Strain Fitness in Pseudomonas sp. S08-1 around OH686_00925

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_00920 and OH686_00925 overlap by 4 nucleotidesOH686_00925 and OH686_00930 overlap by 4 nucleotides OH686_00920: OH686_00920 - Multidrug efflux system MdtABC-TolC, membrane fusion component MdtA, at 183,408 to 184,610 _00920 OH686_00925: OH686_00925 - Multidrug efflux system MdtABC-TolC, inner-membrane proton/drug antiporter MdtB (RND type), at 184,607 to 187,705 _00925 OH686_00930: OH686_00930 - Multidrug efflux system MdtABC-TolC, inner-membrane proton/drug antiporter MdtC (RND type), at 187,702 to 190,809 _00930 Position (kb) 184 185 186 187 188Strain fitness (log2 ratio) -2 -1 0 1 2at 183.742 kb on - strand, within OH686_00920at 183.825 kb on + strand, within OH686_00920at 183.826 kb on - strand, within OH686_00920at 183.838 kb on - strand, within OH686_00920at 183.838 kb on - strand, within OH686_00920at 183.838 kb on - strand, within OH686_00920at 183.898 kb on - strand, within OH686_00920at 183.898 kb on - strand, within OH686_00920at 184.028 kb on + strand, within OH686_00920at 184.028 kb on + strand, within OH686_00920at 184.028 kb on + strand, within OH686_00920at 184.991 kb on + strand, within OH686_00925at 184.991 kb on + strand, within OH686_00925at 184.992 kb on - strand, within OH686_00925at 184.992 kb on - strand, within OH686_00925at 184.992 kb on - strand, within OH686_00925at 184.992 kb on - strand, within OH686_00925at 185.035 kb on + strand, within OH686_00925at 185.035 kb on + strand, within OH686_00925at 185.036 kb on - strand, within OH686_00925at 185.327 kb on + strand, within OH686_00925at 185.327 kb on + strand, within OH686_00925at 185.327 kb on + strand, within OH686_00925at 185.348 kb on + strand, within OH686_00925at 185.348 kb on + strand, within OH686_00925at 185.348 kb on + strand, within OH686_00925at 185.348 kb on + strand, within OH686_00925at 185.349 kb on - strand, within OH686_00925at 185.349 kb on - strand, within OH686_00925at 185.349 kb on - strand, within OH686_00925at 185.448 kb on + strand, within OH686_00925at 185.738 kb on + strand, within OH686_00925at 185.738 kb on + strand, within OH686_00925at 185.738 kb on + strand, within OH686_00925at 185.738 kb on + strand, within OH686_00925at 185.738 kb on + strand, within OH686_00925at 185.738 kb on + strand, within OH686_00925at 185.738 kb on + strand, within OH686_00925at 185.739 kb on - strand, within OH686_00925at 185.739 kb on - strand, within OH686_00925at 185.739 kb on - strand, within OH686_00925at 185.739 kb on - strand, within OH686_00925at 185.739 kb on - strand, within OH686_00925at 185.739 kb on - strand, within OH686_00925at 185.739 kb on - strand, within OH686_00925at 185.960 kb on - strand, within OH686_00925at 185.960 kb on - strand, within OH686_00925at 186.110 kb on + strand, within OH686_00925at 186.110 kb on + strand, within OH686_00925at 186.110 kb on + strand, within