Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_3958

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_3957 and PfGW456L13_3958 overlap by 11 nucleotidesPfGW456L13_3958 and PfGW456L13_3959 are separated by 117 nucleotides PfGW456L13_3957 - Membrane fusion component of tripartite multidrug resistance system, at 4,439,336 to 4,440,424 _3957 PfGW456L13_3958 - Inner membrane component of tripartite multidrug resistance system, at 4,440,414 to 4,441,964 _3958 PfGW456L13_3959 - Excinuclease ABC subunit B, at 4,442,082 to 4,444,097 _3959 Position (kb) 4440 4441 4442Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4439.435 kb on + strandat 4439.435 kb on + strandat 4439.435 kb on + strandat 4439.435 kb on + strandat 4439.436 kb on - strandat 4439.436 kb on - strandat 4439.456 kb on + strand, within PfGW456L13_3957at 4439.456 kb on + strand, within PfGW456L13_3957at 4439.456 kb on + strand, within PfGW456L13_3957at 4439.456 kb on + strand, within PfGW456L13_3957at 4439.456 kb on + strand, within PfGW456L13_3957at 4439.456 kb on + strand, within PfGW456L13_3957at 4439.456 kb on + strand, within PfGW456L13_3957at 4439.456 kb on + strand, within PfGW456L13_3957at 4439.457 kb on - strand, within PfGW456L13_3957at 4439.457 kb on - strand, within PfGW456L13_3957at 4439.457 kb on - strand, within PfGW456L13_3957at 4439.457 kb on - strand, within PfGW456L13_3957at 4439.457 kb on - strand, within PfGW456L13_3957at 4439.651 kb on - strand, within PfGW456L13_3957at 4439.651 kb on - strand, within PfGW456L13_3957at 4439.773 kb on + strand, within PfGW456L13_3957at 4439.774 kb on - strandat 4439.774 kb on - strand, within PfGW456L13_3957at 4439.774 kb on - strand, within PfGW456L13_3957at 4440.026 kb on + strand, within PfGW456L13_3957at 4440.026 kb on + strand, within PfGW456L13_3957at 4440.026 kb on + strand, within PfGW456L13_3957at 4440.026 kb on + strand, within PfGW456L13_3957at 4440.026 kb on + strand, within PfGW456L13_3957at 4440.026 kb on + strand, within PfGW456L13_3957at 4440.026 kb on + strand, within PfGW456L13_3957at 4440.027 kb on - strand, within PfGW456L13_3957at 4440.027 kb on - strand, within PfGW456L13_3957at 4440.027 kb on - strand, within PfGW456L13_3957at 4440.027 kb on - strand, within PfGW456L13_3957at 4440.027 kb on - strand, within PfGW456L13_3957at 4440.027 kb on - strand, within PfGW456L13_3957at 4440.044 kb on + strand, within PfGW456L13_3957at 4440.264 kb on + strand, within PfGW456L13_3957at 4440.264 kb on + strand, within PfGW456L13_3957at 4440.600 kb on + strand, within PfGW456L13_3958at 4440.600 kb on + strand, within PfGW456L13_3958at 4440.601 kb on - strand, within PfGW456L13_3958at 4440.601 kb on - strand, within PfGW456L13_3958at 4440.942 kb on + strand, within PfGW456L13_3958at 4440.942 kb on + strand, within PfGW456L13_3958at 4440.942 