Strain Fitness in Pseudomonas sp. S08-1 around OH686_13525

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_13515 and OH686_13520 overlap by 4 nucleotidesOH686_13520 and OH686_13525 are separated by 3 nucleotidesOH686_13525 and OH686_13530 are separated by 224 nucleotides OH686_13515: OH686_13515 - hypothetical protein, at 2,839,028 to 2,839,741 _13515 OH686_13520: OH686_13520 - TonB system transport protein ExbD, at 2,839,738 to 2,840,163 _13520 OH686_13525: OH686_13525 - tonB-system energizer ExbB, at 2,840,167 to 2,841,213 _13525 OH686_13530: OH686_13530 - Nucleoside-diphosphate-sugar , at 2,841,438 to 2,842,307 _13530 Position (kb) 2840 2841 2842Strain fitness (log2 ratio) -2 -1 0 1at 2839.829 kb on + strand, within OH686_13520at 2841.256 kb on - strandat 2841.332 kb on + strandat 2841.345 kb on - strandat 2841.365 kb on - strandat 2841.427 kb on + strandat 2841.427 kb on + strandat 2841.427 kb on + strandat 2841.427 kb on + strandat 2841.428 kb on - strandat 2841.433 kb on + strandat 2841.433 kb on + strandat 2841.433 kb on + strandat 2841.433 kb on + strandat 2841.433 kb on + strandat 2841.433 kb on + strandat 2841.433 kb on + strandat 2841.433 kb on + strandat 2841.433 kb on + strandat 2841.433 kb on + strandat 2841.434 kb on - strandat 2841.434 kb on - strandat 2841.434 kb on - strandat 2841.434 kb on - strandat 2841.434 kb on - strandat 2841.522 kb on + strandat 2841.523 kb on - strandat 2841.630 kb on + strand, within OH686_13530at 2841.630 kb on + strand, within OH686_13530at 2841.630 kb on + strand, within OH686_13530at 2841.631 kb on - strand, within OH686_13530at 2841.631 kb on - strand, within OH686_13530at 2841.639 kb on + strand, within OH686_13530at 2841.639 kb on + strand, within OH686_13530at 2841.640 kb on - strand, within OH686_13530at 2841.640 kb on - strand, within OH686_13530at 2841.640 kb on - strand, within OH686_13530at 2841.640 kb on - strand, within OH686_13530at 2841.640 kb on - strand, within OH686_13530at 2841.640 kb on - strand, within OH686_13530at 2841.640 kb on - strand, within OH686_13530at 2841.640 kb on - strand, within OH686_13530at 2841.640 kb on - strand, within OH686_13530at 2841.640 kb on - strand, within OH686_13530at 2841.640 kb on - strand, within OH686_13530at 2841.687 kb on + strand, within OH686_13530at 2841.687 kb on + strand, within OH686_13530at 2841.687 kb on + strand, within OH686_13530at 2841.687 kb on + strand, within OH686_13530at 2841.687 kb on + strand, within OH686_13530at 2841.687 kb on + strand, within OH686_13530at 2841.687 kb on + strand, within OH686_13530at 2841.688 kb on - strand, within OH686_13530at 2841.688 kb on - strand, within OH686_13530at 2841.688 kb on - strand, within OH686_13530at 2841.688 kb on - strand, within OH686_13530at 2841.688 kb on - strand, within OH686_13530at 2841.688 kb on - strand, within OH686_13530at 2841.688 kb on - strand, within OH686_13530at 2841.688 kb on - strand, within OH686_13530at 2841.700 kb on + strand, within OH686_13530at 2841.700 kb on + strand, within OH686_13530at 2841.701 kb on - strand, within OH686_13530at 2841.777 kb on + strand, within OH686_13530at 2841.777 kb on + strand, within OH686_13530at 2841.777 kb on + strand, within OH686_13530at 2841.777 kb on + strand, within OH686_13530at 2841.777 kb on + strand, within