OH686_00925at 186.110 kb on + strand, within OH686_00925at 186.110 kb on + strand, within OH686_00925at 186.111 kb on - strand, within OH686_00925at 186.111 kb on - strand, within OH686_00925at 186.111 kb on - strand, within OH686_00925at 186.111 kb on - strand, within OH686_00925at 186.111 kb on - strand, within OH686_00925at 186.239 kb on + strand, within OH686_00925at 186.240 kb on - strand, within OH686_00925at 186.295 kb on + strand, within OH686_00925at 186.296 kb on - strand, within OH686_00925at 186.296 kb on - strand, within OH686_00925at 186.366 kb on + strand, within OH686_00925at 186.366 kb on + strand, within OH686_00925at 186.367 kb on - strand, within OH686_00925at 186.401 kb on + strand, within OH686_00925at 186.402 kb on - strand, within OH686_00925at 186.402 kb on - strand, within OH686_00925at 186.548 kb on + strand, within OH686_00925at 186.548 kb on + strand, within OH686_00925at 186.548 kb on + strand, within OH686_00925at 186.548 kb on + strand, within OH686_00925at 186.548 kb on + strand, within OH686_00925at 186.548 kb on + strand, within OH686_00925at 186.548 kb on + strand, within OH686_00925at 186.548 kb on + strand, within OH686_00925at 186.549 kb on - strand, within OH686_00925at 186.549 kb on - strand, within OH686_00925at 186.639 kb on + strand, within OH686_00925at 186.639 kb on + strand, within OH686_00925at 186.639 kb on + strand, within OH686_00925at 186.803 kb on + strand, within OH686_00925at 186.803 kb on + strand, within OH686_00925at 186.804 kb on - strand, within OH686_00925at 186.804 kb on - strand, within OH686_00925at 186.858 kb on - strand, within OH686_00925at 187.007 kb on - strand, within OH686_00925at 187.211 kb on + strand, within OH686_00925at 187.211 kb on + strand, within OH686_00925at 187.211 kb on + strand, within OH686_00925at 187.211 kb on + strand, within OH686_00925at 187.211 kb on + strand, within OH686_00925at 187.211 kb on + strand, within OH686_00925at 187.211 kb on + strand, within OH686_00925at 187.211 kb on + strand, within OH686_00925at 187.211 kb on + strand, within OH686_00925at 187.211 kb on + strand, within OH686_00925at 187.211 kb on + strand, within OH686_00925at 187.211 kb on + strand, within OH686_00925at 187.211 kb on + strand, within OH686_00925at 187.211 kb on + strand, within OH686_00925at 187.211 kb on + strand, within OH686_00925at 187.211 kb on + strand, within OH686_00925at 187.211 kb on + strand, within OH686_00925at 187.211 kb on + strand, within OH686_00925at 187.211 kb on + strand, within OH686_00925at 187.212 kb on - strand, within OH686_00925at 187.212 kb on - strand, within OH686_00925at 187.212 kb on - strand, within OH686_00925at 187.212 kb on - strand, within OH686_00925at 187.212 kb on - strand, within OH686_00925at 187.212 kb on - strand, within OH686_00925at 187.212 kb on - strand, within OH686_00925at 187.212 kb on - strand, within OH686_00925at 187.212 kb on - strand, within OH686_00925at 187.212 