Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_856 and PfGW456L13_857 overlap by 4 nucleotides PfGW456L13_857 and PfGW456L13_858 are separated by 16 nucleotides PfGW456L13_858 and PfGW456L13_859 overlap by 4 nucleotides
PfGW456L13_856 - Porphobilinogen deaminase (EC 2.5.1.61), at 962,571 to 963,512
_856
PfGW456L13_857 - Uroporphyrinogen-III synthase (EC 4.2.1.75), at 963,509 to 964,276
_857
PfGW456L13_858 - Uroporphyrinogen-III synthase (EC 4.2.1.75), at 964,293 to 965,456
_858
PfGW456L13_859 - Uncharacterized protein EC-HemY, likely associated with heme metabolism based on gene clustering with hemC, hemD in Proteobacteria (unrelated to HemY-type PPO in GramPositives), at 965,453 to 966,691
_859
Position (kb) 964
965
966 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 963.489 kb on + strand at 963.489 kb on + strand at 963.489 kb on + strand at 963.490 kb on - strand at 963.490 kb on - strand at 963.490 kb on - strand at 963.490 kb on - strand at 964.274 kb on + strand at 964.290 kb on + strand at 964.290 kb on + strand at 964.290 kb on + strand at 964.290 kb on + strand at 964.290 kb on + strand at 964.290 kb on + strand at 964.290 kb on + strand at 964.290 kb on + strand at 964.291 kb on - strand at 964.291 kb on - strand at 964.313 kb on + strand at 964.313 kb on + strand at 964.451 kb on - strand, within PfGW456L13_858 at 964.499 kb on + strand, within PfGW456L13_858 at 964.642 kb on + strand, within PfGW456L13_858 at 964.643 kb on - strand, within PfGW456L13_858 at 964.643 kb on - strand, within PfGW456L13_858 at 964.813 kb on + strand, within PfGW456L13_858 at 964.977 kb on + strand, within PfGW456L13_858 at 964.977 kb on + strand, within PfGW456L13_858 at 964.977 kb on + strand, within PfGW456L13_858 at 964.978 kb on - strand, within PfGW456L13_858 at 964.978 kb on - strand, within PfGW456L13_858 at 964.978 kb on - strand, within PfGW456L13_858 at 965.068 kb on - strand, within PfGW456L13_858 at 965.206 kb on - strand, within PfGW456L13_858 at 965.465 kb on + strand at 965.465 kb on + strand at 965.465 kb on + strand at 965.466 kb on - strand at 965.466 kb on - strand at 965.466 kb on - strand at 965.549 kb on + strand at 965.550 kb on - strand at 965.584 kb on + strand, within PfGW456L13_859 at 965.585 kb on - strand, within PfGW456L13_859 at 965.813 kb on + strand, within PfGW456L13_859 at 965.814 kb on - strand, within PfGW456L13_859 at 965.814 kb on - strand, within PfGW456L13_859 at 965.816 kb on + strand, within PfGW456L13_859 at 965.817 kb on - strand, within PfGW456L13_859 at 965.817 kb on - strand, within PfGW456L13_859 at 966.275 kb on + strand, within PfGW456L13_859 at 966.276 kb on - strand, within PfGW456L13_859 at 966.276 kb on - strand, within PfGW456L13_859 at 966.350 kb on + strand, within PfGW456L13_859 at 966.350 kb on + strand, within PfGW456L13_859 at 966.374 kb on + strand, within PfGW456L13_859 at 966.374 kb on + strand, within PfGW456L13_859
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 963,489 + -0.0 963,489 + -1.4 963,489 + -1.8 963,490 - +1.6 963,490 - -2.5 963,490 - +1.5 963,490 - -2.2 964,274 + +0.8 964,290 + +1.4 964,290 + +1.4 964,290 + +1.6 964,290 + +0.7 964,290 + +1.9 964,290 + -2.8 964,290 + -3.0 964,290 + +1.6 964,291 - -1.1 964,291 - +0.6 964,313 + -0.9 964,313 + -0.1 964,451 - PfGW456L13_858 0.14 -1.8 964,499 + PfGW456L13_858 0.18 -1.5 964,642 + PfGW456L13_858 0.30 -2.5 964,643 - PfGW456L13_858 0.30 -2.3 964,643 - PfGW456L13_858 0.30 -0.9 964,813 + PfGW456L13_858 0.45 +0.5 964,977 + PfGW456L13_858 0.59 -2.1 964,977 + PfGW456L13_858 0.59 -0.1 964,977 + PfGW456L13_858 0.59 -0.3 964,978 - PfGW456L13_858 0.59 -1.7 964,978 - PfGW456L13_858 0.59 +1.0 964,978 - PfGW456L13_858 0.59 +0.1 965,068 - PfGW456L13_858 0.67 +0.1 965,206 - PfGW456L13_858 0.78 +0.6 965,465 + -0.5 965,465 + -2.0 965,465 + +1.0 965,466 - +1.9 965,466 - -2.8 965,466 - +2.1 965,549 + -0.4 965,550 - -1.7 965,584 + PfGW456L13_859 0.11 +0.5 965,585 - PfGW456L13_859 0.11 -0.0 965,813 + PfGW456L13_859 0.29 +1.1 965,814 - PfGW456L13_859 0.29 +0.9 965,814 - PfGW456L13_859 0.29 -1.5 965,816 + PfGW456L13_859 0.29 -2.5 965,817 - PfGW456L13_859 0.29 +0.4 965,817 - PfGW456L13_859 0.29 +1.5 966,275 + PfGW456L13_859 0.66 +0.1 966,276 - PfGW456L13_859 0.66 +1.1 966,276 - PfGW456L13_859 0.66 +0.9 966,350 + PfGW456L13_859 0.72 -0.3 966,350 + PfGW456L13_859 0.72 +1.5 966,374 + PfGW456L13_859 0.74 +0.6 966,374 + PfGW456L13_859 0.74 -0.3
Or see this region's nucleotide sequence