Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_471

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_469 and PfGW456L13_470 are separated by 1 nucleotidesPfGW456L13_470 and PfGW456L13_471 are separated by 44 nucleotidesPfGW456L13_471 and PfGW456L13_472 are separated by 259 nucleotides PfGW456L13_469 - Biopolymer transport protein ExbD/TolR, at 537,874 to 538,275 _469 PfGW456L13_470 - MotA/TolQ/ExbB proton channel family protein, at 538,277 to 539,002 _470 PfGW456L13_471 - Ferric siderophore transport system, periplasmic binding protein TonB, at 539,047 to 539,856 _471 PfGW456L13_472 - Outer membrane receptor proteins, mostly Fe transport, at 540,116 to 542,476 _472 Position (kb) 539 540Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 538.059 kb on + strand, within PfGW456L13_469at 538.060 kb on - strand, within PfGW456L13_469at 538.377 kb on + strand, within PfGW456L13_470at 538.377 kb on + strand, within PfGW456L13_470at 538.377 kb on + strand, within PfGW456L13_470at 538.377 kb on + strand, within PfGW456L13_470at 538.377 kb on + strand, within PfGW456L13_470at 538.377 kb on + strand, within PfGW456L13_470at 538.377 kb on + strand, within PfGW456L13_470at 538.378 kb on - strand, within PfGW456L13_470at 538.378 kb on - strand, within PfGW456L13_470at 538.378 kb on - strand, within PfGW456L13_470at 538.437 kb on + strand, within PfGW456L13_470at 538.443 kb on + strand, within PfGW456L13_470at 538.443 kb on + strand, within PfGW456L13_470at 538.444 kb on - strand, within PfGW456L13_470at 538.444 kb on - strand, within PfGW456L13_470at 538.444 kb on - strand, within PfGW456L13_470at 538.444 kb on - strand, within PfGW456L13_470at 539.007 kb on + strandat 539.007 kb on + strandat 539.007 kb on + strandat 539.007 kb on + strandat 539.007 kb on + strandat 539.007 kb on + strandat 539.007 kb on + strandat 539.008 kb on - strandat 539.008 kb on - strandat 539.008 kb on - strandat 539.008 kb on - strandat 539.008 kb on - strandat 539.019 kb on - strandat 539.048 kb on + strandat 539.224 kb on + strand, within PfGW456L13_471at 539.224 kb on + strand, within PfGW456L13_471at 539.224 kb on + strand, within PfGW456L13_471at 539.224 kb on + strand, within PfGW456L13_471at 539.224 kb on + strand, within PfGW456L13_471at 539.224 kb on + strand, within PfGW456L13_471at 539.224 kb on + strand, within PfGW456L13_471at 539.224 kb on + strand, within PfGW456L13_471at 539.224 kb on + strand, within PfGW456L13_471at 539.224 kb on + strand, within PfGW456L13_471at 539.225 kb on - strand, within PfGW456L13_471at 539.225 kb on - strand, within PfGW456L13_471at 539.225 kb on - strand, within PfGW456L13_471at 539.301 kb on - strand, within PfGW456L13_471at 539.654 kb on + strand, within PfGW456L13_471at 539.654 kb on + strand, within PfGW456L13_471at 539.655 kb on - strand, within PfGW456L13_471at 539.655 kb on - strand, within PfGW456L13_471at 539.861 kb on + strandat 539.861 kb on + strandat 539.862 kb on - strandat 539.862 kb on - strandat 539.862 kb on - strandat 539.929 kb on - strandat 539.929 kb on - strandat 539.929 kb on - strandat 540.051 kb on + strandat 540.088 kb on + strandat 540.089 kb on - strandat 540.089 kb on - strandat 540.175 kb on - strandat 540.207 kb on + strandat 540.207 kb on + strandat 540.207 kb on + strandat 540.208 kb on - strandat 540.208 kb on - strandat 540.208 kb on - strandat 540.208 kb on - strandat 540.208 kb on - strandat 540.210 kb on + strandat 540.211 kb on - strandat 540.211 kb on - strandat 540.211 kb on - strandat 540.211 kb on - strandat 540.306 kb on + strandat 540.307 kb on - strandat 540.369 kb on + strand, within PfGW456L13_472at 540.369 kb on + strand, within PfGW456L13_472at 540.369 kb on + strand, within PfGW456L13_472at 540.369 kb on + strand, within PfGW456L13_472at 540.384 kb on + strand, within PfGW456L13_472at 540.384 kb on + strand, within PfGW456L13_472at 540.384 kb on + strand, within PfGW456L13_472at 540.385 kb on - strand, within PfGW456L13_472at 540.385 kb on - strand, within PfGW456L13_472at 540.385 kb on - strand, within PfGW456L13_472at 540.385 kb on - strand, within PfGW456L13_472at 540.538 kb on - strand, within PfGW456L13_472at 540.538 kb on - strand, within PfGW456L13_472at 540.538 kb on - strand, within PfGW456L13_472at 540.538 kb on - strand, within PfGW456L13_472at 540.546 kb on + strand, within PfGW456L13_472at 540.546 kb on + strand, within PfGW456L13_472at 540.546 kb on + strand, within PfGW456L13_472at 540.546 kb on + strand, within PfGW456L13_472at 540.546 kb on + strand, within PfGW456L13_472at 540.546 kb on + strand, within PfGW456L13_472at 540.547 kb on - strand, within PfGW456L13_472at 540.561 kb on + strand, within PfGW456L13_472at 540.561 kb on + strand, within PfGW456L13_472at 540.561 kb on + strand, within PfGW456L13_472at 540.657 kb on + strand, within PfGW456L13_472at 540.657 kb on + strand, within PfGW456L13_472at 540.657 kb on + strand, within PfGW456L13_472at 540.658 kb on - strand, within PfGW456L13_472at 540.658 kb on - strand, within PfGW456L13_472at 540.658 kb on - strand, within PfGW456L13_472at 540.682 kb on - strand, within PfGW456L13_472