kb on + strand, within PfGW456L13_3958at 4440.943 kb on - strand, within PfGW456L13_3958at 4440.988 kb on - strand, within PfGW456L13_3958at 4440.988 kb on - strand, within PfGW456L13_3958at 4441.039 kb on - strand, within PfGW456L13_3958at 4441.135 kb on + strand, within PfGW456L13_3958at 4441.135 kb on + strand, within PfGW456L13_3958at 4441.285 kb on - strand, within PfGW456L13_3958at 4441.296 kb on + strand, within PfGW456L13_3958at 4441.296 kb on + strand, within PfGW456L13_3958at 4441.296 kb on + strand, within PfGW456L13_3958at 4441.296 kb on + strand, within PfGW456L13_3958at 4441.296 kb on + strand, within PfGW456L13_3958at 4441.296 kb on + strand, within PfGW456L13_3958at 4441.296 kb on + strand, within PfGW456L13_3958at 4441.297 kb on - strand, within PfGW456L13_3958at 4441.297 kb on - strand, within PfGW456L13_3958at 4441.297 kb on - strand, within PfGW456L13_3958at 4441.311 kb on + strand, within PfGW456L13_3958at 4441.311 kb on + strand, within PfGW456L13_3958at 4441.332 kb on + strand, within PfGW456L13_3958at 4441.332 kb on + strand, within PfGW456L13_3958at 4441.332 kb on + strand, within PfGW456L13_3958at 4441.332 kb on + strand, within PfGW456L13_3958at 4441.333 kb on - strand, within PfGW456L13_3958at 4441.333 kb on - strand, within PfGW456L13_3958at 4441.419 kb on + strand, within PfGW456L13_3958at 4441.419 kb on + strand, within PfGW456L13_3958at 4441.419 kb on + strand, within PfGW456L13_3958at 4441.420 kb on - strand, within PfGW456L13_3958at 4441.420 kb on - strand, within PfGW456L13_3958at 4441.420 kb on - strand, within PfGW456L13_3958at 4441.420 kb on - strand, within PfGW456L13_3958at 4441.420 kb on - strand, within PfGW456L13_3958at 4441.420 kb on - strand, within PfGW456L13_3958at 4441.420 kb on - strand, within PfGW456L13_3958at 4441.593 kb on + strand, within PfGW456L13_3958at 4441.593 kb on + strand, within PfGW456L13_3958at 4441.593 kb on + strand, within PfGW456L13_3958at 4441.593 kb on + strand, within PfGW456L13_3958at 4441.593 kb on + strand, within PfGW456L13_3958at 4441.593 kb on + strand, within PfGW456L13_3958at 4441.594 kb on - strand, within PfGW456L13_3958at 4441.594 kb on - strand, within PfGW456L13_3958at 4441.594 kb on - strand, within PfGW456L13_3958at 4441.594 kb on - strand, within PfGW456L13_3958at 4441.710 kb on + strand, within PfGW456L13_3958at 4441.711 kb on - strand, within PfGW456L13_3958at 4441.719 kb on + strand, within PfGW456L13_3958at 4441.720 kb on - strand, within PfGW456L13_3958at 4441.720 kb on - strand, within PfGW456L13_3958at 4441.857 kb on + strandat 4441.857 kb on + strandat 4441.857 kb on + strandat 4441.858 kb on - strandat 4441.858 kb on - strandat 4441.962 kb on + strandat 4441.962 kb on + strandat 4441.962 kb on + strandat 4441.962 kb on + strandat 4441.962 kb on + strandat 4441.962 kb