kb on - strand, within OH686_00925at 187.212 kb on - strand, within OH686_00925at 187.212 kb on - strand, within OH686_00925at 187.212 kb on - strand, within OH686_00925at 187.233 kb on - strand, within OH686_00925at 187.241 kb on + strand, within OH686_00925at 187.241 kb on + strand, within OH686_00925at 187.241 kb on + strand, within OH686_00925at 187.241 kb on + strand, within OH686_00925at 187.241 kb on + strand, within OH686_00925at 187.241 kb on + strand, within OH686_00925at 187.241 kb on + strand, within OH686_00925at 187.241 kb on + strand, within OH686_00925at 187.241 kb on + strand, within OH686_00925at 187.241 kb on + strand, within OH686_00925at 187.241 kb on + strand, within OH686_00925at 187.241 kb on + strand, within OH686_00925at 187.242 kb on - strand, within OH686_00925at 187.242 kb on - strand, within OH686_00925at 187.242 kb on - strand, within OH686_00925at 187.242 kb on - strand, within OH686_00925at 187.242 kb on - strand, within OH686_00925at 187.242 kb on - strand, within OH686_00925at 187.242 kb on - strand, within OH686_00925at 187.242 kb on - strand, within OH686_00925at 187.242 kb on - strand, within OH686_00925at 187.242 kb on - strand, within OH686_00925at 187.242 kb on - strand, within OH686_00925at 187.242 kb on - strand, within OH686_00925at 187.242 kb on - strand, within OH686_00925at 187.242 kb on - strand, within OH686_00925at 187.242 kb on - strand, within OH686_00925at 187.242 kb on - strand, within OH686_00925at 187.242 kb on - strand, within OH686_00925at 187.242 kb on - strand, within OH686_00925at 187.242 kb on - strand, within OH686_00925at 187.242 kb on - strand, within OH686_00925at 187.242 kb on - strand, within OH686_00925at 187.242 kb on - strand, within OH686_00925at 187.242 kb on - strand, within OH686_00925at 187.243 kb on + strand, within OH686_00925at 187.243 kb on + strand, within OH686_00925at 187.451 kb on + strandat 187.451 kb on + strandat 187.451 kb on + strandat 187.451 kb on + strandat 187.451 kb on + strandat 187.452 kb on - strandat 187.452 kb on - strandat 187.452 kb on - strandat 187.452 kb on - strandat 187.452 kb on - strandat 187.452 kb on - strandat 187.452 kb on - strandat 187.452 kb on - strandat 187.452 kb on - strandat 187.452 kb on - strandat 187.614 kb on + strandat 187.615 kb on - strandat 187.615 kb on - strandat 187.615 kb on - strandat 187.615 kb on - strandat 187.634 kb on + strandat 187.634 kb on + strandat 187.634 kb on + strandat 187.634 kb on + strandat 188.086 kb on + strand, within OH686_00930at 188.086 kb on + strand, within OH686_00930at 188.086 kb on + strand, within OH686_00930at 188.086 kb on + strand, within OH686_00930at 188.086 kb on + strand, within OH686_00930at 188.086 kb on + strand, within OH686_00930at 188.086 kb on + strand, within OH686_00930at 188.086 kb on + strand, within OH686_00930at 188.086 kb on + strand, within OH686_00930at 188.086 kb on + strand, within OH686_00930at 188.086 kb on + strand, within OH686_00930at 188.087 kb on - strand, within OH686_00930at 188.087 kb on - strand, within OH686_00930at 188.087 kb on - strand, within OH686_00930at 188.087 kb on - strand, within OH686_00930at 188.087 kb on - strand, within OH686_00930at 188.088 kb on + strand, within OH686_00930at 188.088 kb on + strand, within OH686_00930at 188.088 kb on + strand, within OH686_00930at 188.164 kb on + strand, within OH686_00930at 188.164 kb on + strand, within OH686_00930at 188.165 kb on - strand, within OH686_00930at 188.165 kb on - strand, within OH686_00930at 188.165 kb on - strand, within OH686_00930at 188.165 kb on - strand, within OH686_00930at 188.165 kb on - strand, within OH686_00930at 188.165 kb on - strand, within OH686_00930at 188.290 kb on + strand, within OH686_00930at 188.524 kb on + strand, within OH686_00930at 188.524 kb on + strand, within OH686_00930at 188.524 kb on + strand, within OH686_00930at 188.524 kb on + strand, within OH686_00930at 188.524 kb on + strand, within OH686_00930at 188.524 kb on + strand, within OH686_00930at 188.524 kb on + strand, within OH686_00930at 188.524 kb on + strand, within OH686_00930at 188.524 kb on + strand, within OH686_00930at 188.524 kb on + strand, within OH686_00930at 188.525 kb on - strand, within OH686_00930at 188.525 kb on - strand, within OH686_00930at 188.525 kb on - strand, within OH686_00930at 188.525 kb on - strand, within OH686_00930at 188.525 kb on - strand, within OH686_00930at 188.525 kb on - strand, within OH686_00930at 188.525 kb on - strand, within OH686_00930at 188.525 kb on - strand, within OH686_00930at 188.525 kb on - strand, within OH686_00930at 188.525 kb on - strand, within OH686_00930at 188.527 kb on - strand, within OH686_00930

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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183,742 - OH686_00920 0.28 +0.7
183,825 + OH686_00920 0.35 -1.0
183,826 - OH686_00920 0.35 +0.5
183,838 - OH686_00920 0.36 -0.5
183,838 - OH686_00920 0.36 -0.0
183,838 - OH686_00920 0.36 +0.0
183,898 - OH686_00920 0.41 -2.2
183,898 - OH686_00920 0.41 +0.1
184,028 + OH686_00920 0.52 -0.7
184,028 + OH686_00920 0.52 +0.5
184,028 + OH686_00920 0.52 -0.6
184,991 + OH686_00925 0.12 -0.5
184,991 + OH686_00925 0.12 +0.7
184,992 - OH686_00925 0.12 -0.9
184,992 - OH686_00925 0.12 +0.1
184,992 - OH686_00925 0.12 -0.5
184,992 - OH686_00925 0.12 +0.2
185,035 + OH686_00925 0.14 -0.9
185,035 + OH686_00925 0.14 -0.6
185,036 - OH686_00925 0.14 -0.7
185,327 + OH686_00925 0.23 +0.3
185,327 + OH686_00925 0.23 +1.2
185,327 + OH686_00925 0.23 -0.2
185,348 + OH686_00925 0.24 -0.3
185,348 + OH686_00925 0.24 -1.8
185,348 + OH686_00925 0.24 +0.0
185,348 + OH686_00925 0.24 +0.7
185,349 - OH686_00925 0.24 +1.1
185,349 - OH686_00925 0.24 -0.9
185,349 - OH686_00925 0.24 +0.7
185,448 + OH686_00925 0.27 -1.0
185,738 + OH686_00925 0.36 +0.2
185,738 + OH686_00925 0.36 +0.7
185,738 + OH686_00925 0.36 -1.3
