Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS14425 and ABID97_RS14430 are separated by 58 nucleotides ABID97_RS14430 and ABID97_RS14435 are separated by 4 nucleotides ABID97_RS14435 and ABID97_RS14440 are separated by 31 nucleotides
ABID97_RS14425: ABID97_RS14425 - SDR family oxidoreductase, at 2,995,867 to 2,996,769
_RS14425
ABID97_RS14430: ABID97_RS14430 - glutathione S-transferase, at 2,996,828 to 2,997,436
_RS14430
ABID97_RS14435: ABID97_RS14435 - DUF488 family protein, at 2,997,441 to 2,997,830
_RS14435
ABID97_RS14440: ABID97_RS14440 - PhoX family phosphatase, at 2,997,862 to 2,999,715
_RS14440
Position (kb)
2997
2998 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2996.680 kb on + strand at 2996.680 kb on + strand at 2996.681 kb on - strand at 2996.859 kb on - strand at 2996.859 kb on - strand at 2997.032 kb on + strand, within ABID97_RS14430 at 2997.228 kb on - strand, within ABID97_RS14430 at 2997.610 kb on + strand, within ABID97_RS14435 at 2997.611 kb on - strand, within ABID97_RS14435 at 2997.611 kb on - strand, within ABID97_RS14435 at 2997.611 kb on - strand, within ABID97_RS14435 at 2997.611 kb on - strand, within ABID97_RS14435 at 2997.611 kb on - strand, within ABID97_RS14435 at 2997.611 kb on - strand, within ABID97_RS14435 at 2997.710 kb on - strand, within ABID97_RS14435 at 2998.143 kb on - strand, within ABID97_RS14440 at 2998.143 kb on - strand, within ABID97_RS14440 at 2998.143 kb on - strand, within ABID97_RS14440 at 2998.454 kb on + strand, within ABID97_RS14440 at 2998.454 kb on + strand, within ABID97_RS14440 at 2998.454 kb on + strand, within ABID97_RS14440 at 2998.455 kb on - strand, within ABID97_RS14440 at 2998.733 kb on + strand, within ABID97_RS14440 at 2998.733 kb on + strand, within ABID97_RS14440 at 2998.734 kb on - strand, within ABID97_RS14440 at 2998.734 kb on - strand, within ABID97_RS14440 at 2998.734 kb on - strand, within ABID97_RS14440 at 2998.734 kb on - strand, within ABID97_RS14440 at 2998.734 kb on - strand, within ABID97_RS14440 at 2998.740 kb on - strand, within ABID97_RS14440 at 2998.766 kb on + strand, within ABID97_RS14440 at 2998.766 kb on + strand, within ABID97_RS14440 at 2998.766 kb on + strand, within ABID97_RS14440 at 2998.767 kb on - strand, within ABID97_RS14440 at 2998.767 kb on - strand, within ABID97_RS14440 at 2998.767 kb on - strand, within ABID97_RS14440 at 2998.767 kb on - strand, within ABID97_RS14440 at 2998.767 kb on - strand, within ABID97_RS14440
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 2,996,680 + +0.4 2,996,680 + +0.4 2,996,681 - +0.2 2,996,859 - -0.0 2,996,859 - -0.5 2,997,032 + ABID97_RS14430 0.33 -0.5 2,997,228 - ABID97_RS14430 0.66 -0.0 2,997,610 + ABID97_RS14435 0.43 -0.3 2,997,611 - ABID97_RS14435 0.44 +0.4 2,997,611 - ABID97_RS14435 0.44 -0.0 2,997,611 - ABID97_RS14435 0.44 +0.2 2,997,611 - ABID97_RS14435 0.44 +0.3 2,997,611 - ABID97_RS14435 0.44 +1.6 2,997,611 - ABID97_RS14435 0.44 -0.2 2,997,710 - ABID97_RS14435 0.69 +0.0 2,998,143 - ABID97_RS14440 0.15 -0.1 2,998,143 - ABID97_RS14440 0.15 +0.4 2,998,143 - ABID97_RS14440 0.15 -0.1 2,998,454 + ABID97_RS14440 0.32 +0.0 2,998,454 + ABID97_RS14440 0.32 +0.3 2,998,454 + ABID97_RS14440 0.32 +0.1 2,998,455 - ABID97_RS14440 0.32 +0.3 2,998,733 + ABID97_RS14440 0.47 -0.4 2,998,733 + ABID97_RS14440 0.47 -0.4 2,998,734 - ABID97_RS14440 0.47 -0.1 2,998,734 - ABID97_RS14440 0.47 -1.6 2,998,734 - ABID97_RS14440 0.47 -1.1 2,998,734 - ABID97_RS14440 0.47 +0.1 2,998,734 - ABID97_RS14440 0.47 +1.0 2,998,740 - ABID97_RS14440 0.47 -1.0 2,998,766 + ABID97_RS14440 0.49 +2.8 2,998,766 + ABID97_RS14440 0.49 +0.2 2,998,766 + ABID97_RS14440 0.49 +0.1 2,998,767 - ABID97_RS14440 0.49 -0.1 2,998,767 - ABID97_RS14440 0.49 +1.4 2,998,767 - ABID97_RS14440 0.49 +0.2 2,998,767 - ABID97_RS14440 0.49 +0.0 2,998,767 - ABID97_RS14440 0.49 +0.1
Or see this region's nucleotide sequence