Strain Fitness in Pseudomonas sp. S08-1 around OH686_01110

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_01105 and OH686_01110 overlap by 1 nucleotidesOH686_01110 and OH686_01115 overlap by 4 nucleotidesOH686_01115 and OH686_01120 are separated by 2 nucleotidesOH686_01120 and OH686_01125 are separated by 132 nucleotides OH686_01105: OH686_01105 - putative baseplate assembly protein, at 249,633 to 252,419 _01105 OH686_01110: OH686_01110 - putative baseplate assembly protein, at 252,419 to 254,989 _01110 OH686_01115: OH686_01115 - hypothetical protein, at 254,986 to 255,354 _01115 OH686_01120: OH686_01120 - hypothetical protein, at 255,357 to 255,677 _01120 OH686_01125: OH686_01125 - Protein previously called VgrG, at 255,810 to 256,322 _01125 Position (kb) 252 253 254 255Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 251.520 kb on - strand, within OH686_01105at 251.520 kb on - strand, within OH686_01105at 251.606 kb on + strand, within OH686_01105at 251.607 kb on - strand, within OH686_01105at 252.139 kb on + strand, within OH686_01105at 252.139 kb on + strand, within OH686_01105at 252.139 kb on + strand, within OH686_01105at 252.154 kb on + strandat 252.166 kb on + strandat 252.166 kb on + strandat 252.166 kb on + strandat 252.166 kb on + strandat 252.167 kb on - strandat 252.167 kb on - strandat 252.575 kb on + strandat 252.612 kb on + strandat 252.613 kb on - strandat 252.741 kb on + strand, within OH686_01110at 252.758 kb on + strand, within OH686_01110at 252.806 kb on + strand, within OH686_01110at 252.806 kb on + strand, within OH686_01110at 252.806 kb on + strand, within OH686_01110at 252.806 kb on + strand, within OH686_01110at 252.806 kb on + strand, within OH686_01110at 252.806 kb on + strand, within OH686_01110at 252.806 kb on + strand, within OH686_01110at 252.807 kb on - strand, within OH686_01110at 252.807 kb on - strand, within OH686_01110at 252.807 kb on - strand, within OH686_01110at 252.807 kb on - strand, within OH686_01110at 252.807 kb on - strand, within OH686_01110at 252.807 kb on - strand, within OH686_01110at 252.987 kb on + strand, within OH686_01110at 252.987 kb on + strand, within OH686_01110at 252.988 kb on - strand, within OH686_01110at 252.988 kb on - strand, within OH686_01110at 253.186 kb on - strand, within OH686_01110at 253.186 kb on - strand, within OH686_01110at 253.188 kb on + strand, within OH686_01110at 253.188 kb on + strand, within OH686_01110at 253.188 kb on + strand, within OH686_01110at 253.189 kb on - strand, within OH686_01110at 253.189 kb on - strand, within OH686_01110at 253.189 kb on - strand, within OH686_01110at 253.189 kb on - strand, within OH686_01110at 253.481 kb on + strand, within OH686_01110at 253.482 kb on - strand, within OH686_01110at 253.482 kb on - strand, within OH686_01110at 254.011 kb on + strand, within OH686_01110at 254.011 kb on + strand, within OH686_01110at 254.012 kb on - strand, within OH686_01110at 254.151 kb on + strand, within OH686_01110at 254.151 kb on + strand, within OH686_01110at 254.152 kb on - strand, within OH686_01110at 254.152 kb on - strand, within OH686_01110at 254.241 kb on + strand, within OH686_01110at 254.241 kb on + strand, within OH686_01110at 254.242 kb on - strand, within OH686_01110at 254.242 kb on - strand, within OH686_01110at 254.298 kb on + strand, within OH686_01110at 254.298 kb on + strand, within OH686_01110at 254.299 kb on - strand, within OH686_01110at 254.299 kb on - strand, within OH686_01110at 254.299 kb on - strand, within OH686_01110at 254.328 kb on + strand, within OH686_01110at 254.329 kb on - strand, within OH686_01110at 254.329 kb on - strand, within OH686_01110at 254.329 kb on - strand, within OH686_01110at 254.349 kb on + strand, within OH686_01110at 254.349 kb on + strand, within OH686_01110at 254.350 kb on - strand, within OH686_01110at 254.350 kb on - strand, within OH686_01110at 254.350 kb on - strand, within OH686_01110at 254.350 kb on - strand, within OH686_01110at 254.472 kb on + strand, within OH686_01110at 254.472 kb on + strand, within OH686_01110at 254.472 kb on + strand, within OH686_01110at 254.472 kb on + strand, within OH686_01110at 254.472 kb on + strand, within OH686_01110at 254.472 kb on + strand, within OH686_01110at 254.472 kb on + strand, within OH686_01110at 254.473 kb on - strand, within OH686_01110at 254.473 kb on - strand, within OH686_01110at 254.473 kb on - strand, within OH686_01110at 254.473 kb on - strand, within OH686_01110at 254.640 kb on + strand, within OH686_01110at 254.641 kb on - strand, within OH686_01110at 254.641 kb on - strand, within OH686_01110at 254.641 kb on - strand, within OH686_01110at 254.806 kb on + strandat 254.806 kb on + strandat 254.806 kb on + strandat 254.806 kb on + strandat 254.807 kb on - strandat 254.807 kb on - strandat 254.916 kb on + strandat 254.916 kb on + strandat 254.917 kb on - strandat 254.917 kb on - strandat 254.982 kb on + strandat 254.982 kb on + strandat 254.982 kb on + strandat 254.983 kb on - strandat 254.983 kb on - strandat 254.983 kb on - strandat 254.983 kb on - strandat 254.983 kb on - strandat 254.983 kb on - strandat 255.047 kb on + strand, within OH686_01115at 255.329 kb on + strandat 255.330 kb on - strandat 255.404 kb on + strand, within OH686_01120at 255.404 kb on + strand, within OH686_01120at 255.442 kb on - strand, within OH686_01120at 255.550 kb on + strand, within OH686_01120at 255.550 kb on + strand, within OH686_01120at 255.550 kb on + strand, within OH686_01120at 255.550 kb on + strand, within OH686_01120at 255.550 kb on + strand, within OH686_01120at 255.550 kb on + strand, within OH686_01120at 255.551 kb on - strand, within OH686_01120at 255.551 kb on - strand, within OH686_01120at 255.551 kb on - strand, within OH686_01120at 255.551 kb on - strand, within OH686_01120at 255.551 kb on - strand, within OH686_01120at 255.678 kb on - strandat 255.746 kb on + strandat 255.746 kb on + strandat 255.746 kb on + strandat 255.746 kb on + strandat 255.746 kb on + strandat 255.746 kb on + strandat 255.746 kb on + strandat 255.746 kb on + strandat 255.746 kb on + strandat 255.746 kb on + strandat 255.746 kb on + strandat 255.747 kb on - strandat 255.747 kb on - strandat 255.747 kb on - strandat 255.747 kb on - strandat 255.747 kb on - strandat 255.747 kb on - strandat 255.747 kb on - strandat 255.747 kb on - strandat 255.747 kb on - strandat 255.747 kb on - strandat 255.756 kb on + strandat 255.756 kb on + strandat 255.757 kb on - strandat 255.757 kb on - strandat 255.812 kb on - strandat 255.812 kb on - strandat 255.812 kb on - strandat 255.855 kb on + strandat 255.855 kb on + strandat 255.892 kb on + strand, within OH686_01125at 255.892 kb on + strand, within OH686_01125at 255.892 kb on + strand, within OH686_01125at 255.892 kb on + strand, within OH686_01125at 255.892 kb on + strand, within OH686_01125at 255.892 kb on + strand, within OH686_01125at 255.892 kb on + strand, within OH686_01125at 255.892 kb on + strand, within OH686_01125at 255.892 kb on + strand, within OH686_01125at 255.892 kb on + strand, within OH686_01125at 255.892 kb on + strand, within OH686_01125at 255.892 kb on + strand, within OH686_01125at 255.892 kb on + strand, within OH686_01125at 255.892 kb on + strand, within OH686_01125at 255.892 kb on + strand, within OH686_01125at 255.892 kb on + strand, within OH686_01125at 255.892 kb on + strand, within OH686_01125at 255.892 kb on + strand, within OH686_01125at 255.892 kb on + strand, within OH686_01125at 255.892 kb on + strand, within OH686_01125at 255.892 kb on + strand, within OH686_01125at 255.893 kb on - strand, within OH686_01125at 255.893 kb on - strand, within OH686_01125at 255.893 kb on - strand, within OH686_01125at 255.893 kb on - strand, within OH686_01125at 255.893 kb on - strand, within OH686_01125at 255.893 kb on - strand, within OH686_01125at 255.893 kb on - strand, within OH686_01125at 255.893 kb on - strand, within OH686_01125at 255.893 kb on - strand, within OH686_01125at 255.893 kb on - strand, within OH686_01125at 255.893 kb on - strand, within OH686_01125at 255.893 kb on - strand, within OH686_01125at 255.893 kb on - strand, within OH686_01125at 255.893 kb on - strand, within OH686_01125at 255.893 kb on - strand, within OH686_01125at 255.893 kb on - strand, within OH686_01125at 255.893 kb on - strand, within OH686_01125

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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251,520 - OH686_01105 0.68 -0.1
251,520 - OH686_01105 0.68 -0.0
251,606 + OH686_01105 0.71 -0.4
251,607 - OH686_01105 0.71 -0.3
252,139 + OH686_01105 0.90 +0.2
252,139 + OH686_01105 0.90 -1.8
252,139 + OH686_01105 0.90 +0.9
252,154 + -0.2
252,166 + +0.4
252,166 + -0.4
252,166 + -0.2
252,166 + -1.0
252,167 - -0.7
252,167 - -0.9
252,575 + +1.7
252,612 + +0.0
252,613 - +0.1
252,741 + OH686_01110 0.13 -0.3
252,758 + OH686_01110 0.13 -0.4
252,806 + OH686_01110 0.15 -0.9
252,806 + OH686_01110 0.15 +1.8
252,806 + OH686_01110 0.15 -1.6
252,806 + OH686_01110 0.15 -0.8
252,806 + OH686_01110 0.15 +0.2
252,806 + OH686_01110 0.15 +0.1
252,806 + OH686_01110 0.15 -0.3
252,807 - OH686_01110 0.15 -0.5
252,807 - OH686_01110 0.15 -0.4
252,807 - OH686_01110 0.15 -0.2
252,807 - OH686_01110 0.15 -1.0
252,807 - OH686_01110 0.15 +0.9
252,807 - OH686_01110 0.15 -0.1
252,987 + OH686_01110 0.22 -0.5
252,987 + OH686_01110 0.22 +0.7
252,988 - OH686_01110 0.22 -0.6
252,988 - OH686_01110 0.22 -1.2
253,186 - OH686_01110 0.30 +0.3
253,186 - OH686_01110 0.30 +1.1
253,188 + OH686_01110 0.30 -0.4
253,188 + OH686_01110 0.30 -0.2
253,188 + OH686_01110 0.30 -0.5
253,189 - OH686_01110 0.30 -0.4
253,189 - OH686_01110 0.30 -0.4
253,189 - OH686_01110 0.30 +1.5
253,189 - OH686_01110 0.30 +0.6
253,481 + OH686_01110 0.41 -0.7
253,482 - OH686_01110 0.41 +0.3
253,482 - OH686_01110 0.41 -0.6
254,011 + OH686_01110 0.62 +0.1
254,011 + OH686_01110 0.62 -0.9
254,012 - OH686_01110 0.62 -0.3
254,151 + OH686_01110 0.67 -0.5
254,151 + OH686_01110 0.67 -0.9
254,152 - OH686_01110 0.67 -1.5
254,152 - OH686_01110 0.67 +1.1
254,241 + OH686_01110 0.71 -1.2
254,241 + OH686_01110 0.71 -0.4
254,242 - OH686_01110 0.71 -0.0
254,242 - OH686_01110 0.71 -0.1
254,298 + OH686_01110 0.73 -0.5
254,298 + OH686_01110 0.73 +0.3
