at 666.076 kb on - strand, within PFR28_00625 at 666.076 kb on - strand, within PFR28_00625 at 666.076 kb on - strand, within PFR28_00625 at 666.076 kb on - strand, within PFR28_00625 at 666.076 kb on - strand, within PFR28_00625 at 666.076 kb on - strand, within PFR28_00625 at 666.076 kb on - strand, within PFR28_00625 at 666.076 kb on - strand, within PFR28_00625 at 666.076 kb on - strand, within PFR28_00625 at 666.076 kb on - strand, within PFR28_00625 at 666.129 kb on + strand, within PFR28_00625 at 666.129 kb on + strand, within PFR28_00625 at 666.129 kb on + strand, within PFR28_00625 at 666.129 kb on + strand, within PFR28_00625 at 666.129 kb on + strand, within PFR28_00625 at 666.129 kb on + strand, within PFR28_00625 at 666.129 kb on + strand, within PFR28_00625 at 666.130 kb on - strand, within PFR28_00625 at 666.130 kb on - strand, within PFR28_00625 at 666.130 kb on - strand, within PFR28_00625 at 666.130 kb on - strand, within PFR28_00625 at 666.130 kb on - strand, within PFR28_00625 at 666.387 kb on + strand, within PFR28_00625 at 666.387 kb on + strand, within PFR28_00625 at 666.414 kb on + strand, within PFR28_00625 at 666.414 kb on + strand, within PFR28_00625 at 666.415 kb on - strand, within PFR28_00625 at 666.429 kb on + strand, within PFR28_00625 at 666.429 kb on + strand, within PFR28_00625 at 666.429 kb on + strand, within PFR28_00625 at 666.429 kb on + strand, within PFR28_00625 at 666.429 kb on + strand, within PFR28_00625 at 666.429 kb on + strand, within PFR28_00625 at 666.429 kb on + strand, within PFR28_00625 at 666.429 kb on + strand, within PFR28_00625 at 666.429 kb on + strand, within PFR28_00625 at 666.429 kb on + strand, within PFR28_00625 at 666.429 kb on + strand, within PFR28_00625 at 666.429 kb on + strand, within PFR28_00625 at 666.430 kb on - strand, within PFR28_00625 at 666.430 kb on - strand, within PFR28_00625 at 666.430 kb on - strand, within PFR28_00625 at 666.430 kb on - strand, within PFR28_00625 at 666.430 kb on - strand, within PFR28_00625 at 666.430 kb on - strand, within PFR28_00625 at 666.430 kb on - strand, within PFR28_00625 at 666.430 kb on - strand, within PFR28_00625 at 666.430 kb on - strand, within PFR28_00625 at 666.430 kb on - strand, within PFR28_00625 at 666.430 kb on - strand, within PFR28_00625 at 666.430 kb on - strand, within PFR28_00625 at 666.430 kb on - strand, within PFR28_00625 at 666.430 kb on - strand, within PFR28_00625 at 666.430 kb on - strand, within PFR28_00625 at 666.430 kb on - strand, within PFR28_00625 at 666.430 kb on - strand, within PFR28_00625 at 666.430 kb on - strand, within PFR28_00625 at 666.430 kb on - strand, within PFR28_00625 at 666.430 kb on - strand, within PFR28_00625
