Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS21445 and ABID97_RS21450 are separated by 50 nucleotides ABID97_RS21450 and ABID97_RS21455 overlap by 4 nucleotides ABID97_RS21455 and ABID97_RS21460 are separated by 13 nucleotides
ABID97_RS21445: ABID97_RS21445 - siderophore-iron reductase FhuF, at 4,422,806 to 4,423,534
_RS21445
ABID97_RS21450: ABID97_RS21450 - formyltransferase family protein, at 4,423,585 to 4,424,436
_RS21450
ABID97_RS21455: ABID97_RS21455 - GNAT family N-acetyltransferase, at 4,424,433 to 4,425,470
_RS21455
ABID97_RS21460: ABID97_RS21460 - lysine N(6)-hydroxylase/L-ornithine N(5)-oxygenase family protein, at 4,425,484 to 4,426,815
_RS21460
Position (kb) 4424
4425
4426 Strain fitness (log2 ratio) -1
0
1 at 4423.660 kb on + strand at 4423.660 kb on + strand at 4423.679 kb on - strand, within ABID97_RS21450 at 4423.679 kb on - strand, within ABID97_RS21450 at 4423.699 kb on + strand, within ABID97_RS21450 at 4423.699 kb on + strand, within ABID97_RS21450 at 4423.742 kb on - strand, within ABID97_RS21450 at 4424.123 kb on - strand, within ABID97_RS21450 at 4424.127 kb on - strand, within ABID97_RS21450 at 4424.127 kb on - strand, within ABID97_RS21450 at 4424.251 kb on + strand, within ABID97_RS21450 at 4424.251 kb on + strand, within ABID97_RS21450 at 4424.252 kb on - strand, within ABID97_RS21450 at 4424.519 kb on + strand at 4424.871 kb on + strand, within ABID97_RS21455 at 4425.054 kb on + strand, within ABID97_RS21455 at 4425.055 kb on - strand, within ABID97_RS21455 at 4425.105 kb on + strand, within ABID97_RS21455 at 4425.105 kb on + strand, within ABID97_RS21455 at 4425.240 kb on + strand, within ABID97_RS21455 at 4425.240 kb on + strand, within ABID97_RS21455 at 4425.241 kb on - strand, within ABID97_RS21455 at 4425.241 kb on - strand, within ABID97_RS21455 at 4425.403 kb on - strand at 4425.718 kb on + strand, within ABID97_RS21460 at 4425.718 kb on + strand, within ABID97_RS21460 at 4425.719 kb on - strand, within ABID97_RS21460 at 4426.246 kb on + strand, within ABID97_RS21460 at 4426.246 kb on + strand, within ABID97_RS21460 at 4426.246 kb on + strand, within ABID97_RS21460 at 4426.246 kb on + strand, within ABID97_RS21460 at 4426.247 kb on - strand, within ABID97_RS21460 at 4426.247 kb on - strand, within ABID97_RS21460 at 4426.247 kb on - strand, within ABID97_RS21460 at 4426.247 kb on - strand, within ABID97_RS21460 at 4426.252 kb on + strand, within ABID97_RS21460 at 4426.253 kb on - strand, within ABID97_RS21460 at 4426.309 kb on + strand, within ABID97_RS21460 at 4426.310 kb on - strand, within ABID97_RS21460
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 4,423,660 + -0.2 4,423,660 + +0.0 4,423,679 - ABID97_RS21450 0.11 +0.3 4,423,679 - ABID97_RS21450 0.11 +0.1 4,423,699 + ABID97_RS21450 0.13 +0.8 4,423,699 + ABID97_RS21450 0.13 -0.4 4,423,742 - ABID97_RS21450 0.18 +0.0 4,424,123 - ABID97_RS21450 0.63 -1.2 4,424,127 - ABID97_RS21450 0.64 +0.6 4,424,127 - ABID97_RS21450 0.64 +0.1 4,424,251 + ABID97_RS21450 0.78 -0.1 4,424,251 + ABID97_RS21450 0.78 +0.4 4,424,252 - ABID97_RS21450 0.78 +0.6 4,424,519 + -0.4 4,424,871 + ABID97_RS21455 0.42 +0.1 4,425,054 + ABID97_RS21455 0.60 -0.1 4,425,055 - ABID97_RS21455 0.60 +0.0 4,425,105 + ABID97_RS21455 0.65 -0.5 4,425,105 + ABID97_RS21455 0.65 +0.2 4,425,240 + ABID97_RS21455 0.78 +0.3 4,425,240 + ABID97_RS21455 0.78 +0.2 4,425,241 - ABID97_RS21455 0.78 +1.2 4,425,241 - ABID97_RS21455 0.78 +0.0 4,425,403 - +0.2 4,425,718 + ABID97_RS21460 0.18 +0.3 4,425,718 + ABID97_RS21460 0.18 -0.4 4,425,719 - ABID97_RS21460 0.18 -0.0 4,426,246 + ABID97_RS21460 0.57 -0.3 4,426,246 + ABID97_RS21460 0.57 +0.3 4,426,246 + ABID97_RS21460 0.57 -0.4 4,426,246 + ABID97_RS21460 0.57 +0.0 4,426,247 - ABID97_RS21460 0.57 +0.1 4,426,247 - ABID97_RS21460 0.57 +0.2 4,426,247 - ABID97_RS21460 0.57 +0.1 4,426,247 - ABID97_RS21460 0.57 +0.4 4,426,252 + ABID97_RS21460 0.58 +0.1 4,426,253 - ABID97_RS21460 0.58 +0.5 4,426,309 + ABID97_RS21460 0.62 +0.0 4,426,310 - ABID97_RS21460 0.62 +0.8
Or see this region's nucleotide sequence