254,299 - OH686_01110 0.73 +0.5
254,299 - OH686_01110 0.73 -0.8
254,299 - OH686_01110 0.73 +0.8
254,328 + OH686_01110 0.74 -0.7
254,329 - OH686_01110 0.74 -3.2
254,329 - OH686_01110 0.74 +0.3
254,329 - OH686_01110 0.74 +0.1
254,349 + OH686_01110 0.75 +0.9
254,349 + OH686_01110 0.75 +0.4
254,350 - OH686_01110 0.75 -1.3
254,350 - OH686_01110 0.75 -0.4
254,350 - OH686_01110 0.75 +1.5
254,350 - OH686_01110 0.75 +0.8
254,472 + OH686_01110 0.80 +0.1
254,472 + OH686_01110 0.80 -0.5
254,472 + OH686_01110 0.80 -0.8
254,472 + OH686_01110 0.80 -0.3
254,472 + OH686_01110 0.80 -0.0
254,472 + OH686_01110 0.80 +0.2
254,472 + OH686_01110 0.80 -0.1
254,473 - OH686_01110 0.80 +0.9
254,473 - OH686_01110 0.80 -1.0
254,473 - OH686_01110 0.80 -0.2
254,473 - OH686_01110 0.80 +0.9
254,640 + OH686_01110 0.86 -0.7
254,641 - OH686_01110 0.86 -1.4
254,641 - OH686_01110 0.86 -0.8
254,641 - OH686_01110 0.86 +0.3
254,806 + -0.4
254,806 + -1.4
254,806 + -0.0
254,806 + -0.1
254,807 - -0.1
254,807 - -0.1
254,916 + +0.5
254,916 + -0.4
254,917 - -0.3
254,917 - +0.1
254,982 + -0.0
254,982 + +0.4
254,982 + +0.2
254,983 - +1.6
254,983 - -0.5
254,983 - -0.3
254,983 - +1.3
254,983 - +0.7
254,983 - +0.1
255,047 + OH686_01115 0.17 +0.7
255,329 + -0.6
255,330 - -0.2
255,404 + OH686_01120 0.15 +0.0
255,404 + OH686_01120 0.15 -0.0
255,442 - OH686_01120 0.26 -0.2
255,550 + OH686_01120 0.60 +0.0
255,550 + OH686_01120 0.60 -0.3
255,550 + OH686_01120 0.60 -0.1
255,550 + OH686_01120 0.60 -0.1
255,550 + OH686_01120 0.60 +0.3
255,550 + OH686_01120 0.60 +0.3
255,551 - OH686_01120 0.60 +0.9
255,551 - OH686_01120 0.60 +1.2
255,551 - OH686_01120 0.60 -0.5
255,551 - OH686_01120 0.60 -0.6
255,551 - OH686_01120 0.60 +1.1
255,678 - -0.2
255,746 + +0.4
255,746 + +0.1
255,746 + +0.4
255,746 + +1.1
255,746 + -1.1
255,746 + -1.5
255,746 + +0.5
255,746 + +0.4
255,746 + +0.3
255,746 + -1.3
255,746 + +0.1
255,747 - -0.7
255,747 - +1.1
255,747 - +0.4
255,747 - -0.6
255,747 - -0.4
255,747 - +0.4
255,747 - -0.3
255,747 - +0.4
255,747 - -0.6
255,747 - +0.3
255,756 + -0.0
255,756 + -0.2
255,757 - +0.8
255,757 - +0.7
255,812 - -1.6
255,812 - -0.6
255,812 - -0.2
255,855 + -0.7
255,855 + -3.1
255,892 + OH686_01125 0.16 +0.4
255,892 + OH686_01125 0.16 +0.2
255,892 + OH686_01125 0.16 +1.9
255,892 + OH686_01125 0.16 +0.9
255,892 + OH686_01125 0.16 -0.0
255,892 + OH686_01125 0.16 +0.3
255,892 + OH686_01125 0.16 -0.1
255,892 + OH686_01125 0.16 -0.6
255,892 + OH686_01125 0.16 -0.1
255,892 + OH686_01125 0.16 -0.6
255,892 + OH686_01125 0.16 -0.4
255,892 + OH686_01125 0.16 -0.7
255,892 + OH686_01125 0.16 +0.3
255,892 + OH686_01125 0.16 +1.5
255,892 + OH686_01125 0.16 -0.4
255,892 + OH686_01125 0.16 -0.4
255,892 + OH686_01125 0.16 +0.4
255,892 + OH686_01125 0.16 +0.6
255,892 + OH686_01125 0.16 +0.6
255,892 + OH686_01125 0.16 -0.2
255,892 + OH686_01125 0.16 -0.7
255,893 - OH686_01125 0.16 +1.0
255,893 - OH686_01125 0.16 +0.6
255,893 - OH686_01125 0.16 +1.6
255,893 - OH686_01125 0.16 +0.3
255,893 - OH686_01125 0.16 -0.6
255,893 - OH686_01125 0.16 +0.3
255,893 - OH686_01125 0.16 +0.4
255,893 - OH686_01125 0.16 +0.3
255,893 - OH686_01125 0.16 -0.6
255,893 - OH686_01125 0.16 +0.4
255,893 - OH686_01125 0.16 -0.5
255,893 - OH686_01125 0.16 +0.1
255,893 - OH686_01125 0.16 +1.0
255,893 - OH686_01125 0.16 +1.0
255,893 - OH686_01125 0.16 -0.6
255,893 - OH686_01125 0.16 -0.7
255,893 - OH686_01125 0.16 -1.5

Or see this region's nucleotide sequence