OH686_13530at 2841.777 kb on + strand, within OH686_13530at 2841.777 kb on + strand, within OH686_13530at 2841.777 kb on + strand, within OH686_13530at 2841.777 kb on + strand, within OH686_13530at 2841.777 kb on + strand, within OH686_13530at 2841.777 kb on + strand, within OH686_13530at 2841.777 kb on + strand, within OH686_13530at 2841.777 kb on + strand, within OH686_13530at 2841.777 kb on + strand, within OH686_13530at 2841.777 kb on + strand, within OH686_13530at 2841.777 kb on + strand, within OH686_13530at 2841.777 kb on + strand, within OH686_13530at 2841.778 kb on - strand, within OH686_13530at 2841.778 kb on - strand, within OH686_13530at 2841.778 kb on - strand, within OH686_13530at 2841.778 kb on - strand, within OH686_13530at 2841.778 kb on - strand, within OH686_13530at 2841.778 kb on - strand, within OH686_13530at 2841.778 kb on - strand, within OH686_13530at 2841.778 kb on - strand, within OH686_13530at 2841.778 kb on - strand, within OH686_13530at 2841.778 kb on - strand, within OH686_13530at 2841.778 kb on - strand, within OH686_13530at 2841.778 kb on - strand, within OH686_13530at 2841.778 kb on - strand, within OH686_13530at 2841.778 kb on - strand, within OH686_13530at 2841.834 kb on + strand, within OH686_13530at 2841.834 kb on + strand, within OH686_13530at 2841.835 kb on - strand, within OH686_13530at 2841.835 kb on - strand, within OH686_13530at 2841.918 kb on + strand, within OH686_13530at 2841.918 kb on + strand, within OH686_13530at 2841.918 kb on + strand, within OH686_13530at 2841.918 kb on + strand, within OH686_13530at 2841.918 kb on + strand, within OH686_13530at 2841.918 kb on + strand, within OH686_13530at 2841.918 kb on + strand, within OH686_13530at 2841.918 kb on + strand, within OH686_13530at 2841.918 kb on + strand, within OH686_13530at 2841.918 kb on + strand, within OH686_13530at 2841.919 kb on - strand, within OH686_13530at 2841.919 kb on - strand, within OH686_13530at 2841.919 kb on - strand, within OH686_13530at 2841.919 kb on - strand, within OH686_13530at 2841.919 kb on - strand, within OH686_13530at 2841.919 kb on - strand, within OH686_13530at 2841.990 kb on + strand, within OH686_13530at 2841.990 kb on + strand, within OH686_13530at 2841.991 kb on - strand, within OH686_13530at 2841.991 kb on - strand, within OH686_13530at 2841.991 kb on - strand, within OH686_13530at 2841.991 kb on - strand, within OH686_13530at 2842.080 kb on + strand, within OH686_13530at 2842.080 kb on + strand, within OH686_13530at 2842.081 kb on - strand, within OH686_13530at 2842.081 kb on - strand, within OH686_13530at 2842.081 kb on - strand, within OH686_13530

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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2,839,829 + OH686_13520 0.21 -0.3
2,841,256 - -0.9
2,841,332 + -2.0
2,841,345 - -0.9
2,841,365 - +0.2
2,841,427 + -0.4
2,841,427 + -0.3
2,841,427 + -1.0
2,841,427 + -1.3
2,841,428 - -1.2
2,841,433 + +0.4
2,841,433 + -0.4
2,841,433 + +1.0
2,841,433 + +0.2
2,841,433 + -1.0
2,841,433 + +0.7
2,841,433 + +0.1
2,841,433 + -0.5
2,841,433 + +0.4
2,841,433 + +0.3
2,841,434 - -1.0
2,841,434 - -0.3
2,841,434 - +0.5
2,841,434 - +0.7
2,841,434 - -0.1
2,841,522 + +0.6
2,841,523 - +0.9
2,841,630 + OH686_13530 0.22 -0.1
2,841,630 + OH686_13530 0.22 -0.6
