Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_5073

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_5072 and PfGW456L13_5073 are separated by 176 nucleotidesPfGW456L13_5073 and PfGW456L13_5074 are separated by 11 nucleotidesPfGW456L13_5074 and PfGW456L13_5075 overlap by 1 nucleotides PfGW456L13_5072 - Phosphodiesterase/alkaline phosphatase D, at 5,656,066 to 5,657,607 _5072 PfGW456L13_5073 - PTS system, fructose-specific IIB component (EC 2.7.1.69) / PTS system, fructose-specific IIC component (EC 2.7.1.69), at 5,657,784 to 5,659,523 _5073 PfGW456L13_5074 - 1-phosphofructokinase (EC 2.7.1.56), at 5,659,535 to 5,660,473 _5074 PfGW456L13_5075 - Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9), at 5,660,473 to 5,663,334 _5075 Position (kb) 5657 5658 5659 5660Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5656.809 kb on + strand, within PfGW456L13_5072at 5656.810 kb on - strand, within PfGW456L13_5072at 5656.940 kb on + strand, within PfGW456L13_5072at 5656.941 kb on - strand, within PfGW456L13_5072at 5656.941 kb on - strand, within PfGW456L13_5072at 5656.946 kb on + strand, within PfGW456L13_5072at 5656.947 kb on - strand, within PfGW456L13_5072at 5657.063 kb on + strand, within PfGW456L13_5072at 5657.063 kb on + strand, within PfGW456L13_5072at 5657.064 kb on - strand, within PfGW456L13_5072at 5657.064 kb on - strand, within PfGW456L13_5072at 5657.120 kb on + strand, within PfGW456L13_5072at 5657.120 kb on + strand, within PfGW456L13_5072at 5657.120 kb on + strand, within PfGW456L13_5072at 5657.120 kb on + strand, within PfGW456L13_5072at 5657.121 kb on - strandat 5657.121 kb on - strand, within PfGW456L13_5072at 5657.121 kb on - strand, within PfGW456L13_5072at 5657.482 kb on + strandat 5657.483 kb on - strandat 5657.483 kb on - strandat 5657.634 kb on + strandat 5657.676 kb on + strandat 5657.676 kb on + strandat 5657.677 kb on - strandat 5657.771 kb on - strandat 5657.771 kb on - strandat 5657.843 kb on - strandat 5657.843 kb on - strandat 5657.887 kb on + strandat 5657.887 kb on + strandat 5657.887 kb on + strandat 5657.887 kb on + strandat 5657.888 kb on - strandat 5657.888 kb on - strandat 5657.968 kb on + strand, within PfGW456L13_5073at 5657.968 kb on + strand, within PfGW456L13_5073at 5657.968 kb on + strand, within PfGW456L13_5073at 5657.968 kb on + strand, within PfGW456L13_5073at 5658.065 kb on + strand, within PfGW456L13_5073at 5658.065 kb on + strand, within PfGW456L13_5073at 5658.066 kb on - strand, within PfGW456L13_5073at 5658.066 kb on - strand, within PfGW456L13_5073at 5658.205 kb on + strand, within PfGW456L13_5073at 5658.205 kb on + strand, within PfGW456L13_5073at 5658.205 kb on + strand, within PfGW456L13_5073at 5658.206 kb on - strand, within PfGW456L13_5073at 5658.206 kb on - strand, within PfGW456L13_5073at 5658.206 kb on - strand, within PfGW456L13_5073at 5658.242 kb on - strand, within PfGW456L13_5073at 5658.388 kb on + strand, within PfGW456L13_5073at 5658.388 kb on + strand, within PfGW456L13_5073at 5658.388 kb on + strand, within PfGW456L13_5073at 5658.388 kb on + strand, within PfGW456L13_5073at 5658.388 kb on + strand, within PfGW456L13_5073at 5658.388 kb on + strand, within PfGW456L13_5073at 5658.388 kb on + strand, within PfGW456L13_5073at 5658.388 kb on + strand, within PfGW456L13_5073at 5658.388 kb on + strand, within PfGW456L13_5073at 5658.388 