Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS11755 and ABID97_RS11760 are separated by 5 nucleotides ABID97_RS11760 and ABID97_RS11765 are separated by 230 nucleotides ABID97_RS11765 and ABID97_RS11770 overlap by 4 nucleotides
ABID97_RS11755: ABID97_RS11755 - dihydrofolate reductase family protein, at 2,429,934 to 2,430,590
_RS11755
ABID97_RS11760: ABID97_RS11760 - hypothetical protein, at 2,430,596 to 2,430,871
_RS11760
ABID97_RS11765: ABID97_RS11765 - four-carbon acid sugar kinase family protein, at 2,431,102 to 2,432,436
_RS11765
ABID97_RS11770: ABID97_RS11770 - ribulose-bisphosphate carboxylase large subunit family protein, at 2,432,433 to 2,433,704
_RS11770
Position (kb)
2431
2432
2433 Strain fitness (log2 ratio)
-1
0
1
2 at 2430.564 kb on - strand at 2430.564 kb on - strand at 2430.710 kb on + strand, within ABID97_RS11760 at 2430.948 kb on - strand at 2431.645 kb on - strand, within ABID97_RS11765 at 2432.178 kb on - strand, within ABID97_RS11765 at 2432.409 kb on - strand at 2432.411 kb on + strand at 2433.002 kb on + strand, within ABID97_RS11770 at 2433.374 kb on - strand, within ABID97_RS11770
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 2,430,564 - +1.3 2,430,564 - -0.8 2,430,710 + ABID97_RS11760 0.41 +0.4 2,430,948 - +0.9 2,431,645 - ABID97_RS11765 0.41 -0.4 2,432,178 - ABID97_RS11765 0.81 -0.7 2,432,409 - +1.9 2,432,411 + +0.4 2,433,002 + ABID97_RS11770 0.45 +0.3 2,433,374 - ABID97_RS11770 0.74 +0.5
Or see this region's nucleotide sequence