Strain Fitness in Variovorax sp. OAS795 around ABID97_RS25285

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS25275 and ABID97_RS25280 are separated by 11 nucleotidesABID97_RS25280 and ABID97_RS25285 are separated by 6 nucleotidesABID97_RS25285 and ABID97_RS25290 are separated by 147 nucleotidesABID97_RS25290 and ABID97_RS25295 overlap by 4 nucleotides ABID97_RS25275: ABID97_RS25275 - metallophosphoesterase, at 5,237,677 to 5,238,501 _RS25275 ABID97_RS25280: ABID97_RS25280 - phosphatase PAP2 family protein, at 5,238,513 to 5,239,331 _RS25280 ABID97_RS25285: ABID97_RS25285 - asparaginase, at 5,239,338 to 5,240,408 _RS25285 ABID97_RS25290: ABID97_RS25290 - TetR family transcriptional regulator C-terminal domain-containing protein, at 5,240,556 to 5,241,233 _RS25290 ABID97_RS25295: ABID97_RS25295 - LysR family transcriptional regulator, at 5,241,230 to 5,242,174 _RS25295 Position (kb) 5239 5240 5241Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5238.338 kb on + strand, within ABID97_RS25275at 5238.461 kb on + strandat 5238.461 kb on + strandat 5238.462 kb on - strandat 5238.462 kb on - strandat 5238.462 kb on - strandat 5238.499 kb on + strandat 5238.747 kb on + strand, within ABID97_RS25280at 5238.747 kb on + strand, within ABID97_RS25280at 5238.747 kb on + strand, within ABID97_RS25280at 5238.748 kb on - strand, within ABID97_RS25280at 5238.748 kb on - strand, within ABID97_RS25280at 5238.748 kb on - strand, within ABID97_RS25280at 5239.101 kb on + strand, within ABID97_RS25280at 5239.102 kb on - strand, within ABID97_RS25280at 5239.116 kb on + strand, within ABID97_RS25280at 5239.116 kb on + strand, within ABID97_RS25280at 5239.116 kb on + strand, within ABID97_RS25280at 5239.116 kb on + strand, within ABID97_RS25280at 5239.117 kb on - strand, within ABID97_RS25280at 5239.117 kb on - strand, within ABID97_RS25280at 5239.117 kb on - strand, within ABID97_RS25280at 5239.117 kb on - strand, within ABID97_RS25280at 5239.297 kb on - strandat 5239.342 kb on + strandat 5239.342 kb on + strandat 5239.343 kb on - strandat 5239.343 kb on - strandat 5239.343 kb on - strandat 5239.453 kb on + strand, within ABID97_RS25285at 5239.453 kb on + strand, within ABID97_RS25285at 5239.453 kb on + strand, within ABID97_RS25285at 5239.454 kb on - strand, within ABID97_RS25285at 5239.454 kb on - strand, within ABID97_RS25285at 5239.454 kb on - strand, within ABID97_RS25285at 5239.454 kb on - strand, within ABID97_RS25285at 5239.454 kb on - strand, within ABID97_RS25285at 5239.454 kb on - strand, within ABID97_RS25285at 5239.454 kb on - strand, within ABID97_RS25285at 5239.454 kb on - strand, within ABID97_RS25285at 5239.454 kb on - strand, within ABID97_RS25285at 5239.454 kb on - strand, within ABID97_RS25285at 5239.660 kb on + strand, within ABID97_RS25285at 5239.660 