Strain Fitness in Variovorax sp. OAS795 around ABID97_RS20590

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS20585 and ABID97_RS20590 are separated by 75 nucleotidesABID97_RS20590 and ABID97_RS20595 are separated by 21 nucleotidesABID97_RS20595 and ABID97_RS20600 are separated by 9 nucleotides ABID97_RS20585: ABID97_RS20585 - bifunctional protein-serine/threonine kinase/phosphatase, at 4,249,716 to 4,251,416 _RS20585 ABID97_RS20590: ABID97_RS20590 - nitrite reductase large subunit NirB, at 4,251,492 to 4,253,936 _RS20590 ABID97_RS20595: ABID97_RS20595 - type IV pili methyl-accepting chemotaxis transducer N-terminal domain-containing protein, at 4,253,958 to 4,254,737 _RS20595 ABID97_RS20600: ABID97_RS20600 - nitrite reductase small subunit NirD, at 4,254,747 to 4,255,172 _RS20600 Position (kb) 4251 4252 4253 4254Strain fitness (log2 ratio) -1 0 1at 4251.068 kb on - strand, within ABID97_RS20585

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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4,251,068 - ABID97_RS20585 0.79 -1.5

Or see this region's nucleotide sequence