Strain Fitness in Variovorax sp. OAS795 around ABID97_RS14420

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS14415 and ABID97_RS14420 are separated by 3 nucleotidesABID97_RS14420 and ABID97_RS14425 are separated by 148 nucleotides ABID97_RS14415: ABID97_RS14415 - hypothetical protein, at 2,993,916 to 2,994,836 _RS14415 ABID97_RS14420: ABID97_RS14420 - CoA transferase, at 2,994,840 to 2,995,718 _RS14420 ABID97_RS14425: ABID97_RS14425 - SDR family oxidoreductase, at 2,995,867 to 2,996,769 _RS14425 Position (kb) 2994 2995 2996Strain fitness (log2 ratio) -2 -1 0 1at 2993.902 kb on + strandat 2993.903 kb on - strandat 2993.903 kb on - strandat 2993.903 kb on - strandat 2993.903 kb on - strandat 2994.388 kb on - strand, within ABID97_RS14415at 2994.439 kb on - strand, within ABID97_RS14415at 2994.439 kb on - strand, within ABID97_RS14415at 2994.504 kb on + strand, within ABID97_RS14415at 2994.504 kb on + strand, within ABID97_RS14415at 2994.504 kb on + strand, within ABID97_RS14415at 2994.505 kb on - strand, within ABID97_RS14415at 2994.505 kb on - strand, within ABID97_RS14415at 2994.505 kb on - strand, within ABID97_RS14415at 2994.505 kb on - strand, within ABID97_RS14415at 2994.505 kb on - strand, within ABID97_RS14415at 2994.544 kb on - strand, within ABID97_RS14415at 2994.616 kb on - strand, within ABID97_RS14415at 2994.616 kb on - strand, within ABID97_RS14415at 2994.660 kb on + strand, within ABID97_RS14415at 2994.660 kb on + strand, within ABID97_RS14415at 2994.660 kb on + strand, within ABID97_RS14415at 2995.057 kb on + strand, within ABID97_RS14420at 2995.250 kb on - strand, within ABID97_RS14420at 2995.300 kb on + strand, within ABID97_RS14420at 2995.300 kb on + strand, within ABID97_RS14420at 2995.300 kb on + strand, within ABID97_RS14420at 2995.301 kb on - strand, within ABID97_RS14420at 2995.558 kb on + strand, within ABID97_RS14420at 2995.559 kb on - strand, within ABID97_RS14420at 2995.559 kb on - strand, within ABID97_RS14420at 2995.559 kb on - strand, within ABID97_RS14420at 2995.804 kb on + strandat 2996.236 kb on + strand, within ABID97_RS14425at 2996.237 kb on - strand, within ABID97_RS14425at 2996.680 kb on + strandat 2996.680 kb on + strandat 2996.681 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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2,993,902 + -0.8
2,993,903 - -0.4
2,993,903 - -1.0
2,993,903 - -0.0
2,993,903 - +0.3
2,994,388 - ABID97_RS14415 0.51 +0.4
2,994,439 - ABID97_RS14415 0.57 +0.3
2,994,439 - ABID97_RS14415 0.57 +0.1
2,994,504 + ABID97_RS14415 0.64 -0.4
2,994,504 + ABID97_RS14415 0.64 -0.1
2,994,504 + ABID97_RS14415 0.64 -0.2
2,994,505 - ABID97_RS14415 0.64 +0.0
2,994,505 - ABID97_RS14415 0.64 +0.3
2,994,505 - ABID97_RS14415 0.64 -0.3
2,994,505 - ABID97_RS14415 0.64 +1.0
2,994,505 - ABID97_RS14415 0.64 -2.0
2,994,544 - ABID97_RS14415 0.68 +0.2
2,994,616 - ABID97_RS14415 0.76 -0.0
2,994,616 - ABID97_RS14415 0.76 +0.1
2,994,660 + ABID97_RS14415 0.81 -0.3
2,994,660 + ABID97_RS14415 0.81 +0.1
2,994,660 + ABID97_RS14415 0.81 +0.7
2,995,057 + ABID97_RS14420 0.25 +0.4
2,995,250 - ABID97_RS14420 0.47 -0.1
2,995,300 + ABID97_RS14420 0.52 +0.0
2,995,300 + ABID97_RS14420 0.52 -0.1
2,995,300 + ABID97_RS14420 0.52 -0.1
2,995,301 - ABID97_RS14420 0.52 +0.2
2,995,558 + ABID97_RS14420 0.82 +0.1
2,995,559 - ABID97_RS14420 0.82 +0.8
2,995,559 - ABID97_RS14420 0.82 -0.1
2,995,559 - ABID97_RS14420 0.82 +0.6
2,995,804 + -0.5
2,996,236 + ABID97_RS14425 0.41 +0.2
2,996,237 - ABID97_RS14425 0.41 -0.5
2,996,680 + +0.4
2,996,680 + +0.4
2,996,681 - +0.2

Or see this region's nucleotide sequence