Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2110

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_2109 and PfGW456L13_2110 are separated by 19 nucleotidesPfGW456L13_2110 and PfGW456L13_2111 overlap by 8 nucleotides PfGW456L13_2109 - FIG004453: protein YceG like, at 2,314,020 to 2,315,252 _2109 PfGW456L13_2110 - Thymidylate kinase (EC 2.7.4.9), at 2,315,272 to 2,315,904 _2110 PfGW456L13_2111 - DNA polymerase III delta prime subunit (EC 2.7.7.7), at 2,315,897 to 2,316,883 _2111 Position (kb) 2315 2316Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2314.427 kb on + strand, within PfGW456L13_2109at 2314.427 kb on + strand, within PfGW456L13_2109at 2314.427 kb on + strand, within PfGW456L13_2109at 2314.427 kb on + strand, within PfGW456L13_2109at 2314.515 kb on + strand, within PfGW456L13_2109at 2314.515 kb on + strand, within PfGW456L13_2109at 2314.515 kb on + strand, within PfGW456L13_2109at 2314.515 kb on + strand, within PfGW456L13_2109at 2314.515 kb on + strand, within PfGW456L13_2109at 2314.521 kb on + strand, within PfGW456L13_2109at 2314.616 kb on + strand, within PfGW456L13_2109at 2314.616 kb on + strand, within PfGW456L13_2109at 2314.623 kb on + strand, within PfGW456L13_2109at 2314.623 kb on + strand, within PfGW456L13_2109at 2314.623 kb on + strand, within PfGW456L13_2109at 2314.623 kb on + strand, within PfGW456L13_2109at 2314.623 kb on + strand, within PfGW456L13_2109at 2314.635 kb on + strand, within PfGW456L13_2109at 2314.767 kb on + strand, within PfGW456L13_2109at 2314.785 kb on + strand, within PfGW456L13_2109at 2314.830 kb on + strand, within PfGW456L13_2109at 2314.830 kb on + strand, within PfGW456L13_2109at 2314.830 kb on + strand, within PfGW456L13_2109at 2314.830 kb on + strand, within PfGW456L13_2109at 2314.830 kb on + strand, within PfGW456L13_2109at 2314.832 kb on + strand, within PfGW456L13_2109at 2314.839 kb on + strand, within PfGW456L13_2109at 2314.839 kb on + strand, within PfGW456L13_2109at 2314.839 kb on + strand, within PfGW456L13_2109at 2314.839 kb on + strand, within PfGW456L13_2109at 2314.839 kb on + strand, within PfGW456L13_2109at 2314.839 kb on + strand, within PfGW456L13_2109at 2314.839 kb on + strand, within PfGW456L13_2109at 2314.839 kb on + strand, within PfGW456L13_2109at 2314.839 kb on + strand, within PfGW456L13_2109at 2314.839 kb on + strand, within PfGW456L13_2109at 2314.839 kb on + strand, within PfGW456L13_2109at 2314.839 kb on + strand, within PfGW456L13_2109at 2314.839 kb on + strand, within PfGW456L13_2109at 2314.839 kb on + strand, within PfGW456L13_2109at 2314.932 kb on + strand, within PfGW456L13_2109at 2314.932 kb on + strand, within PfGW456L13_2109

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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2,314,427 + PfGW456L13_2109 0.33 -1.3
2,314,427 + PfGW456L13_2109 0.33 -0.1
2,314,427 + PfGW456L13_2109 0.33 -0.3
2,314,427 + PfGW456L13_2109 0.33 -2.9
2,314,515 + PfGW456L13_2109 0.40 +0.1
2,314,515 + PfGW456L13_2109 0.40 +0.5
2,314,515 + PfGW456L13_2109 0.40 -0.2
2,314,515 + PfGW456L13_2109 0.40 +1.2
2,314,515 + PfGW456L13_2109 0.40 -0.8
2,314,521 + PfGW456L13_2109 0.41 -0.1
2,314,616 + PfGW456L13_2109 0.48 -1.2
2,314,616 + PfGW456L13_2109 0.48 +0.1
2,314,623 + PfGW456L13_2109 0.49 -1.2
2,314,623 + PfGW456L13_2109 0.49 -0.2
2,314,623 + PfGW456L13_2109 0.49 -0.4
2,314,623 + PfGW456L13_2109 0.49 -3.7
2,314,623 + PfGW456L13_2109 0.49 +0.1
2,314,635 + PfGW456L13_2109 0.50 +1.1
2,314,767 + PfGW456L13_2109 0.61 -1.2
2,314,785 + PfGW456L13_2109 0.62 -2.2
2,314,830 + PfGW456L13_2109 0.66 -3.4
2,314,830 + PfGW456L13_2109 0.66 -0.4
2,314,830 + PfGW456L13_2109 0.66 -1.1
2,314,830 + PfGW456L13_2109 0.66 -3.6
2,314,830 + PfGW456L13_2109 0.66 +0.3
2,314,832 + PfGW456L13_2109 0.66 +0.4
2,314,839 + PfGW456L13_2109 0.66 +1.0
2,314,839 + PfGW456L13_2109 0.66 -2.0
2,314,839 + PfGW456L13_2109 0.66 -0.5
2,314,839 + PfGW456L13_2109 0.66 +0.3
2,314,839 + PfGW456L13_2109 0.66 -0.3
2,314,839 + PfGW456L13_2109 0.66 -3.8
2,314,839 + PfGW456L13_2109 0.66 -1.1
2,314,839 + PfGW456L13_2109 0.66 -0.7
2,314,839 + PfGW456L13_2109 0.66 +0.5
2,314,839 + PfGW456L13_2109 0.66 +0.6
2,314,839 + PfGW456L13_2109 0.66 +0.7
2,314,839 + PfGW456L13_2109 0.66 +0.9
2,314,839 + PfGW456L13_2109 0.66 -1.2
2,314,839 + PfGW456L13_2109 0.66 +0.5
2,314,932 + PfGW456L13_2109 0.74 -2.7
2,314,932 + PfGW456L13_2109 0.74 -0.6

Or see this region's nucleotide sequence