Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_494 and PfGW456L13_495 are separated by 184 nucleotides PfGW456L13_495 and PfGW456L13_5162 are separated by 348 nucleotides
PfGW456L13_494 - 5-aminovalerate aminotransferase (EC 2.6.1.48) / Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19), at 565,490 to 566,767
_494
PfGW456L13_495 - Glutarate-semialdehyde dehydrogenase (EC 1.2.1.20) <small>(from data)</small>, at 566,952 to 568,394
_495
PfGW456L13_5162 - tRNA-Arg-CCG, at 568,743 to 568,816
_5162
Position (kb) 566
567
568
569 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 566.042 kb on + strand, within PfGW456L13_494 at 566.042 kb on + strand, within PfGW456L13_494 at 566.043 kb on - strand, within PfGW456L13_494 at 566.043 kb on - strand, within PfGW456L13_494 at 566.043 kb on - strand, within PfGW456L13_494 at 566.121 kb on + strand, within PfGW456L13_494 at 566.121 kb on + strand, within PfGW456L13_494 at 566.121 kb on + strand, within PfGW456L13_494 at 566.121 kb on + strand, within PfGW456L13_494 at 566.121 kb on + strand, within PfGW456L13_494 at 566.121 kb on + strand, within PfGW456L13_494 at 566.121 kb on + strand, within PfGW456L13_494 at 566.121 kb on + strand, within PfGW456L13_494 at 566.121 kb on + strand, within PfGW456L13_494 at 566.122 kb on - strand, within PfGW456L13_494 at 566.122 kb on - strand, within PfGW456L13_494 at 566.122 kb on - strand, within PfGW456L13_494 at 566.122 kb on - strand, within PfGW456L13_494 at 566.122 kb on - strand, within PfGW456L13_494 at 566.122 kb on - strand, within PfGW456L13_494 at 566.122 kb on - strand, within PfGW456L13_494 at 566.122 kb on - strand, within PfGW456L13_494 at 566.254 kb on - strand, within PfGW456L13_494 at 566.255 kb on + strand, within PfGW456L13_494 at 566.255 kb on + strand, within PfGW456L13_494 at 566.255 kb on + strand, within PfGW456L13_494 at 566.302 kb on - strand, within PfGW456L13_494 at 566.504 kb on + strand, within PfGW456L13_494 at 566.504 kb on + strand, within PfGW456L13_494 at 566.504 kb on + strand, within PfGW456L13_494 at 566.504 kb on + strand, within PfGW456L13_494 at 566.505 kb on - strand, within PfGW456L13_494 at 566.505 kb on - strand, within PfGW456L13_494 at 566.505 kb on - strand, within PfGW456L13_494 at 566.508 kb on + strand, within PfGW456L13_494 at 566.508 kb on + strand, within PfGW456L13_494 at 566.508 kb on + strand, within PfGW456L13_494 at 566.509 kb on - strand, within PfGW456L13_494 at 566.509 kb on - strand, within PfGW456L13_494 at 566.509 kb on - strand, within PfGW456L13_494 at 566.517 kb on + strand, within PfGW456L13_494 at 566.517 kb on + strand, within PfGW456L13_494 at 566.525 kb on + strand, within PfGW456L13_494 at 566.767 kb on + strand at 566.767 kb on + strand at 566.768 kb on + strand at 566.768 kb on - strand at 566.768 kb on - strand at 566.768 kb on - strand at 566.768 kb on - strand at 566.768 kb on - strand at 566.768 kb on - strand at 566.768 kb on - strand at 566.768 kb on - strand at 566.811 kb on - strand at 566.954 kb on - strand at 566.971 kb on + strand at 566.971 kb on + strand at 566.971 kb on + strand at 566.971 kb on + strand at 566.971 kb on + strand at 566.972 kb on - strand at 566.972 kb on - strand at 566.972 kb on - strand at 566.972 kb on - strand at 