Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS14415 and ABID97_RS14420 are separated by 3 nucleotides ABID97_RS14420 and ABID97_RS14425 are separated by 148 nucleotides
ABID97_RS14415: ABID97_RS14415 - hypothetical protein, at 2,993,916 to 2,994,836
_RS14415
ABID97_RS14420: ABID97_RS14420 - CoA transferase, at 2,994,840 to 2,995,718
_RS14420
ABID97_RS14425: ABID97_RS14425 - SDR family oxidoreductase, at 2,995,867 to 2,996,769
_RS14425
Position (kb)
2994
2995
2996 Strain fitness (log2 ratio)
-2
-1
0
1 at 2993.902 kb on + strand at 2993.903 kb on - strand at 2993.903 kb on - strand at 2993.903 kb on - strand at 2993.903 kb on - strand at 2994.388 kb on - strand, within ABID97_RS14415 at 2994.439 kb on - strand, within ABID97_RS14415 at 2994.439 kb on - strand, within ABID97_RS14415 at 2994.504 kb on + strand, within ABID97_RS14415 at 2994.504 kb on + strand, within ABID97_RS14415 at 2994.504 kb on + strand, within ABID97_RS14415 at 2994.505 kb on - strand, within ABID97_RS14415 at 2994.505 kb on - strand, within ABID97_RS14415 at 2994.505 kb on - strand, within ABID97_RS14415 at 2994.505 kb on - strand, within ABID97_RS14415 at 2994.505 kb on - strand, within ABID97_RS14415 at 2994.544 kb on - strand, within ABID97_RS14415 at 2994.616 kb on - strand, within ABID97_RS14415 at 2994.616 kb on - strand, within ABID97_RS14415 at 2994.660 kb on + strand, within ABID97_RS14415 at 2994.660 kb on + strand, within ABID97_RS14415 at 2994.660 kb on + strand, within ABID97_RS14415 at 2995.057 kb on + strand, within ABID97_RS14420 at 2995.250 kb on - strand, within ABID97_RS14420 at 2995.300 kb on + strand, within ABID97_RS14420 at 2995.300 kb on + strand, within ABID97_RS14420 at 2995.300 kb on + strand, within ABID97_RS14420 at 2995.301 kb on - strand, within ABID97_RS14420 at 2995.558 kb on + strand, within ABID97_RS14420 at 2995.559 kb on - strand, within ABID97_RS14420 at 2995.559 kb on - strand, within ABID97_RS14420 at 2995.559 kb on - strand, within ABID97_RS14420 at 2995.804 kb on + strand at 2996.236 kb on + strand, within ABID97_RS14425 at 2996.237 kb on - strand, within ABID97_RS14425 at 2996.680 kb on + strand at 2996.680 kb on + strand at 2996.681 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 2,993,902 + -0.8 2,993,903 - -0.4 2,993,903 - -1.0 2,993,903 - -0.0 2,993,903 - +0.3 2,994,388 - ABID97_RS14415 0.51 +0.4 2,994,439 - ABID97_RS14415 0.57 +0.3 2,994,439 - ABID97_RS14415 0.57 +0.1 2,994,504 + ABID97_RS14415 0.64 -0.4 2,994,504 + ABID97_RS14415 0.64 -0.1 2,994,504 + ABID97_RS14415 0.64 -0.2 2,994,505 - ABID97_RS14415 0.64 +0.0 2,994,505 - ABID97_RS14415 0.64 +0.3 2,994,505 - ABID97_RS14415 0.64 -0.3 2,994,505 - ABID97_RS14415 0.64 +1.0 2,994,505 - ABID97_RS14415 0.64 -2.0 2,994,544 - ABID97_RS14415 0.68 +0.2 2,994,616 - ABID97_RS14415 0.76 -0.0 2,994,616 - ABID97_RS14415 0.76 +0.1 2,994,660 + ABID97_RS14415 0.81 -0.3 2,994,660 + ABID97_RS14415 0.81 +0.1 2,994,660 + ABID97_RS14415 0.81 +0.7 2,995,057 + ABID97_RS14420 0.25 +0.4 2,995,250 - ABID97_RS14420 0.47 -0.1 2,995,300 + ABID97_RS14420 0.52 +0.0 2,995,300 + ABID97_RS14420 0.52 -0.1 2,995,300 + ABID97_RS14420 0.52 -0.1 2,995,301 - ABID97_RS14420 0.52 +0.2 2,995,558 + ABID97_RS14420 0.82 +0.1 2,995,559 - ABID97_RS14420 0.82 +0.8 2,995,559 - ABID97_RS14420 0.82 -0.1 2,995,559 - ABID97_RS14420 0.82 +0.6 2,995,804 + -0.5 2,996,236 + ABID97_RS14425 0.41 +0.2 2,996,237 - ABID97_RS14425 0.41 -0.5 2,996,680 + +0.4 2,996,680 + +0.4 2,996,681 - +0.2
Or see this region's nucleotide sequence