Per-strain Table
Position Strand Gene LocusTag Fraction Shikimic Acid carbon 10 mM remove 664,026 - -3.9 664,132 + +0.2 664,132 + +0.1 664,132 + -0.4 664,133 - -2.8 664,133 - -2.3 664,133 - -2.5 664,133 - -4.5 664,141 + -2.6 664,141 + -1.4 664,141 + -1.1 664,142 - -2.3 664,148 - -3.0 664,219 + -2.5 664,568 - PFR28_00623 0.57 -4.2 664,597 + PFR28_00623 0.61 -3.6 664,598 - PFR28_00623 0.61 -1.1 664,693 + PFR28_00623 0.74 -4.1 664,694 - PFR28_00623 0.75 -3.0 664,694 - PFR28_00623 0.75 -2.7 664,720 + PFR28_00623 0.78 -1.7 664,732 + PFR28_00623 0.80 -3.2 664,732 + PFR28_00623 0.80 -3.7 664,732 + PFR28_00623 0.80 -4.8 664,732 + PFR28_00623 0.80 -4.3 664,733 - PFR28_00623 0.80 -3.9 664,733 - PFR28_00623 0.80 -3.6 664,733 - PFR28_00623 0.80 -2.6 664,808 - -4.7 664,835 + -3.2 664,835 + -4.7 664,835 + -4.0 664,836 - -2.8 664,836 - -3.0 664,836 - -2.2 664,870 + -2.6 664,870 + -2.8 664,871 - -2.7 664,871 - -3.7 664,871 - -1.1 664,871 - -2.8 664,871 - -3.8 664,871 - -4.2 664,889 - -2.8 664,889 - -3.1 664,891 + -3.0 664,891 + -3.4 664,891 + -3.3 664,891 + -2.3 664,891 + -3.2 664,891 + -3.2 664,891 + -1.1 664,891 + -3.3 664,891 + -2.1 664,891 + -2.7 664,892 - -1.1 664,892 - -5.0 664,892 - -3.6 664,892 - -4.9 664,892 - -3.2 664,892 - -4.1 664,892 - -3.9 664,892 - -5.0 664,892 - -0.8 664,892 - -4.2 664,892 - -1.5 664,892 - -3.6 664,913 + -2.3 664,914 - -4.0 664,914 - -3.6 664,914 - -2.1 664,914 - -4.0 664,914 - -2.4 664,914 - -1.3 664,916 + -2.6 664,916 + -3.6 664,916 + -4.7 664,916 + -4.7 664,916 + -4.0 664,917 - -2.4 664,917 - -3.2 664,917 - -1.7 664,917 - -3.2 664,917 - -3.3 664,917 - -4.0 665,072 + PFR28_00624 0.35 -4.4 665,072 + PFR28_00624 0.35 -4.1 665,072 + PFR28_00624 0.35 -4.2 665,073 - PFR28_00624 0.35 -4.3 665,073 - PFR28_00624 0.35 -4.2 665,190 + PFR28_00624 0.56 -2.8 665,279 + PFR28_00624 0.71 -4.1 665,279 + PFR28_00624 0.71 -2.8 665,279 + PFR28_00624 0.71 -3.5 665,280 - PFR28_00624 0.72 -4.1 665,280 - PFR28_00624 0.72 -3.0 665,280 - PFR28_00624 0.72 -1.7 665,381 + PFR28_00624 0.89 -3.0 665,667 + -3.4 665,684 + -2.0 665,685 - -2.4 665,685 - -2.8 665,685 - -4.3 665,748 + -3.7 665,748 + -3.3 665,748 + -2.1 665,748 + -0.8 665,749 - -4.6 665,749 - -2.9 665,749 - -1.8 665,749 - -3.0 665,749 - -4.3 665,749 - -1.7 665,749 - -2.7 665,749 - -2.0 665,749 - -4.0 665,754 + -1.8 665,754 + -1.7 665,754 + -3.7 665,754 + -2.2 665,754 + -2.9 665,755 - -4.0 665,755 - -3.3 665,755 - -3.4 665,773 - -4.5 665,773 - -3.8 665,773 - -4.2 665,773 - -3.8 665,807 + PFR28_00625 0.12 -1.2 665,807 + PFR28_00625 0.12 -1.9 665,807 + PFR28_00625 0.12 -4.2 665,808 - PFR28_00625 0.12 -2.6 665,808 - PFR28_00625 0.12 -2.7 665,808 - PFR28_00625 0.12 -4.0 665,812 + PFR28_00625 0.13 -1.5 665,812 + PFR28_00625 0.13 -1.6 665,812 + PFR28_00625 0.13 +1.5 665,813 - PFR28_00625 0.13 -3.3 665,979 + PFR28_00625 0.26 +0.4 665,979 + PFR28_00625 0.26 -4.0 665,979 + PFR28_00625 0.26 -1.7 665,979 + PFR28_00625 0.26 -4.2 665,979 + PFR28_00625 0.26 -0.8 665,979 + PFR28_00625 0.26 -3.9 665,979 + PFR28_00625 0.26 -2.0 665,980 - PFR28_00625 0.26 -4.1 665,980 - PFR28_00625 0.26 -3.6 666,072 - PFR28_00625 0.33 -3.4 666,072 - PFR28_00625 0.33 -2.8 666,072 - PFR28_00625 0.33 -3.9 666,075 + PFR28_00625 0.33 -2.7 666,075 + PFR28_00625 0.33 +1.1 666,075 + PFR28_00625 0.33 -1.5 666,075 + PFR28_00625 0.33 -2.8 666,075 + PFR28_00625 0.33 -0.5 666,075 + PFR28_00625 0.33 -3.9 666,075 + PFR28_00625 0.33 -4.1 666,076 - PFR28_00625 0.33 -2.4 666,076 - PFR28_00625 0.33 -4.7 666,076 - PFR28_00625 0.33 -3.6 666,076 - PFR28_00625 0.33 -2.8 666,076 - PFR28_00625 0.33 -3.9 666,076 - PFR28_00625 0.33 -3.1 666,076 - PFR28_00625 0.33 -1.3 666,076 - PFR28_00625 0.33 -4.4 666,076 - PFR28_00625 0.33 -3.1 666,076 - PFR28_00625 0.33 -3.6 666,076 - PFR28_00625 0.33 -4.0 666,129 + PFR28_00625 0.37 -1.8 666,129 + PFR28_00625 0.37 -2.0 666,129 + PFR28_00625 0.37 -1.9 666,129 + PFR28_00625 0.37 -0.1 666,129 + PFR28_00625 0.37 -0.8 666,129 + PFR28_00625 0.37 -1.1 666,129 + PFR28_00625 0.37 -2.0 666,130 - PFR28_00625 0.37 -3.6 666,130 - PFR28_00625 0.37 -3.6 666,130 - PFR28_00625 0.37 -2.7 666,130 - PFR28_00625 0.37 -3.3 666,130 - PFR28_00625 0.37 -3.5 666,387 + PFR28_00625 0.57 -2.3 666,387 + PFR28_00625 0.57 -1.2 666,414 + PFR28_00625 0.59 -1.8 666,414 + PFR28_00625 0.59 +0.4 666,415 - PFR28_00625 0.59 -2.9 666,429 + PFR28_00625 0.60 +0.3 666,429 + PFR28_00625 0.60 +0.2 666,429 + PFR28_00625 0.60 -1.2 666,429 + PFR28_00625 0.60 -0.9 666,429 + PFR28_00625 0.60 -1.8 666,429 + PFR28_00625 0.60 -0.6 666,429 + PFR28_00625 0.60 -0.2 666,429 + PFR28_00625 0.60 +0.1 666,429 + PFR28_00625 0.60 +0.2 666,429 + PFR28_00625 0.60 -0.1 666,429 + PFR28_00625 0.60 -0.3 666,429 + PFR28_00625 0.60 +0.8 666,430 - PFR28_00625 0.60 -3.1 666,430 - PFR28_00625 0.60 -4.2 666,430 - PFR28_00625 0.60 -3.3 666,430 - PFR28_00625 0.60 -1.0 666,430 - PFR28_00625 0.60 -2.1 666,430 - PFR28_00625 0.60 -1.1 666,430 - PFR28_00625 0.60 -4.1 666,430 - PFR28_00625 0.60 -3.7 666,430 - PFR28_00625 0.60 -4.1 666,430 - PFR28_00625 0.60 -4.5 666,430 - PFR28_00625 0.60 -2.6 666,430 - PFR28_00625 0.60 -4.7 666,430 - PFR28_00625 0.60 +1.5 666,430 - PFR28_00625 0.60 -2.4 666,430 - PFR28_00625 0.60 -4.0 666,430 - PFR28_00625 0.60 -2.5 666,430 - PFR28_00625 0.60 -3.2 666,430 - PFR28_00625 0.60 -4.5 666,430 - PFR28_00625 0.60 -3.7 666,430 - PFR28_00625 0.60 -2.6
Or see this region's nucleotide sequence