on + strandat 4441.962 kb on + strandat 4441.963 kb on - strandat 4441.963 kb on - strandat 4441.963 kb on - strandat 4441.963 kb on - strandat 4441.963 kb on - strandat 4441.963 kb on - strandat 4441.963 kb on - strandat 4441.963 kb on - strandat 4441.963 kb on - strandat 4441.963 kb on - strandat 4441.969 kb on + strandat 4441.969 kb on + strandat 4441.969 kb on + strandat 4441.969 kb on + strandat 4441.969 kb on + strandat 4441.969 kb on + strandat 4441.969 kb on + strandat 4441.969 kb on + strandat 4442.077 kb on - strandat 4442.077 kb on - strandat 4442.077 kb on - strandat 4442.077 kb on - strandat 4442.077 kb on - strandat 4442.090 kb on + strandat 4442.170 kb on + strandat 4442.170 kb on + strandat 4442.170 kb on + strandat 4442.170 kb on + strandat 4442.170 kb on + strandat 4442.170 kb on + strandat 4442.170 kb on + strandat 4442.170 kb on + strandat 4442.170 kb on + strandat 4442.171 kb on - strandat 4442.171 kb on - strandat 4442.171 kb on - strandat 4442.171 kb on - strandat 4442.171 kb on - strandat 4442.171 kb on - strandat 4442.171 kb on - strandat 4442.171 kb on - strandat 4442.196 kb on - strandat 4442.196 kb on - strandat 4442.196 kb on - strandat 4442.196 kb on - strandat 4442.196 kb on - strandat 4442.236 kb on + strandat 4442.237 kb on - strandat 4442.237 kb on - strandat 4442.446 kb on + strand, within PfGW456L13_3959at 4442.447 kb on - strand, within PfGW456L13_3959at 4442.447 kb on - strand, within PfGW456L13_3959at 4442.466 kb on - strand, within PfGW456L13_3959at 4442.466 kb on - strand, within PfGW456L13_3959at 4442.471 kb on + strand, within PfGW456L13_3959at 4442.471 kb on + strand, within PfGW456L13_3959at 4442.471 kb on + strand, within PfGW456L13_3959at 4442.472 kb on - strand, within PfGW456L13_3959at 4442.472 kb on - strand, within PfGW456L13_3959at 4442.571 kb on - strand, within PfGW456L13_3959at 4442.618 kb on + strand, within PfGW456L13_3959at 4442.619 kb on - strand, within PfGW456L13_3959at 4442.680 kb on + strand, within PfGW456L13_3959at 4442.681 kb on - strand, within PfGW456L13_3959at 4442.710 kb on + strand, within PfGW456L13_3959at 4442.711 kb on - strand, within PfGW456L13_3959at 4442.711 kb on - strand, within PfGW456L13_3959at 4442.905 kb on + strand, within PfGW456L13_3959at 4442.905 kb on + strand, within PfGW456L13_3959at 4442.905 kb on + strand, within PfGW456L13_3959at 4442.906 kb on - strand, within PfGW456L13_3959at 4442.906 kb on - strand, within PfGW456L13_3959at 4442.906 kb on - strand, within PfGW456L13_3959at 4442.906 kb on - strand, within PfGW456L13_3959at 4442.906 kb on - strand, within PfGW456L13_3959at 4442.906 kb on - strand, within PfGW456L13_3959

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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4,439,435 + -1.0
4,439,435 + +0.2
4,439,435 + +1.5