566.986 kb on + strand at 566.986 kb on + strand at 566.986 kb on + strand at 567.001 kb on + strand at 567.001 kb on + strand at 567.145 kb on + strand, within PfGW456L13_495 at 567.145 kb on + strand, within PfGW456L13_495 at 567.145 kb on + strand, within PfGW456L13_495 at 567.145 kb on + strand, within PfGW456L13_495 at 567.145 kb on + strand, within PfGW456L13_495 at 567.145 kb on + strand, within PfGW456L13_495 at 567.145 kb on + strand, within PfGW456L13_495 at 567.145 kb on + strand, within PfGW456L13_495 at 567.145 kb on + strand, within PfGW456L13_495 at 567.145 kb on + strand, within PfGW456L13_495 at 567.146 kb on - strand, within PfGW456L13_495 at 567.146 kb on - strand, within PfGW456L13_495 at 567.146 kb on - strand, within PfGW456L13_495 at 567.146 kb on - strand, within PfGW456L13_495 at 567.146 kb on - strand, within PfGW456L13_495 at 567.146 kb on - strand, within PfGW456L13_495 at 567.146 kb on - strand, within PfGW456L13_495 at 567.146 kb on - strand, within PfGW456L13_495 at 567.146 kb on - strand, within PfGW456L13_495 at 567.146 kb on - strand, within PfGW456L13_495 at 567.146 kb on - strand, within PfGW456L13_495 at 567.146 kb on - strand, within PfGW456L13_495 at 567.146 kb on - strand, within PfGW456L13_495 at 567.146 kb on - strand, within PfGW456L13_495 at 567.146 kb on - strand, within PfGW456L13_495 at 567.146 kb on - strand, within PfGW456L13_495 at 567.146 kb on - strand, within PfGW456L13_495 at 567.146 kb on - strand, within PfGW456L13_495 at 567.151 kb on + strand, within PfGW456L13_495 at 567.151 kb on + strand, within PfGW456L13_495 at 567.152 kb on - strand, within PfGW456L13_495 at 567.490 kb on + strand, within PfGW456L13_495 at 567.490 kb on + strand, within PfGW456L13_495 at 567.491 kb on - strand, within PfGW456L13_495 at 567.508 kb on + strand, within PfGW456L13_495 at 567.508 kb on + strand, within PfGW456L13_495 at 567.508 kb on + strand, within PfGW456L13_495 at 567.508 kb on + strand, within PfGW456L13_495 at 567.508 kb on + strand, within PfGW456L13_495 at 567.509 kb on - strand, within PfGW456L13_495 at 567.509 kb on - strand, within PfGW456L13_495 at 567.550 kb on + strand, within PfGW456L13_495 at 567.550 kb on + strand, within PfGW456L13_495 at 567.551 kb on - strand, within PfGW456L13_495 at 567.900 kb on - strand, within PfGW456L13_495 at 568.016 kb on - strand, within PfGW456L13_495 at 568.016 kb on - strand, within PfGW456L13_495 at 568.016 kb on - strand, within PfGW456L13_495 at 568.016 kb on - strand, within PfGW456L13_495 at 568.016 kb on - strand, within PfGW456L13_495 at 568.016 kb on - strand, within PfGW456L13_495 at 568.016 kb on - strand, within PfGW456L13_495 at 568.016 kb on - strand, within PfGW456L13_495 at 568.064 kb on - strand, within PfGW456L13_495 at 568.064 kb on - strand, within PfGW456L13_495 at 568.156 kb on + strand, within PfGW456L13_495 at 568.156 kb on + strand, within PfGW456L13_495 at 568.157 kb on - strand, within PfGW456L13_495 at 568.385 kb on + strand at 568.385 kb on + strand at 568.386 kb on - strand at 568.386 kb on - strand at 568.437 kb on + strand at 568.437 kb on + strand at 568.437 kb on + strand at 568.437 kb on + strand at 568.437 kb on + strand at 568.437 kb on + strand at 568.438 kb on - strand at 568.438 kb on - strand at 568.438 kb on - strand at 568.438 kb on - strand at 568.438 kb on - strand at 568.438 kb on - strand at 568.445 kb on + strand at 568.445 kb on + strand at 568.445 kb on + strand at 568.446 kb on - strand at 568.446 kb on - strand at 568.446 kb on - strand at 568.461 kb on + strand at 568.502 kb on + strand at 568.502 kb on + strand at 568.502 kb on + strand at 568.502 kb on + strand at 568.502 kb on + strand at 568.502 kb on + strand at 568.502 kb on + strand at 568.502 kb on + strand at 568.502 kb on + strand at 568.502 kb on + strand at 568.503 kb on - strand at 568.503 kb on - strand at 568.503 kb on - strand at 568.503 kb on - strand at 568.503 kb on - strand at 568.503 kb on - strand at 568.503 kb on - strand at 568.503 kb on - strand at 568.503 kb on - strand at 568.503 kb on - strand at 568.503 kb on - strand at 568.503 kb on - strand at 568.506 kb on + strand at 568.588 kb on + strand at 568.588 kb on + strand at 568.589 kb on - strand at 568.657 kb on - strand at 568.657 kb on - strand at 568.657 kb on - strand at 568.670 kb on + strand at 568.721 kb on + strand at 568.824 kb on + strand at 568.824 kb on + strand at 568.824 kb on + strand at 568.824 kb on + strand at 568.824 kb on + strand at 568.824 kb on + strand at 568.824 kb on + strand at 568.824 kb on + strand at 568.824 kb on + strand at 568.824 kb on + strand at 568.824 kb on + strand at 568.824 kb on + strand at 568.824 kb on + strand at 568.824 kb on + strand at 568.824 kb on + strand at 568.824 kb on + strand at 568.824 kb on + strand at 568.824 kb on + strand at 568.824 kb on + strand at 568.824 kb on + strand at 568.824 kb on + strand at 568.824 kb on + strand at 568.824 kb on + strand at 568.824 kb on + strand at 568.824 kb on + strand at 568.824 kb on + strand at 568.824 kb on + strand at 568.825 kb on - strand at 568.825 kb on - strand at 568.825 kb on - strand at 568.825 kb on - strand at 568.825 kb on - strand at 568.825 kb on - strand at 568.825 kb on - strand at 568.825 kb on - strand at 568.825 kb on - strand at 568.825 kb on - strand at 568.825 kb on - strand at 568.825 kb on - strand at 568.825 kb on - strand at 568.825 kb on - strand at 568.825 kb on - strand at 568.825 kb on - strand at 568.825 kb on - strand at 568.825 kb on - strand at 568.828 kb on + strand at 568.828 kb on + strand at 568.828 kb on + strand at 568.828 kb on + strand at 568.828 kb on + strand at 568.829 kb on - strand at 568.829 kb on - strand at 568.848 kb on + strand at 568.848 kb on + strand at 568.849 kb on - strand at 569.001 kb on + strand at 569.002 kb on - strand at 569.067 kb on + strand at 569.067 kb on + strand at 569.067 kb on + strand at 569.068 kb on - strand at 569.068 kb on - strand at 569.068 kb on - strand at 569.068 kb on - strand at 569.073 kb on + strand at 569.083 kb on + strand at 569.083 kb on + strand at 569.083 kb on + strand at 569.084 kb on - strand at 569.087 kb on + strand at 569.087 kb on + strand at 569.130 kb on - strand at 569.171 kb on + strand at 569.171 kb on + strand at 569.171 kb on + strand at 569.171 kb on + strand at 569.171 kb on + strand at 569.199 kb on + strand at 569.199 kb on + strand at 569.199 kb on + strand at 569.199 kb on + strand at 569.199 kb on + strand at 569.200 kb on - strand at 569.200 kb on - strand at 569.200 kb on - strand at 569.206 kb on + strand at 569.206 kb on + strand at 569.207 kb on - strand at 569.207 kb on - strand at 569.218 kb on + strand at 569.252 kb on + strand at 569.253 kb on - strand at 569.253 kb on - strand at 569.352 kb on + strand at 569.353 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 566,042 + PfGW456L13_494 0.43 +0.1 566,042 + PfGW456L13_494 0.43 +1.0 566,043 - PfGW456L13_494 0.43 +0.8 566,043 - PfGW456L13_494 0.43 +0.5 566,043 - PfGW456L13_494 0.43 -1.2 566,121 + PfGW456L13_494 0.49 -1.6 566,121 + PfGW456L13_494 0.49 -2.3 566,121 + PfGW456L13_494 0.49 -0.2 566,121 + PfGW456L13_494 0.49 -0.4 566,121 + PfGW456L13_494 0.49 +1.6 566,121 + PfGW456L13_494 0.49 +0.5 566,121 + PfGW456L13_494 0.49 +2.6 566,121 + PfGW456L13_494 0.49 -1.2 566,121 + PfGW456L13_494 0.49 -0.1 566,122 - PfGW456L13_494 0.49 -1.3 566,122 - PfGW456L13_494 0.49 +0.7 566,122 - PfGW456L13_494 0.49 -0.6 566,122 - PfGW456L13_494 0.49 -1.2 566,122 - PfGW456L13_494 0.49 -0.1 566,122 - PfGW456L13_494 0.49 +0.3 566,122 - PfGW456L13_494 0.49 +1.1 566,122 - PfGW456L13_494 0.49 -1.9 566,254 - PfGW456L13_494 0.60 -0.9 566,255 + PfGW456L13_494 0.60 +0.0 566,255 + PfGW456L13_494 0.60 +0.6 566,255 + PfGW456L13_494 0.60 -1.3 566,302 - PfGW456L13_494 0.64 +0.5 566,504 + PfGW456L13_494 0.79 +0.9 566,504 + PfGW456L13_494 0.79 -1.7 566,504 + PfGW456L13_494 0.79 +0.7 566,504 + PfGW456L13_494 0.79 -0.2 566,505 - PfGW456L13_494 0.79 -0.1 566,505 - PfGW456L13_494 0.79 +1.1 566,505 - PfGW456L13_494 0.79 -2.2 566,508 + PfGW456L13_494 0.80 -0.7 566,508 + PfGW456L13_494 0.80 +1.3 566,508 + PfGW456L13_494 0.80 -3.7 566,509 - PfGW456L13_494 0.80 -1.6 566,509 - PfGW456L13_494 0.80 +0.6 566,509 - PfGW456L13_494 0.80 -0.6 566,517 + PfGW456L13_494 0.80 +1.2 566,517 + PfGW456L13_494 0.80 +0.2 566,525 + PfGW456L13_494 0.81 +0.7 566,767 + -0.4 566,767 + +0.8 566,768 + -1.9 566,768 - -1.0 566,768 - +0.6 566,768 - -2.1 566,768 - +0.1 566,768 - -1.4 566,768 - -2.1 566,768 - +1.2 566,768 - -0.0 566,811 - -1.6 566,954 - +0.3 566,971 + +0.5 566,971 + -0.4 566,971 + -1.3 566,971 + -0.9 566,971 + -0.6 566,972 - -1.6 566,972 - +0.8 566,972 - +1.6 566,972 - -0.1 566,986 + +1.4 566,986 + -3.1 566,986 + -3.0 567,001 + -1.4 567,001 + -2.7 567,145 + PfGW456L13_495 0.13 -0.0 567,145 + PfGW456L13_495 0.13 -0.7 567,145 + PfGW456L13_495 0.13 -3.0 567,145 + PfGW456L13_495 0.13 -3.0 567,145 + PfGW456L13_495 0.13 +1.3 567,145 + PfGW456L13_495 0.13 +0.6 567,145 + PfGW456L13_495 0.13 +0.7 567,145 + PfGW456L13_495 0.13 -1.9 567,145 + PfGW456L13_495 0.13 +0.5 567,145 + PfGW456L13_495 0.13 -1.8 567,146 - PfGW456L13_495 0.13 +0.4 567,146 - PfGW456L13_495 0.13 -0.0 567,146 - PfGW456L13_495 0.13 -2.0 567,146 - PfGW456L13_495 0.13 -2.9 567,146 - PfGW456L13_495 0.13 -0.5 567,146 - PfGW456L13_495 0.13 -1.7 567,146 - PfGW456L13_495 0.13 +0.1 567,146 - PfGW456L13_495 0.13 -1.1 567,146 - PfGW456L13_495 0.13 +1.2 567,146 - PfGW456L13_495 0.13 +0.2 567,146 - PfGW456L13_495 0.13 -0.3 567,146 - PfGW456L13_495 0.13 -2.3 567,146 - PfGW456L13_495 0.13 -2.3 567,146 - PfGW456L13_495 0.13 -3.0 567,146 - PfGW456L13_495 0.13 -0.1 567,146 - PfGW456L13_495 0.13 -0.9 567,146 - PfGW456L13_495 0.13 -0.6 567,146 - PfGW456L13_495 0.13 -0.1 567,151 + PfGW456L13_495 0.14 +0.7 567,151 + PfGW456L13_495 0.14 -1.2 567,152 - PfGW456L13_495 0.14 +0.1 567,490 + PfGW456L13_495 0.37 +0.5 567,490 + PfGW456L13_495 0.37 +0.9 567,491 - PfGW456L13_495 0.37 -0.3 567,508 + PfGW456L13_495 0.39 -1.3 567,508 + PfGW456L13_495 0.39 +2.9 567,508 + PfGW456L13_495 0.39 -1.6 567,508 + PfGW456L13_495 0.39 -3.1 567,508 + PfGW456L13_495 0.39 +0.9 567,509 - PfGW456L13_495 0.39 -2.7 567,509 - PfGW456L13_495 0.39 +0.9 567,550 + PfGW456L13_495 0.41 -0.2 567,550 + PfGW456L13_495 0.41 +0.2 567,551 - PfGW456L13_495 0.42 +1.5 567,900 - PfGW456L13_495 0.66 +0.7 568,016 - PfGW456L13_495 0.74 +0.9 568,016 - PfGW456L13_495 0.74 -2.7 568,016 - PfGW456L13_495 0.74 -2.4 568,016 - PfGW456L13_495 0.74 -0.4 568,016 - PfGW456L13_495 0.74 +0.3 568,016 - PfGW456L13_495 0.74 -0.4 568,016 - PfGW456L13_495 0.74 -1.7 568,016 - PfGW456L13_495 0.74 +0.8 568,064 - PfGW456L13_495 0.77 +1.0 568,064 - PfGW456L13_495 0.77 +1.6 568,156 + PfGW456L13_495 0.83 +0.1 568,156 + PfGW456L13_495 0.83 +0.5 568,157 - PfGW456L13_495 0.84 +1.9 568,385 + +0.8 568,385 + -2.2 568,386 - +0.9 568,386 - -0.5 568,437 + -0.9 568,437 + +0.6 568,437 + +0.9 568,437 + +0.5 568,437 + -0.7 568,437 + -3.1 568,438 - +0.9 568,438 - -0.8 568,438 - +0.9 568,438 - +0.9 568,438 - +0.8 568,438 - -2.9 568,445 + +0.2 568,445 + +1.3 568,445 + +0.7 568,446 - -0.7 568,446 - -2.6 568,446 - -1.9 568,461 + +0.2 568,502 + -0.6 568,502 + -1.2 568,502 + -0.9 568,502 + +0.4 568,502 + -0.2 568,502 + +2.3 568,502 + -0.2 568,502 + -0.6 568,502 + +1.9 568,502 + -0.4 568,503 - +0.5 568,503 - -1.8 568,503 - +0.5 568,503 - +0.3 568,503 - -0.8 568,503 - +2.1 568,503 - +0.9 568,503 - -2.8 568,503 - +0.8 568,503 - +1.1 568,503 - -2.8 568,503 - +1.6 568,506 + -1.7 568,588 + -1.7 568,588 + -1.5 568,589 - -1.3 568,657 - +0.3 568,657 - +0.7 568,657 - +0.1 568,670 + +0.1 568,721 + +0.6 568,824 + -0.2 568,824 + -0.6 568,824 + -0.0 568,824 + -0.8 568,824 + +1.9 568,824 + -1.7 568,824 + +2.5 568,824 + -3.0 568,824 + +1.1 568,824 + +1.0 568,824 + -1.3 568,824 + -1.5 568,824 + +2.0 568,824 + -1.0 568,824 + -1.6 568,824 + +2.2 568,824 + +2.1 568,824 + +1.3 568,824 + -2.0 568,824 + -2.1 568,824 + -0.5 568,824 + -0.9 568,824 + +1.1 568,824 + -0.5 568,824 + +0.8 568,824 + -2.4 568,824 + +0.5 568,825 - +0.5 568,825 - +0.4 568,825 - +1.5 568,825 - -0.8 568,825 - -1.3 568,825 - -0.5 568,825 - -0.9 568,825 - -0.9 568,825 - +2.2 568,825 - -0.3 568,825 - -3.3 568,825 - -3.5 568,825 - +0.4 568,825 - +0.3 568,825 - -0.0 568,825 - +2.5 568,825 - -2.6 568,825 - -1.8 568,828 + -1.8 568,828 + +1.1 568,828 + +0.5 568,828 + +1.2 568,828 + -2.7 568,829 - +1.6 568,829 - +2.5 568,848 + +0.7 568,848 + +1.1 568,849 - -2.3 569,001 + -2.5 569,002 - +0.0 569,067 + -0.6 569,067 + +0.8 569,067 + +1.5 569,068 - +0.1 569,068 - +1.1 569,068 - -1.4 569,068 - +0.8 569,073 + -0.8 569,083 + -1.0 569,083 + -2.8 569,083 + -0.2 569,084 - -0.7 569,087 + -0.5 569,087 + +1.1 569,130 - -0.4 569,171 + -1.1 569,171 + -1.8 569,171 + +0.0 569,171 + +0.0 569,171 + -0.5 569,199 + -1.3 569,199 + -2.1 569,199 + -2.3 569,199 + +0.9 569,199 + -3.5 569,200 - +0.5 569,200 - -1.6 569,200 - +0.3 569,206 + +1.5 569,206 + +0.0 569,207 - -0.5 569,207 - +1.1 569,218 + +0.6 569,252 + +0.1 569,253 - -4.2 569,253 - +0.9 569,352 + +1.0 569,353 - +3.4
Or see this region's nucleotide sequence