2,841,630 + OH686_13530 0.22 +0.4
2,841,631 - OH686_13530 0.22 +0.9
2,841,631 - OH686_13530 0.22 +0.3
2,841,639 + OH686_13530 0.23 -1.0
2,841,639 + OH686_13530 0.23 -0.6
2,841,640 - OH686_13530 0.23 +0.6
2,841,640 - OH686_13530 0.23 -0.6
2,841,640 - OH686_13530 0.23 -0.2
2,841,640 - OH686_13530 0.23 +0.2
2,841,640 - OH686_13530 0.23 +0.1
2,841,640 - OH686_13530 0.23 -0.6
2,841,640 - OH686_13530 0.23 -1.3
2,841,640 - OH686_13530 0.23 -0.3
2,841,640 - OH686_13530 0.23 -0.5
2,841,640 - OH686_13530 0.23 +0.4
2,841,640 - OH686_13530 0.23 +0.6
2,841,687 + OH686_13530 0.29 -0.3
2,841,687 + OH686_13530 0.29 +1.2
2,841,687 + OH686_13530 0.29 +0.9
2,841,687 + OH686_13530 0.29 -0.0
2,841,687 + OH686_13530 0.29 -0.3
2,841,687 + OH686_13530 0.29 +0.5
2,841,687 + OH686_13530 0.29 -0.8
2,841,688 - OH686_13530 0.29 -0.1
2,841,688 - OH686_13530 0.29 -0.2
2,841,688 - OH686_13530 0.29 +0.1
2,841,688 - OH686_13530 0.29 +1.0
2,841,688 - OH686_13530 0.29 -1.5
2,841,688 - OH686_13530 0.29 +1.1
2,841,688 - OH686_13530 0.29 +0.1
2,841,688 - OH686_13530 0.29 +0.2
2,841,700 + OH686_13530 0.30 -0.3
2,841,700 + OH686_13530 0.30 +0.4
2,841,701 - OH686_13530 0.30 -0.2
2,841,777 + OH686_13530 0.39 +0.4
2,841,777 + OH686_13530 0.39 -0.3
2,841,777 + OH686_13530 0.39 +0.1
2,841,777 + OH686_13530 0.39 +0.4
2,841,777 + OH686_13530 0.39 -0.3
2,841,777 + OH686_13530 0.39 -0.7
2,841,777 + OH686_13530 0.39 -0.3
2,841,777 + OH686_13530 0.39 +0.4
2,841,777 + OH686_13530 0.39 +0.8
2,841,777 + OH686_13530 0.39 +0.7
2,841,777 + OH686_13530 0.39 +0.1
2,841,777 + OH686_13530 0.39 -1.0
2,841,777 + OH686_13530 0.39 +0.0
2,841,777 + OH686_13530 0.39 -1.3
2,841,777 + OH686_13530 0.39 +0.6
2,841,777 + OH686_13530 0.39 +1.1
2,841,777 + OH686_13530 0.39 +0.6
2,841,778 - OH686_13530 0.39 +0.7
2,841,778 - OH686_13530 0.39 -0.3
2,841,778 - OH686_13530 0.39 +0.7
2,841,778 - OH686_13530 0.39 -1.1
2,841,778 - OH686_13530 0.39 +0.3
2,841,778 - OH686_13530 0.39 -0.0
2,841,778 - OH686_13530 0.39 -0.8
2,841,778 - OH686_13530 0.39 -0.0
2,841,778 - OH686_13530 0.39 +0.8
2,841,778 - OH686_13530 0.39 -1.1
2,841,778 - OH686_13530 0.39 -1.5
2,841,778 - OH686_13530 0.39 +0.1
2,841,778 - OH686_13530 0.39 -0.1
2,841,778 - OH686_13530 0.39 -0.6
2,841,834 + OH686_13530 0.46 -0.2
2,841,834 + OH686_13530 0.46 -0.9
2,841,835 - OH686_13530 0.46 +0.5
2,841,835 - OH686_13530 0.46 -0.1
2,841,918 + OH686_13530 0.55 +0.4
2,841,918 + OH686_13530 0.55 +0.5
2,841,918 + OH686_13530 0.55 -0.2
2,841,918 + OH686_13530 0.55 -0.8
2,841,918 + OH686_13530 0.55 -0.6
2,841,918 + OH686_13530 0.55 +0.1
2,841,918 + OH686_13530 0.55 +0.0
2,841,918 + OH686_13530 0.55 -0.3
2,841,918 + OH686_13530 0.55 +0.4
2,841,918 + OH686_13530 0.55 -0.9
2,841,919 - OH686_13530 0.55 +0.1
2,841,919 - OH686_13530 0.55 -0.2
2,841,919 - OH686_13530 0.55 +0.4
2,841,919 - OH686_13530 0.55 -1.2
2,841,919 - OH686_13530 0.55 -1.0
2,841,919 - OH686_13530 0.55 +0.6
2,841,990 + OH686_13530 0.63 +0.3
2,841,990 + OH686_13530 0.63 -0.1
2,841,991 - OH686_13530 0.64 -0.2
2,841,991 - OH686_13530 0.64 +0.0
2,841,991 - OH686_13530 0.64 -0.3
2,841,991 - OH686_13530 0.64 +0.3
2,842,080 + OH686_13530 0.74 -0.5
2,842,080 + OH686_13530 0.74 -0.3
2,842,081 - OH686_13530 0.74 +0.7
2,842,081 - OH686_13530 0.74 -0.2
2,842,081 - OH686_13530 0.74 +0.6

Or see this region's nucleotide sequence