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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538,059 + PfGW456L13_469 0.46 -0.6
538,060 - PfGW456L13_469 0.46 -1.1
538,377 + PfGW456L13_470 0.14 +1.5
538,377 + PfGW456L13_470 0.14 +1.1
538,377 + PfGW456L13_470 0.14 -2.7
538,377 + PfGW456L13_470 0.14 -1.0
538,377 + PfGW456L13_470 0.14 -3.1
538,377 + PfGW456L13_470 0.14 +1.1
538,377 + PfGW456L13_470 0.14 -2.9
538,378 - PfGW456L13_470 0.14 -1.2
538,378 - PfGW456L13_470 0.14 +0.9
538,378 - PfGW456L13_470 0.14 -1.7
538,437 + PfGW456L13_470 0.22 -2.0
538,443 + PfGW456L13_470 0.23 +0.6
538,443 + PfGW456L13_470 0.23 +0.1
538,444 - PfGW456L13_470 0.23 -0.6
538,444 - PfGW456L13_470 0.23 -0.1
538,444 - PfGW456L13_470 0.23 +1.0
538,444 - PfGW456L13_470 0.23 +2.0
539,007 + -0.2
539,007 + +0.1
539,007 + -0.1
539,007 + +0.6
539,007 + -0.4
539,007 + -0.9
539,007 + +0.3
539,008 - -0.4
539,008 - -3.0
539,008 - +0.1
539,008 - +1.1
539,008 - -1.8
539,019 - -0.5
539,048 + +0.9
539,224 + PfGW456L13_471 0.22 -0.0
539,224 + PfGW456L13_471 0.22 -1.7
539,224 + PfGW456L13_471 0.22 -0.0
539,224 + PfGW456L13_471 0.22 -3.3
539,224 + PfGW456L13_471 0.22 +0.1
539,224 + PfGW456L13_471 0.22 -1.5
539,224 + PfGW456L13_471 0.22 -3.4
539,224 + PfGW456L13_471 0.22 +1.3
539,224 + PfGW456L13_471 0.22 -1.4
539,224 + PfGW456L13_471 0.22 +0.0
539,225 - PfGW456L13_471 0.22 -1.4
539,225 - PfGW456L13_471 0.22 +1.4
539,225 - PfGW456L13_471 0.22 +0.3
539,301 - PfGW456L13_471 0.31 -2.5
539,654 + PfGW456L13_471 0.75 +1.2
539,654 + PfGW456L13_471 0.75 -0.4
539,655 - PfGW456L13_471 0.75 +0.8
539,655 - PfGW456L13_471 0.75 +0.3
539,861 + -2.1
539,861 + +1.1
539,862 - +0.6
539,862 - -2.0
539,862 - -0.6
539,929 - -1.0
539,929 - +0.1
539,929 - -2.7
540,051 + +1.4
540,088 + -2.5
540,089 - -0.3
540,089 - -1.1
540,175 - +0.8
540,207 + -1.5
540,207 + -0.2
540,207 + +0.3
540,208 - +1.2
540,208 - +1.7
540,208 - +0.6
540,208 - -1.1
540,208 - +1.8
540,210 + -0.8
540,211 - +0.1
540,211 - -3.0
540,211 - -0.5
540,211 - -3.3
540,306 + +0.4
540,307 - +0.9
540,369 + PfGW456L13_472 0.11 +0.3
540,369 + PfGW456L13_472 0.11 -1.5
540,369 + PfGW456L13_472 0.11 -1.2
540,369 + PfGW456L13_472 0.11 -3.8
540,384 + PfGW456L13_472 0.11 -0.6
540,384 + PfGW456L13_472 0.11 -1.9
540,384 + PfGW456L13_472 0.11 -1.9
540,385 - PfGW456L13_472 0.11 +1.4
540,385 - PfGW456L13_472 0.11 -0.7
540,385 - PfGW456L13_472 0.11 -3.4
540,385 - PfGW456L13_472 0.11 +1.6
540,538 - PfGW456L13_472 0.18 -0.5
540,538 - PfGW456L13_472 0.18 -0.8
540,538 - PfGW456L13_472 0.18 -0.2
540,538 - PfGW456L13_472 0.18 -0.3
540,546 + PfGW456L13_472 0.18 +0.3
540,546 + PfGW456L13_472 0.18 -2.6
540,546 + PfGW456L13_472 0.18 +0.8
540,546 + PfGW456L13_472 0.18 -3.0
540,546 + PfGW456L13_472 0.18 +0.2
540,546 + PfGW456L13_472 0.18 +0.9
540,547 - PfGW456L13_472 0.18 +1.1
540,561 + PfGW456L13_472 0.19 +0.3
540,561 + PfGW456L13_472 0.19 -0.1
540,561 + PfGW456L13_472 0.19 -0.8
540,657 + PfGW456L13_472 0.23 +0.5
540,657 + PfGW456L13_472 0.23 -1.1
540,657 + PfGW456L13_472 0.23 -0.4
540,658 - PfGW456L13_472 0.23 +0.6
540,658 - PfGW456L13_472 0.23 -1.0
540,658 - PfGW456L13_472 0.23 +0.1
540,682 - PfGW456L13_472 0.24 -0.5

Or see this region's nucleotide sequence