185,738 + OH686_00925 0.36 -0.7
185,738 + OH686_00925 0.36 -0.4
185,738 + OH686_00925 0.36 +0.5
185,738 + OH686_00925 0.36 -0.7
185,739 - OH686_00925 0.37 +0.4
185,739 - OH686_00925 0.37 +0.5
185,739 - OH686_00925 0.37 -0.9
185,739 - OH686_00925 0.37 -0.6
185,739 - OH686_00925 0.37 -1.4
185,739 - OH686_00925 0.37 -0.4
185,739 - OH686_00925 0.37 -1.6
185,960 - OH686_00925 0.44 -0.2
185,960 - OH686_00925 0.44 -0.4
186,110 + OH686_00925 0.48 +1.5
186,110 + OH686_00925 0.48 -0.0
186,110 + OH686_00925 0.48 -0.1
186,110 + OH686_00925 0.48 -0.3
186,110 + OH686_00925 0.48 -0.4
186,111 - OH686_00925 0.49 -1.0
186,111 - OH686_00925 0.49 -0.0
186,111 - OH686_00925 0.49 +0.6
186,111 - OH686_00925 0.49 -0.3
186,111 - OH686_00925 0.49 +0.5
186,239 + OH686_00925 0.53 -0.1
186,240 - OH686_00925 0.53 -0.2
186,295 + OH686_00925 0.54 +0.4
186,296 - OH686_00925 0.55 -0.1
186,296 - OH686_00925 0.55 +0.5
186,366 + OH686_00925 0.57 +0.4
186,366 + OH686_00925 0.57 -0.3
186,367 - OH686_00925 0.57 -0.0
186,401 + OH686_00925 0.58 +0.9
186,402 - OH686_00925 0.58 -0.2
186,402 - OH686_00925 0.58 -0.2
186,548 + OH686_00925 0.63 -1.0
186,548 + OH686_00925 0.63 +0.5
186,548 + OH686_00925 0.63 -0.6
186,548 + OH686_00925 0.63 +0.2
186,548 + OH686_00925 0.63 -0.4
186,548 + OH686_00925 0.63 -1.1
186,548 + OH686_00925 0.63 +1.3
186,548 + OH686_00925 0.63 -0.2
186,549 - OH686_00925 0.63 -0.2
186,549 - OH686_00925 0.63 -0.4
186,639 + OH686_00925 0.66 +0.3
186,639 + OH686_00925 0.66 -0.6
186,639 + OH686_00925 0.66 +0.8
186,803 + OH686_00925 0.71 -1.3
186,803 + OH686_00925 0.71 +1.6
186,804 - OH686_00925 0.71 +0.3
186,804 - OH686_00925 0.71 +2.1
186,858 - OH686_00925 0.73 +0.4
187,007 - OH686_00925 0.77 +0.3
187,211 + OH686_00925 0.84 -0.1
187,211 + OH686_00925 0.84 -0.4
187,211 + OH686_00925 0.84 -1.6
187,211 + OH686_00925 0.84 +0.8
187,211 + OH686_00925 0.84 +0.5
187,211 + OH686_00925 0.84 +0.0
187,211 + OH686_00925 0.84 -0.1
187,211 + OH686_00925 0.84 +0.5
187,211 + OH686_00925 0.84 -0.1
187,211 + OH686_00925 0.84 -1.1
187,211 + OH686_00925 0.84 +0.7
187,211 + OH686_00925 0.84 -1.2
187,211 + OH686_00925 0.84 +0.7
187,211 + OH686_00925 0.84 +0.3
187,211 + OH686_00925 0.84 +0.1
187,211 + OH686_00925 0.84 +0.4
187,211 + OH686_00925 0.84 -1.8
187,211 + OH686_00925 0.84 +1.2
187,211 + OH686_00925 0.84 +0.1
187,212 - OH686_00925 0.84 -0.9
187,212 - OH686_00925 0.84 +1.0
187,212 - OH686_00925 0.84 +0.7
187,212 - OH686_00925 0.84 +0.1
187,212 - OH686_00925 0.84 -0.3
187,212 - OH686_00925 0.84 -0.5
187,212 - OH686_00925 0.84 -0.8
187,212 - OH686_00925 0.84 -0.1
187,212 - OH686_00925 0.84 +0.0
187,212 - OH686_00925 0.84 -0.2
187,212 - OH686_00925 0.84 -0.2
187,212 - OH686_00925 0.84 -0.2
187,212 - OH686_00925 0.84 +0.2
187,233 - OH686_00925 0.85 +0.7
187,241 + OH686_00925 0.85 -0.8
187,241 + OH686_00925 0.85 +0.7
187,241 + OH686_00925 0.85 -0.4
187,241 + OH686_00925 0.85 -1.2
187,241 + OH686_00925 0.85 -0.9
187,241 + OH686_00925 0.85 +0.0
