Strain Fitness in Variovorax sp. OAS795 around ABID97_RS14435

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS14425 and ABID97_RS14430 are separated by 58 nucleotidesABID97_RS14430 and ABID97_RS14435 are separated by 4 nucleotidesABID97_RS14435 and ABID97_RS14440 are separated by 31 nucleotides ABID97_RS14425: ABID97_RS14425 - SDR family oxidoreductase, at 2,995,867 to 2,996,769 _RS14425 ABID97_RS14430: ABID97_RS14430 - glutathione S-transferase, at 2,996,828 to 2,997,436 _RS14430 ABID97_RS14435: ABID97_RS14435 - DUF488 family protein, at 2,997,441 to 2,997,830 _RS14435 ABID97_RS14440: ABID97_RS14440 - PhoX family phosphatase, at 2,997,862 to 2,999,715 _RS14440 Position (kb) 2997 2998Strain fitness (log2 ratio) -1 0 1 2 3at 2996.680 kb on + strandat 2996.680 kb on + strandat 2996.681 kb on - strandat 2996.859 kb on - strandat 2996.859 kb on - strandat 2997.032 kb on + strand, within ABID97_RS14430at 2997.228 kb on - strand, within ABID97_RS14430at 2997.610 kb on + strand, within ABID97_RS14435at 2997.611 kb on - strand, within ABID97_RS14435at 2997.611 kb on - strand, within ABID97_RS14435at 2997.611 kb on - strand, within ABID97_RS14435at 2997.611 kb on - strand, within ABID97_RS14435at 2997.611 kb on - strand, within ABID97_RS14435at 2997.611 kb on - strand, within ABID97_RS14435at 2997.710 kb on - strand, within ABID97_RS14435at 2998.143 kb on - strand, within ABID97_RS14440at 2998.143 kb on - strand, within ABID97_RS14440at 2998.143 kb on - strand, within ABID97_RS14440at 2998.454 kb on + strand, within ABID97_RS14440at 2998.454 kb on + strand, within ABID97_RS14440at 2998.454 kb on + strand, within ABID97_RS14440at 2998.455 kb on - strand, within ABID97_RS14440at 2998.733 kb on + strand, within ABID97_RS14440at 2998.733 kb on + strand, within ABID97_RS14440at 2998.734 kb on - strand, within ABID97_RS14440at 2998.734 kb on - strand, within ABID97_RS14440at 2998.734 kb on - strand, within ABID97_RS14440at 2998.734 kb on - strand, within ABID97_RS14440at 2998.734 kb on - strand, within ABID97_RS14440at 2998.740 kb on - strand, within ABID97_RS14440at 2998.766 kb on + strand, within ABID97_RS14440at 2998.766 kb on + strand, within ABID97_RS14440at 2998.766 kb on + strand, within ABID97_RS14440at 2998.767 kb on - strand, within ABID97_RS14440at 2998.767 kb on - strand, within ABID97_RS14440at 2998.767 kb on - strand, within ABID97_RS14440at 2998.767 kb on - strand, within ABID97_RS14440at 2998.767 kb on - strand, within ABID97_RS14440

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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2,996,680 + +0.4
2,996,680 + +0.4
2,996,681 - +0.2
2,996,859 - -0.0
2,996,859 - -0.5
2,997,032 + ABID97_RS14430 0.33 -0.5
2,997,228 - ABID97_RS14430 0.66 -0.0
2,997,610 + ABID97_RS14435 0.43 -0.3
2,997,611 - ABID97_RS14435 0.44 +0.4
2,997,611 - ABID97_RS14435 0.44 -0.0
2,997,611 - ABID97_RS14435 0.44 +0.2
2,997,611 - ABID97_RS14435 0.44 +0.3
2,997,611 - ABID97_RS14435 0.44 +1.6
2,997,611 - ABID97_RS14435 0.44 -0.2
2,997,710 - ABID97_RS14435 0.69 +0.0
2,998,143 - ABID97_RS14440 0.15 -0.1
2,998,143 - ABID97_RS14440 0.15 +0.4
2,998,143 - ABID97_RS14440 0.15 -0.1
2,998,454 + ABID97_RS14440 0.32 +0.0
2,998,454 + ABID97_RS14440 0.32 +0.3
2,998,454 + ABID97_RS14440 0.32 +0.1
2,998,455 - ABID97_RS14440 0.32 +0.3
2,998,733 + ABID97_RS14440 0.47 -0.4
2,998,733 + ABID97_RS14440 0.47 -0.4
2,998,734 - ABID97_RS14440 0.47 -0.1
2,998,734 - ABID97_RS14440 0.47 -1.6
2,998,734 - ABID97_RS14440 0.47 -1.1
2,998,734 - ABID97_RS14440 0.47 +0.1
2,998,734 - ABID97_RS14440 0.47 +1.0
2,998,740 - ABID97_RS14440 0.47 -1.0
2,998,766 + ABID97_RS14440 0.49 +2.8
2,998,766 + ABID97_RS14440 0.49 +0.2
2,998,766 + ABID97_RS14440 0.49 +0.1
2,998,767 - ABID97_RS14440 0.49 -0.1
2,998,767 - ABID97_RS14440 0.49 +1.4
2,998,767 - ABID97_RS14440 0.49 +0.2
2,998,767 - ABID97_RS14440 0.49 +0.0
2,998,767 - ABID97_RS14440 0.49 +0.1

Or see this region's nucleotide sequence