kb on + strand, within PfGW456L13_5073at 5658.388 kb on + strand, within PfGW456L13_5073at 5658.388 kb on + strand, within PfGW456L13_5073at 5658.388 kb on + strand, within PfGW456L13_5073at 5658.388 kb on + strand, within PfGW456L13_5073at 5658.388 kb on + strand, within PfGW456L13_5073at 5658.389 kb on - strand, within PfGW456L13_5073at 5658.389 kb on - strand, within PfGW456L13_5073at 5658.389 kb on - strand, within PfGW456L13_5073at 5658.389 kb on - strand, within PfGW456L13_5073at 5658.389 kb on - strand, within PfGW456L13_5073at 5658.389 kb on - strand, within PfGW456L13_5073at 5658.613 kb on + strand, within PfGW456L13_5073at 5658.614 kb on - strand, within PfGW456L13_5073at 5658.614 kb on - strand, within PfGW456L13_5073at 5658.614 kb on - strand, within PfGW456L13_5073at 5658.622 kb on + strand, within PfGW456L13_5073at 5658.622 kb on + strand, within PfGW456L13_5073at 5658.622 kb on + strand, within PfGW456L13_5073at 5658.622 kb on + strand, within PfGW456L13_5073at 5658.622 kb on + strand, within PfGW456L13_5073at 5658.622 kb on + strandat 5658.622 kb on + strand, within PfGW456L13_5073at 5658.622 kb on + strand, within PfGW456L13_5073at 5658.623 kb on - strand, within PfGW456L13_5073at 5658.623 kb on - strand, within PfGW456L13_5073at 5658.623 kb on - strand, within PfGW456L13_5073at 5658.623 kb on - strand, within PfGW456L13_5073at 5658.623 kb on - strand, within PfGW456L13_5073at 5658.623 kb on - strand, within PfGW456L13_5073at 5658.623 kb on - strand, within PfGW456L13_5073at 5658.623 kb on - strand, within PfGW456L13_5073at 5658.803 kb on + strand, within PfGW456L13_5073at 5658.804 kb on - strand, within PfGW456L13_5073at 5658.804 kb on - strand, within PfGW456L13_5073at 5658.805 kb on + strand, within PfGW456L13_5073at 5658.805 kb on + strand, within PfGW456L13_5073at 5658.806 kb on - strand, within PfGW456L13_5073at 5658.806 kb on - strand, within PfGW456L13_5073at 5658.806 kb on - strand, within PfGW456L13_5073at 5658.806 kb on - strand, within PfGW456L13_5073at 5658.908 kb on + strand, within PfGW456L13_5073at 5658.909 kb on - strand, within PfGW456L13_5073at 5658.934 kb on + strand, within PfGW456L13_5073at 5658.934 kb on + strand, within PfGW456L13_5073at 5659.073 kb on - strand, within PfGW456L13_5073at 5659.073 kb on - strand, within PfGW456L13_5073at 5659.516 kb on - strandat 5659.516 kb on - strandat 5659.536 kb on + strandat 5659.536 kb on + strandat 5659.536 kb on + strandat 5659.537 kb on - strandat 5659.537 kb on - strandat 5659.537 kb on - strandat 5659.537 kb on - strandat 5660.197 kb on + strand, within PfGW456L13_5074at 5660.458 kb on + strandat 5660.462 kb on + strandat 5660.462 kb on + strandat 5660.462 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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5,656,809 + PfGW456L13_5072 0.48 +1.0
5,656,810 - PfGW456L13_5072 0.48 -2.2
5,656,940 + PfGW456L13_5072 0.57 +0.3
5,656,941 - PfGW456L13_5072 0.57 -0.6
5,656,941 - PfGW456L13_5072 0.57 -1.0
5,656,946 + PfGW456L13_5072 0.57 -0.8
5,656,947 - PfGW456L13_5072 0.57 -0.9
5,657,063 + PfGW456L13_5072 0.65 +0.8
5,657,063 + PfGW456L13_5072 0.65 +1.1
5,657,064 - PfGW456L13_5072 0.65 +0.3
5,657,064 - PfGW456L13_5072 0.65 +1.4
5,657,120 + PfGW456L13_5072 0.68 +1.0
5,657,120 + PfGW456L13_5072 0.68 -0.0
5,657,120 + PfGW456L13_5072 0.68 +1.6
5,657,120 + PfGW456L13_5072 0.68 +0.6