4,439,435 + -1.1
4,439,436 - +1.5
4,439,436 - -2.8
4,439,456 + PfGW456L13_3957 0.11 +1.0
4,439,456 + PfGW456L13_3957 0.11 -2.1
4,439,456 + PfGW456L13_3957 0.11 +0.2
4,439,456 + PfGW456L13_3957 0.11 -1.3
4,439,456 + PfGW456L13_3957 0.11 +0.6
4,439,456 + PfGW456L13_3957 0.11 +0.1
4,439,456 + PfGW456L13_3957 0.11 +0.2
4,439,456 + PfGW456L13_3957 0.11 -0.9
4,439,457 - PfGW456L13_3957 0.11 +0.8
4,439,457 - PfGW456L13_3957 0.11 -1.5
4,439,457 - PfGW456L13_3957 0.11 +0.2
4,439,457 - PfGW456L13_3957 0.11 -2.5
4,439,457 - PfGW456L13_3957 0.11 +1.3
4,439,651 - PfGW456L13_3957 0.29 -0.6
4,439,651 - PfGW456L13_3957 0.29 -3.3
4,439,773 + PfGW456L13_3957 0.40 +1.6
4,439,774 - -0.0
4,439,774 - PfGW456L13_3957 0.40 +1.5
4,439,774 - PfGW456L13_3957 0.40 -2.1
4,440,026 + PfGW456L13_3957 0.63 +0.9
4,440,026 + PfGW456L13_3957 0.63 -2.2
4,440,026 + PfGW456L13_3957 0.63 -1.0
4,440,026 + PfGW456L13_3957 0.63 -3.1
4,440,026 + PfGW456L13_3957 0.63 -1.6
4,440,026 + PfGW456L13_3957 0.63 -1.0
4,440,026 + PfGW456L13_3957 0.63 -2.5
4,440,027 - PfGW456L13_3957 0.63 +0.6
4,440,027 - PfGW456L13_3957 0.63 -1.9
4,440,027 - PfGW456L13_3957 0.63 +1.1
4,440,027 - PfGW456L13_3957 0.63 -1.0
4,440,027 - PfGW456L13_3957 0.63 -1.1
4,440,027 - PfGW456L13_3957 0.63 -0.7
4,440,044 + PfGW456L13_3957 0.65 -0.3
4,440,264 + PfGW456L13_3957 0.85 +0.1
4,440,264 + PfGW456L13_3957 0.85 -1.4
4,440,600 + PfGW456L13_3958 0.12 +0.7
4,440,600 + PfGW456L13_3958 0.12 -1.9
4,440,601 - PfGW456L13_3958 0.12 +0.5
4,440,601 - PfGW456L13_3958 0.12 -0.7
4,440,942 + PfGW456L13_3958 0.34 +0.3
4,440,942 + PfGW456L13_3958 0.34 +0.7
4,440,942 + PfGW456L13_3958 0.34 +1.7
4,440,943 - PfGW456L13_3958 0.34 +1.1
4,440,988 - PfGW456L13_3958 0.37 -2.6
4,440,988 - PfGW456L13_3958 0.37 -1.0
4,441,039 - PfGW456L13_3958 0.40 +0.4
4,441,135 + PfGW456L13_3958 0.46 +1.0
4,441,135 + PfGW456L13_3958 0.46 -3.1
4,441,285 - PfGW456L13_3958 0.56 -1.3
4,441,296 + PfGW456L13_3958 0.57 -2.3
4,441,296 + PfGW456L13_3958 0.57 -4.6
4,441,296 + PfGW456L13_3958 0.57 -2.2
4,441,296 + PfGW456L13_3958 0.57 -1.0
4,441,296 + PfGW456L13_3958 0.57 -1.3
4,441,296 + PfGW456L13_3958 0.57 +0.3
4,441,296 + PfGW456L13_3958 0.57 -0.2
4,441,297 - PfGW456L13_3958 0.57 -0.9
4,441,297 - PfGW456L13_3958 0.57 +0.4
4,441,297 - PfGW456L13_3958 0.57 -2.0
4,441,311 + PfGW456L13_3958 0.58 -0.1
4,441,311 + PfGW456L13_3958 0.58 -1.8
4,441,332 + PfGW456L13_3958 0.59 +1.7
4,441,332 + PfGW456L13_3958 0.59 -0.7
4,441,332 + PfGW456L13_3958 0.59 -2.0
4,441,332 + PfGW456L13_3958 0.59 +0.5
4,441,333 - PfGW456L13_3958 0.59 +0.1
4,441,333 - PfGW456L13_3958 0.59 +0.2
4,441,419 + PfGW456L13_3958 0.65 +1.7
4,441,419 + PfGW456L13_3958 0.65 -0.4
4,441,419 + PfGW456L13_3958 0.65 +1.7
4,441,420 - PfGW456L13_3958 0.65 +0.3
4,441,420 - PfGW456L13_3958 0.65 -0.0
4,441,420 - PfGW456L13_3958 0.65 +0.9