kb on + strand, within ABID97_RS25285at 5239.756 kb on + strand, within ABID97_RS25285at 5239.756 kb on + strand, within ABID97_RS25285at 5239.757 kb on - strand, within ABID97_RS25285at 5239.757 kb on - strand, within ABID97_RS25285at 5239.927 kb on + strand, within ABID97_RS25285at 5239.927 kb on + strand, within ABID97_RS25285at 5239.928 kb on - strand, within ABID97_RS25285at 5240.248 kb on + strand, within ABID97_RS25285at 5240.249 kb on - strand, within ABID97_RS25285at 5240.405 kb on - strandat 5240.405 kb on - strandat 5240.428 kb on + strandat 5240.458 kb on + strandat 5240.459 kb on - strandat 5240.520 kb on + strandat 5240.520 kb on + strandat 5240.521 kb on - strandat 5240.521 kb on - strandat 5240.767 kb on - strand, within ABID97_RS25290at 5240.767 kb on - strand, within ABID97_RS25290at 5240.767 kb on - strand, within ABID97_RS25290at 5240.769 kb on + strand, within ABID97_RS25290at 5240.769 kb on + strand, within ABID97_RS25290at 5240.769 kb on + strand, within ABID97_RS25290at 5240.769 kb on + strand, within ABID97_RS25290at 5240.769 kb on + strand, within ABID97_RS25290at 5240.769 kb on + strand, within ABID97_RS25290at 5240.770 kb on - strand, within ABID97_RS25290at 5240.770 kb on - strand, within ABID97_RS25290at 5240.794 kb on - strand, within ABID97_RS25290at 5240.883 kb on + strand, within ABID97_RS25290at 5240.883 kb on + strand, within ABID97_RS25290at 5240.883 kb on + strand, within ABID97_RS25290at 5240.884 kb on - strand, within ABID97_RS25290at 5240.884 kb on - strand, within ABID97_RS25290at 5240.980 kb on - strand, within ABID97_RS25290at 5240.980 kb on - strand, within ABID97_RS25290at 5240.980 kb on - strand, within ABID97_RS25290at 5241.108 kb on + strand, within ABID97_RS25290at 5241.109 kb on - strand, within ABID97_RS25290at 5241.109 kb on - strand, within ABID97_RS25290at 5241.125 kb on - strand, within ABID97_RS25290at 5241.231 kb on + strandat 5241.231 kb on + strandat 5241.232 kb on - strandat 5241.232 kb on - strandat 5241.232 kb on - strandat 5241.333 kb on + strand, within ABID97_RS25295at 5241.333 kb on + strand, within ABID97_RS25295at 5241.342 kb on + strand, within ABID97_RS25295at 5241.342 kb on + strand, within ABID97_RS25295at 5241.342 kb on + strand, within ABID97_RS25295at 5241.342 kb on + strand, within ABID97_RS25295at 5241.343 kb on - strand, within ABID97_RS25295

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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5,238,338 + ABID97_RS25275 0.80 +0.7
5,238,461 + +0.2
5,238,461 + -0.3
5,238,462 - +0.4
5,238,462 - -0.2
5,238,462 - +0.4
5,238,499 + +0.6
5,238,747 + ABID97_RS25280 0.29 -0.0
5,238,747 + ABID97_RS25280 0.29 -0.4
5,238,747 + ABID97_RS25280 0.29 -0.3
5,238,748 - ABID97_RS25280 0.29 -0.2
5,238,748 - ABID97_RS25280 0.29 +0.4