5,657,121 - -0.0
5,657,121 - PfGW456L13_5072 0.68 -0.1
5,657,121 - PfGW456L13_5072 0.68 +0.2
5,657,482 + +0.6
5,657,483 - +2.1
5,657,483 - +0.8
5,657,634 + +1.4
5,657,676 + +1.0
5,657,676 + +0.3
5,657,677 - -0.4
5,657,771 - +1.2
5,657,771 - -0.8
5,657,843 - +1.2
5,657,843 - -0.4
5,657,887 + +0.3
5,657,887 + +0.2
5,657,887 + -2.0
5,657,887 + +1.6
5,657,888 - -0.1
5,657,888 - +0.5
5,657,968 + PfGW456L13_5073 0.11 +0.9
5,657,968 + PfGW456L13_5073 0.11 +0.2
5,657,968 + PfGW456L13_5073 0.11 -0.3
5,657,968 + PfGW456L13_5073 0.11 -0.9
5,658,065 + PfGW456L13_5073 0.16 +0.1
5,658,065 + PfGW456L13_5073 0.16 +1.2
5,658,066 - PfGW456L13_5073 0.16 -1.4
5,658,066 - PfGW456L13_5073 0.16 -0.5
5,658,205 + PfGW456L13_5073 0.24 +0.2
5,658,205 + PfGW456L13_5073 0.24 +0.8
5,658,205 + PfGW456L13_5073 0.24 +0.5
5,658,206 - PfGW456L13_5073 0.24 -0.8
5,658,206 - PfGW456L13_5073 0.24 -0.0
5,658,206 - PfGW456L13_5073 0.24 -1.9
5,658,242 - PfGW456L13_5073 0.26 -0.9
5,658,388 + PfGW456L13_5073 0.35 -0.1
5,658,388 + PfGW456L13_5073 0.35 +0.1
5,658,388 + PfGW456L13_5073 0.35 -1.8
5,658,388 + PfGW456L13_5073 0.35 -3.1
5,658,388 + PfGW456L13_5073 0.35 -1.6
5,658,388 + PfGW456L13_5073 0.35 +0.4
5,658,388 + PfGW456L13_5073 0.35 -1.4
5,658,388 + PfGW456L13_5073 0.35 -1.2
5,658,388 + PfGW456L13_5073 0.35 +0.7
5,658,388 + PfGW456L13_5073 0.35 +0.6
5,658,388 + PfGW456L13_5073 0.35 +1.1
5,658,388 + PfGW456L13_5073 0.35 -0.1
5,658,388 + PfGW456L13_5073 0.35 -2.2
5,658,388 + PfGW456L13_5073 0.35 -0.1
5,658,388 + PfGW456L13_5073 0.35 +2.2
5,658,389 - PfGW456L13_5073 0.35 +0.6
5,658,389 - PfGW456L13_5073 0.35 +1.1
5,658,389 - PfGW456L13_5073 0.35 -0.7
5,658,389 - PfGW456L13_5073 0.35 -0.6
5,658,389 - PfGW456L13_5073 0.35 +1.3
5,658,389 - PfGW456L13_5073 0.35 +1.9
5,658,613 + PfGW456L13_5073 0.48 -0.3
5,658,614 - PfGW456L13_5073 0.48 +1.2
5,658,614 - PfGW456L13_5073 0.48 -3.3
5,658,614 - PfGW456L13_5073 0.48 +0.6
5,658,622 + PfGW456L13_5073 0.48 -1.4
5,658,622 + PfGW456L13_5073 0.48 +0.2
5,658,622 + PfGW456L13_5073 0.48 +2.2
5,658,622 + PfGW456L13_5073 0.48 -0.6
5,658,622 + PfGW456L13_5073 0.48 +1.3
5,658,622 + -1.2
5,658,622 + PfGW456L13_5073 0.48 +2.2
5,658,622 + PfGW456L13_5073 0.48 +0.8
5,658,623 - PfGW456L13_5073 0.48 -0.1
5,658,623 - PfGW456L13_5073 0.48 -0.1
5,658,623 - PfGW456L13_5073 0.48 +0.6
5,658,623 - PfGW456L13_5073 0.48 -2.2
5,658,623 - PfGW456L13_5073 0.48 +0.6
5,658,623 - PfGW456L13_5073 0.48 +1.4
5,658,623 - PfGW456L13_5073 0.48 -3.0
5,658,623 - PfGW456L13_5073 0.48 -0.9
5,658,803 + PfGW456L13_5073 0.59 +1.6
5,658,804 - PfGW456L13_5073 0.59 +0.7
5,658,804 - PfGW456L13_5073 0.59 -0.9
5,658,805 + PfGW456L13_5073 0.59 -1.5
5,658,805 + PfGW456L13_5073 0.59 +1.4
5,658,806 - PfGW456L13_5073 0.59 +0.6
5,658,806 - PfGW456L13_5073 0.59 -0.7
5,658,806 - PfGW456L13_5073 0.59 +1.7
5,658,806 - PfGW456L13_5073 0.59 -2.9
5,658,908 + PfGW456L13_5073 0.65 +0.1
5,658,909 - PfGW456L13_5073 0.65 -0.8
5,658,934 + PfGW456L13_5073 0.66 +0.1
5,658,934 + PfGW456L13_5073 0.66 +0.7
5,659,073 - PfGW456L13_5073 0.74 +0.2
5,659,073 - PfGW456L13_5073 0.74 +0.7
5,659,516 - +0.5
5,659,516 - -3.7
5,659,536 + -1.5
5,659,536 + +0.6
5,659,536 + +1.2
5,659,537 - -1.2
5,659,537 - -1.0
5,659,537 - -0.6
5,659,537 - +0.6
5,660,197 + PfGW456L13_5074 0.71 +0.3
5,660,458 + -0.0
5,660,462 + -0.1
5,660,462 + -0.8
5,660,462 + +0.5

Or see this region's nucleotide sequence