187,241 + OH686_00925 0.85 -0.4
187,241 + OH686_00925 0.85 +0.3
187,241 + OH686_00925 0.85 +0.2
187,241 + OH686_00925 0.85 +0.2
187,241 + OH686_00925 0.85 -0.4
187,241 + OH686_00925 0.85 -0.3
187,242 - OH686_00925 0.85 -0.5
187,242 - OH686_00925 0.85 -0.3
187,242 - OH686_00925 0.85 +0.5
187,242 - OH686_00925 0.85 -1.2
187,242 - OH686_00925 0.85 -0.1
187,242 - OH686_00925 0.85 -0.0
187,242 - OH686_00925 0.85 +0.6
187,242 - OH686_00925 0.85 -0.6
187,242 - OH686_00925 0.85 +0.7
187,242 - OH686_00925 0.85 -1.3
187,242 - OH686_00925 0.85 +0.6
187,242 - OH686_00925 0.85 -0.5
187,242 - OH686_00925 0.85 +0.3
187,242 - OH686_00925 0.85 +1.4
187,242 - OH686_00925 0.85 -1.6
187,242 - OH686_00925 0.85 -0.3
187,242 - OH686_00925 0.85 -0.6
187,242 - OH686_00925 0.85 -0.8
187,242 - OH686_00925 0.85 +1.1
187,242 - OH686_00925 0.85 -0.0
187,242 - OH686_00925 0.85 -0.1
187,242 - OH686_00925 0.85 -0.4
187,242 - OH686_00925 0.85 -0.4
187,243 + OH686_00925 0.85 +0.1
187,243 + OH686_00925 0.85 +0.3
187,451 + -0.1
187,451 + +0.4
187,451 + +0.1
187,451 + -0.3
187,451 + +0.3
187,452 - +0.1
187,452 - -0.2
187,452 - -0.6
187,452 - +0.9
187,452 - -0.8
187,452 - +0.7
187,452 - +0.6
187,452 - -0.9
187,452 - +1.1
187,452 - -0.9
187,614 + -1.3
187,615 - +1.1
187,615 - -1.2
187,615 - -0.3
187,615 - +0.4
187,634 + -2.3
187,634 + -0.6
187,634 + +0.1
187,634 + +0.4
188,086 + OH686_00930 0.12 -0.0
188,086 + OH686_00930 0.12 -0.0
188,086 + OH686_00930 0.12 +0.3
188,086 + OH686_00930 0.12 +0.3
188,086 + OH686_00930 0.12 +1.6
188,086 + OH686_00930 0.12 -1.4
188,086 + OH686_00930 0.12 +1.3
188,086 + OH686_00930 0.12 -0.8
188,086 + OH686_00930 0.12 +1.0
188,086 + OH686_00930 0.12 -0.7
188,086 + OH686_00930 0.12 -0.4
188,087 - OH686_00930 0.12 +0.2
188,087 - OH686_00930 0.12 -0.9
188,087 - OH686_00930 0.12 +0.2
188,087 - OH686_00930 0.12 -0.0
188,087 - OH686_00930 0.12 -0.9
188,088 + OH686_00930 0.12 -0.8
188,088 + OH686_00930 0.12 -0.4
188,088 + OH686_00930 0.12 -0.3
188,164 + OH686_00930 0.15 +0.0
188,164 + OH686_00930 0.15 +2.1
188,165 - OH686_00930 0.15 +1.1
188,165 - OH686_00930 0.15 -1.6
188,165 - OH686_00930 0.15 -0.8
188,165 - OH686_00930 0.15 +1.1
188,165 - OH686_00930 0.15 -0.0
188,165 - OH686_00930 0.15 -0.0
188,290 + OH686_00930 0.19 -0.4
188,524 + OH686_00930 0.26 +0.7
188,524 + OH686_00930 0.26 -0.1
188,524 + OH686_00930 0.26 -0.6
188,524 + OH686_00930 0.26 -0.4
188,524 + OH686_00930 0.26 -0.3
188,524 + OH686_00930 0.26 -1.5
188,524 + OH686_00930 0.26 -1.3
188,524 + OH686_00930 0.26 -0.2
188,524 + OH686_00930 0.26 +1.1
188,524 + OH686_00930 0.26 -0.5
188,525 - OH686_00930 0.26 -0.4
188,525 - OH686_00930 0.26 -0.9
188,525 - OH686_00930 0.26 +0.5
188,525 - OH686_00930 0.26 -0.8
188,525 - OH686_00930 0.26 -1.6
188,525 - OH686_00930 0.26 -2.0
188,525 - OH686_00930 0.26 -0.3
188,525 - OH686_00930 0.26 -1.1
188,525 - OH686_00930 0.26 +1.1
188,525 - OH686_00930 0.26 -1.4
188,527 - OH686_00930 0.27 +0.1

Or see this region's nucleotide sequence