5,238,748 - ABID97_RS25280 0.29 -0.1
5,239,101 + ABID97_RS25280 0.72 +0.4
5,239,102 - ABID97_RS25280 0.72 +0.3
5,239,116 + ABID97_RS25280 0.74 +0.5
5,239,116 + ABID97_RS25280 0.74 -0.7
5,239,116 + ABID97_RS25280 0.74 -0.0
5,239,116 + ABID97_RS25280 0.74 -0.4
5,239,117 - ABID97_RS25280 0.74 -2.0
5,239,117 - ABID97_RS25280 0.74 -0.4
5,239,117 - ABID97_RS25280 0.74 -0.2
5,239,117 - ABID97_RS25280 0.74 +1.1
5,239,297 - -2.4
5,239,342 + -0.3
5,239,342 + +0.3
5,239,343 - +0.1
5,239,343 - -0.9
5,239,343 - +0.4
5,239,453 + ABID97_RS25285 0.11 -0.3
5,239,453 + ABID97_RS25285 0.11 -0.2
5,239,453 + ABID97_RS25285 0.11 +0.2
5,239,454 - ABID97_RS25285 0.11 +0.6
5,239,454 - ABID97_RS25285 0.11 -0.3
5,239,454 - ABID97_RS25285 0.11 -0.5
5,239,454 - ABID97_RS25285 0.11 -0.2
5,239,454 - ABID97_RS25285 0.11 +1.1
5,239,454 - ABID97_RS25285 0.11 +0.1
5,239,454 - ABID97_RS25285 0.11 -0.5
5,239,454 - ABID97_RS25285 0.11 -0.2
5,239,454 - ABID97_RS25285 0.11 -0.4
5,239,454 - ABID97_RS25285 0.11 -0.1
5,239,660 + ABID97_RS25285 0.30 +0.1
5,239,660 + ABID97_RS25285 0.30 -0.1
5,239,756 + ABID97_RS25285 0.39 -0.2
5,239,756 + ABID97_RS25285 0.39 +0.0
5,239,757 - ABID97_RS25285 0.39 -1.7
5,239,757 - ABID97_RS25285 0.39 +0.5
5,239,927 + ABID97_RS25285 0.55 -0.4
5,239,927 + ABID97_RS25285 0.55 +2.3
5,239,928 - ABID97_RS25285 0.55 -0.0
5,240,248 + ABID97_RS25285 0.85 +0.5
5,240,249 - ABID97_RS25285 0.85 +3.1
5,240,405 - +0.3
5,240,405 - -0.5
5,240,428 + -0.0
5,240,458 + -0.1
5,240,459 - -0.4
5,240,520 + -0.1
5,240,520 + -0.4
5,240,521 - -0.7
5,240,521 - -0.6
5,240,767 - ABID97_RS25290 0.31 -0.4
5,240,767 - ABID97_RS25290 0.31 -0.2
5,240,767 - ABID97_RS25290 0.31 +1.1
5,240,769 + ABID97_RS25290 0.31 +0.1
5,240,769 + ABID97_RS25290 0.31 -0.2
5,240,769 + ABID97_RS25290 0.31 -1.1
5,240,769 + ABID97_RS25290 0.31 -0.4
5,240,769 + ABID97_RS25290 0.31 -0.4
5,240,769 + ABID97_RS25290 0.31 -0.7
5,240,770 - ABID97_RS25290 0.32 -0.0
5,240,770 - ABID97_RS25290 0.32 -0.4
5,240,794 - ABID97_RS25290 0.35 -0.7
5,240,883 + ABID97_RS25290 0.48 -1.0
5,240,883 + ABID97_RS25290 0.48 +0.1
5,240,883 + ABID97_RS25290 0.48 +0.0
5,240,884 - ABID97_RS25290 0.48 -0.2
5,240,884 - ABID97_RS25290 0.48 -0.6
5,240,980 - ABID97_RS25290 0.63 -0.7
5,240,980 - ABID97_RS25290 0.63 -1.9
5,240,980 - ABID97_RS25290 0.63 -0.9
5,241,108 + ABID97_RS25290 0.81 -0.2
5,241,109 - ABID97_RS25290 0.82 -0.3
5,241,109 - ABID97_RS25290 0.82 -0.4
5,241,125 - ABID97_RS25290 0.84 +0.0
5,241,231 + -0.1
5,241,231 + -0.4
5,241,232 - -0.2
5,241,232 - +0.1
5,241,232 - -0.2
5,241,333 + ABID97_RS25295 0.11 -0.3
5,241,333 + ABID97_RS25295 0.11 +0.1
5,241,342 + ABID97_RS25295 0.12 -0.2
5,241,342 + ABID97_RS25295 0.12 +0.6
5,241,342 + ABID97_RS25295 0.12 +1.1
5,241,342 + ABID97_RS25295 0.12 -0.4
5,241,343 - ABID97_RS25295 0.12 +0.2

Or see this region's nucleotide sequence