Strain Fitness in Variovorax sp. OAS795 around ABID97_RS06305

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS06295 and ABID97_RS06300 overlap by 4 nucleotidesABID97_RS06300 and ABID97_RS06305 are separated by 28 nucleotidesABID97_RS06305 and ABID97_RS06310 overlap by 4 nucleotides ABID97_RS06295: ABID97_RS06295 - monofunctional biosynthetic peptidoglycan transglycosylase, at 1,328,438 to 1,329,181 _RS06295 ABID97_RS06300: ABID97_RS06300 - shikimate dehydrogenase, at 1,329,178 to 1,330,035 _RS06300 ABID97_RS06305: ABID97_RS06305 - TonB family protein, at 1,330,064 to 1,330,915 _RS06305 ABID97_RS06310: ABID97_RS06310 - RNB domain-containing ribonuclease, at 1,330,912 to 1,332,973 _RS06310 Position (kb) 1330 1331Strain fitness (log2 ratio) -1 0 1at 1330.065 kb on + strandat 1330.066 kb on - strandat 1330.066 kb on - strandat 1330.066 kb on - strandat 1330.296 kb on + strand, within ABID97_RS06305at 1330.371 kb on + strand, within ABID97_RS06305at 1330.371 kb on + strand, within ABID97_RS06305at 1330.371 kb on + strand, within ABID97_RS06305at 1330.371 kb on + strand, within ABID97_RS06305at 1330.371 kb on + strand, within ABID97_RS06305at 1330.372 kb on - strand, within ABID97_RS06305at 1330.372 kb on - strand, within ABID97_RS06305at 1330.372 kb on - strand, within ABID97_RS06305at 1330.372 kb on - strand, within ABID97_RS06305at 1330.372 kb on - strand, within ABID97_RS06305at 1330.372 kb on - strand, within ABID97_RS06305at 1330.372 kb on - strand, within ABID97_RS06305at 1330.380 kb on + strand, within ABID97_RS06305at 1330.381 kb on - strand, within ABID97_RS06305at 1330.381 kb on - strand, within ABID97_RS06305at 1330.410 kb on + strand, within ABID97_RS06305at 1330.411 kb on - strand, within ABID97_RS06305

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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1,330,065 + -1.0
1,330,066 - -0.5
1,330,066 - -0.5
1,330,066 - -0.1
1,330,296 + ABID97_RS06305 0.27 +0.7
1,330,371 + ABID97_RS06305 0.36 +1.1
1,330,371 + ABID97_RS06305 0.36 +0.5
1,330,371 + ABID97_RS06305 0.36 +1.4
1,330,371 + ABID97_RS06305 0.36 +1.1
1,330,371 + ABID97_RS06305 0.36 +0.6
1,330,372 - ABID97_RS06305 0.36 +0.7
1,330,372 - ABID97_RS06305 0.36 +0.3
1,330,372 - ABID97_RS06305 0.36 +0.4
1,330,372 - ABID97_RS06305 0.36 +0.3
1,330,372 - ABID97_RS06305 0.36 +0.2
1,330,372 - ABID97_RS06305 0.36 +0.3
1,330,372 - ABID97_RS06305 0.36 +0.7
1,330,380 + ABID97_RS06305 0.37 +0.6
1,330,381 - ABID97_RS06305 0.37 +0.4
1,330,381 - ABID97_RS06305 0.37 +0.7
1,330,410 + ABID97_RS06305 0.41 +1.0
1,330,411 - ABID97_RS06305 0.41 +0.9

Or see this region's nucleotide sequence