4,441,420 - PfGW456L13_3958 0.65 -2.6
4,441,420 - PfGW456L13_3958 0.65 +1.2
4,441,420 - PfGW456L13_3958 0.65 +1.1
4,441,420 - PfGW456L13_3958 0.65 -0.6
4,441,593 + PfGW456L13_3958 0.76 -0.3
4,441,593 + PfGW456L13_3958 0.76 -2.0
4,441,593 + PfGW456L13_3958 0.76 +0.1
4,441,593 + PfGW456L13_3958 0.76 +1.6
4,441,593 + PfGW456L13_3958 0.76 +0.3
4,441,593 + PfGW456L13_3958 0.76 -1.0
4,441,594 - PfGW456L13_3958 0.76 -0.6
4,441,594 - PfGW456L13_3958 0.76 +0.5
4,441,594 - PfGW456L13_3958 0.76 +1.7
4,441,594 - PfGW456L13_3958 0.76 -0.0
4,441,710 + PfGW456L13_3958 0.84 -3.2
4,441,711 - PfGW456L13_3958 0.84 +0.1
4,441,719 + PfGW456L13_3958 0.84 -2.4
4,441,720 - PfGW456L13_3958 0.84 +1.4
4,441,720 - PfGW456L13_3958 0.84 -0.7
4,441,857 + +0.6
4,441,857 + -3.1
4,441,857 + -3.4
4,441,858 - -2.3
4,441,858 - -1.6
4,441,962 + +0.5
4,441,962 + -0.5
4,441,962 + -0.1
4,441,962 + -1.3
4,441,962 + +0.3
4,441,962 + +1.0
4,441,962 + +2.1
4,441,963 - -0.8
4,441,963 - +0.9
4,441,963 - -0.5
4,441,963 - -0.6
4,441,963 - +0.7
4,441,963 - -0.3
4,441,963 - +0.2
4,441,963 - -0.4
4,441,963 - +1.0
4,441,963 - -1.1
4,441,969 + -3.3
4,441,969 + -3.4
4,441,969 + +0.8
4,441,969 + +1.0
4,441,969 + -0.1
4,441,969 + -0.7
4,441,969 + +1.1
4,441,969 + -0.6
4,442,077 - -3.7
4,442,077 - -0.9
4,442,077 - +1.3
4,442,077 - +0.4
4,442,077 - +0.7
4,442,090 + -0.0
4,442,170 + -3.0
4,442,170 + -0.2
4,442,170 + -0.7
4,442,170 + +0.4
4,442,170 + -1.9
4,442,170 + +0.7
4,442,170 + +1.4
4,442,170 + -2.8
4,442,170 + +1.0
4,442,171 - +0.8
4,442,171 - -0.0
4,442,171 - +0.3
4,442,171 - -1.3
4,442,171 - +0.6
4,442,171 - -2.2
4,442,171 - +0.6
4,442,171 - +0.6
4,442,196 - -0.5
4,442,196 - +1.3
4,442,196 - -1.3
4,442,196 - +0.7
4,442,196 - +0.5
4,442,236 + -0.1
4,442,237 - +0.1
4,442,237 - +0.6
4,442,446 + PfGW456L13_3959 0.18 -0.6
4,442,447 - PfGW456L13_3959 0.18 +0.9
4,442,447 - PfGW456L13_3959 0.18 +0.7
4,442,466 - PfGW456L13_3959 0.19 +0.4
4,442,466 - PfGW456L13_3959 0.19 -2.2
4,442,471 + PfGW456L13_3959 0.19 -1.2
4,442,471 + PfGW456L13_3959 0.19 -1.0
4,442,471 + PfGW456L13_3959 0.19 +1.1
4,442,472 - PfGW456L13_3959 0.19 -0.8
4,442,472 - PfGW456L13_3959 0.19 +1.4
4,442,571 - PfGW456L13_3959 0.24 +2.1
4,442,618 + PfGW456L13_3959 0.27 +0.7
4,442,619 - PfGW456L13_3959 0.27 +1.1
4,442,680 + PfGW456L13_3959 0.30 -0.1
4,442,681 - PfGW456L13_3959 0.30 +0.2
4,442,710 + PfGW456L13_3959 0.31 -3.1
4,442,711 - PfGW456L13_3959 0.31 -0.9
4,442,711 - PfGW456L13_3959 0.31 +1.0
4,442,905 + PfGW456L13_3959 0.41 +1.3
4,442,905 + PfGW456L13_3959 0.41 -0.4
4,442,905 + PfGW456L13_3959 0.41 -1.0
4,442,906 - PfGW456L13_3959 0.41 +1.6
4,442,906 - PfGW456L13_3959 0.41 -0.0
4,442,906 - PfGW456L13_3959 0.41 +2.0
4,442,906 - PfGW456L13_3959 0.41 +0.7
4,442,906 - PfGW456L13_3959 0.41 -1.2
4,442,906 - PfGW456L13_3959 0.41 -1.6

Or see this region's nucleotide sequence