Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_201

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_200 and PfGW456L13_201 overlap by 4 nucleotidesPfGW456L13_201 and PfGW456L13_202 overlap by 31 nucleotidesPfGW456L13_202 and PfGW456L13_203 overlap by 1 nucleotides PfGW456L13_200 - Glycosyl transferase in large core OS assembly cluster, at 228,991 to 230,145 _200 PfGW456L13_201 - Hypothetical protein FIG015671 in large core OS assembly cluster, at 230,142 to 231,623 _201 PfGW456L13_202 - Probable transcription regulator Mig-14, at 231,593 to 232,489 _202 PfGW456L13_203 - Glycosyl transferase in large core OS assembly cluster, at 232,489 to 233,619 _203 Position (kb) 230 231 232Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 229.334 kb on + strand, within PfGW456L13_200at 229.334 kb on + strand, within PfGW456L13_200at 229.334 kb on + strand, within PfGW456L13_200at 229.334 kb on + strand, within PfGW456L13_200at 229.335 kb on - strand, within PfGW456L13_200at 229.461 kb on - strand, within PfGW456L13_200at 229.461 kb on - strand, within PfGW456L13_200at 229.496 kb on + strand, within PfGW456L13_200at 229.496 kb on + strand, within PfGW456L13_200at 229.496 kb on + strand, within PfGW456L13_200at 229.496 kb on + strand, within PfGW456L13_200at 229.496 kb on + strand, within PfGW456L13_200at 229.496 kb on + strand, within PfGW456L13_200at 229.497 kb on - strand, within PfGW456L13_200at 229.497 kb on - strand, within PfGW456L13_200at 229.497 kb on - strand, within PfGW456L13_200at 229.497 kb on - strand, within PfGW456L13_200at 229.497 kb on - strand, within PfGW456L13_200at 229.497 kb on - strand, within PfGW456L13_200at 229.497 kb on - strand, within PfGW456L13_200at 229.497 kb on - strand, within PfGW456L13_200at 229.497 kb on - strand, within PfGW456L13_200at 229.497 kb on - strand, within PfGW456L13_200at 229.497 kb on - strand, within PfGW456L13_200at 229.497 kb on - strand, within PfGW456L13_200at 229.500 kb on + strand, within PfGW456L13_200at 229.500 kb on + strand, within PfGW456L13_200at 229.501 kb on - strand, within PfGW456L13_200at 229.501 kb on - strand, within PfGW456L13_200at 229.640 kb on + strand, within PfGW456L13_200at 229.640 kb on + strand, within PfGW456L13_200at 229.640 kb on + strand, within PfGW456L13_200at 229.640 kb on + strand, within PfGW456L13_200at 229.640 kb on + strand, within PfGW456L13_200at 229.641 kb on - strand, within PfGW456L13_200at 229.641 kb on - strand, within PfGW456L13_200at 229.641 kb on - strand, within PfGW456L13_200at 229.641 kb on - strand, within PfGW456L13_200at 229.641 kb on - strand, within PfGW456L13_200at 229.641 kb on - strand, within PfGW456L13_200at 229.641 kb on - strand, within PfGW456L13_200at 229.641 kb on - strand, within PfGW456L13_200at 229.641 kb on - strand, within PfGW456L13_200at 229.644 kb on + strand, within PfGW456L13_200at 229.644 kb on + strand, within PfGW456L13_200at 229.644 kb on + strand, within PfGW456L13_200at 229.645 kb on - strand, within PfGW456L13_200at 229.645 kb on - strand, within PfGW456L13_200at 229.645 kb on - strand, within PfGW456L13_200at 229.645 kb on - strand, within PfGW456L13_200at 229.645 kb on - strand, within PfGW456L13_200at 229.645 kb on - strand, within PfGW456L13_200at 229.682 kb on + strand, within PfGW456L13_200at 229.682 kb on + strand, within PfGW456L13_200at 229.682 kb on + strand, within PfGW456L13_200at 229.682 kb on + strand, within PfGW456L13_200at 229.683 kb on - strand, within PfGW456L13_200at 229.683 kb on - strand, within PfGW456L13_200at 229.683 kb on - strand, within PfGW456L13_200at 229.683 kb on - strand, within PfGW456L13_200at 229.683 kb on - strand, within PfGW456L13_200at 229.757 kb on + strand, within PfGW456L13_200at 229.769 kb on + strand, within PfGW456L13_200at 229.870 kb on + strand, within PfGW456L13_200at 229.870 kb on + strand, within PfGW456L13_200at 229.870 kb on + strand, within PfGW456L13_200at 229.870 kb on + strand, within PfGW456L13_200at 229.870 kb on + strand, within PfGW456L13_200at 229.870 kb on + strand, within PfGW456L13_200at 229.870 kb on + strand, within PfGW456L13_200at 229.871 kb on - strand, within PfGW456L13_200at 229.871 kb on - strand, within PfGW456L13_200at 229.871 kb on - strand, within PfGW456L13_200at 229.901 kb on + strand, within PfGW456L13_200at 229.901 kb on + strand, within PfGW456L13_200at 229.901 kb on + strand, within PfGW456L13_200at 229.902 kb on - strand, within PfGW456L13_200at 229.902 kb on - strand, within PfGW456L13_200at 229.902 kb on - strand, within PfGW456L13_200at 229.902 kb on - strand, within PfGW456L13_200at 229.902 kb on - strand, within PfGW456L13_200at 229.902 kb on - strand, within PfGW456L13_200at 229.962 kb on - strand, within PfGW456L13_200at 230.106 kb on - strandat 230.106 kb on - strandat 230.106 kb on - strandat 230.106 kb on - strandat 230.145 kb on + strandat 230.146 kb on - strandat 230.146 kb on - strandat 230.146 kb on - strandat 230.146 kb on - strandat 230.146 kb on - strandat 230.242 kb on + strandat 230.242 kb on + strandat 230.277 kb on + strandat 230.278 kb on - strandat 230.278 kb on - strandat 230.278 kb on - strandat 230.278 kb on - strandat 230.278 kb on - strandat 230.278 kb on - strandat 230.387 kb on - strand, within PfGW456L13_201at 230.808 kb on + strand, within PfGW456L13_201at 230.809 kb on - strand, within PfGW456L13_201at 230.827 kb on - strand, within PfGW456L13_201at 230.983 kb on + strand, within PfGW456L13_201at 230.993 kb on - strand, within PfGW456L13_201at 231.166 kb on + strand, within PfGW456L13_201at 231.245 kb on + strand, within PfGW456L13_201at 231.246 kb on - strand, within PfGW456L13_201at 231.386 kb on - strand, within PfGW456L13_201at 231.409 kb on + strand, within PfGW456L13_201at 231.409 kb on + strand, within PfGW456L13_201at 231.542 kb on + strandat 231.597 kb on - strandat 231.636 kb on + strandat 231.636 kb on + strandat 231.728 kb on + strand, within PfGW456L13_202at 231.780 kb on + strand, within PfGW456L13_202at 231.816 kb on + strand, within PfGW456L13_202at 231.957 kb on + strand, within PfGW456L13_202at 231.957 kb on + strand, within PfGW456L13_202at 231.957 kb on + strand, within PfGW456L13_202at 231.957 kb on + strand, within PfGW456L13_202at 231.957 kb on + strand, within PfGW456L13_202at 231.957 kb on + strand, within PfGW456L13_202at 232.152 kb on + strand, within PfGW456L13_202at 232.152 kb on + strand, within PfGW456L13_202at 232.152 kb on + strand, within PfGW456L13_202at 232.428 kb on + strandat 232.428 kb on + strandat 232.432 kb on + strandat 232.432 kb on + strandat 232.432 kb on + strandat 232.432 kb on + strandat 232.620 kb on + strand, within PfGW456L13_203

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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229,334 + PfGW456L13_200 0.30 +5.3
229,334 + PfGW456L13_200 0.30 +4.8
229,334 + PfGW456L13_200 0.30 +5.5
229,334 + PfGW456L13_200 0.30 +4.3
229,335 - PfGW456L13_200 0.30 +5.7
229,461 - PfGW456L13_200 0.41 +4.2
229,461 - PfGW456L13_200 0.41 +5.3
229,496 + PfGW456L13_200 0.44 +5.1
229,496 + PfGW456L13_200 0.44 +4.6
229,496 + PfGW456L13_200 0.44 +5.9
229,496 + PfGW456L13_200 0.44 +5.7
229,496 + PfGW456L13_200 0.44 +5.7
229,496 + PfGW456L13_200 0.44 +5.2
229,497 - PfGW456L13_200 0.44 +4.3
229,497 - PfGW456L13_200 0.44 +5.3
229,497 - PfGW456L13_200 0.44 +4.8
229,497 - PfGW456L13_200 0.44 +5.1
229,497 - PfGW456L13_200 0.44 +5.2
229,497 - PfGW456L13_200 0.44 +6.0
229,497 - PfGW456L13_200 0.44 +5.7
229,497 - PfGW456L13_200 0.44 +5.6
229,497 - PfGW456L13_200 0.44 +5.0
229,497 - PfGW456L13_200 0.44 +5.1
229,497 - PfGW456L13_200 0.44 +5.0
229,497 - PfGW456L13_200 0.44 +5.8
229,500 + PfGW456L13_200 0.44 +5.4
229,500 + PfGW456L13_200 0.44 +5.7
229,501 - PfGW456L13_200 0.44 +5.8
229,501 - PfGW456L13_200 0.44 +5.7
229,640 + PfGW456L13_200 0.56 +4.9
229,640 + PfGW456L13_200 0.56 +5.0
229,640 + PfGW456L13_200 0.56 +5.6
229,640 + PfGW456L13_200 0.56 +6.6
229,640 + PfGW456L13_200 0.56 +4.8
229,641 - PfGW456L13_200 0.56 +4.9
229,641 - PfGW456L13_200 0.56 +4.8
229,641 - PfGW456L13_200 0.56 +4.2
229,641 - PfGW456L13_200 0.56 +4.6
229,641 - PfGW456L13_200 0.56 +5.0
229,641 - PfGW456L13_200 0.56 +5.1
229,641 - PfGW456L13_200 0.56 +5.1
229,641 - PfGW456L13_200 0.56 +5.0
229,641 - PfGW456L13_200 0.56 +5.5
229,644 + PfGW456L13_200 0.57 +4.9
229,644 + PfGW456L13_200 0.57 +5.8
229,644 + PfGW456L13_200 0.57 +4.6
229,645 - PfGW456L13_200 0.57 +6.2
229,645 - PfGW456L13_200 0.57 +5.9
229,645 - PfGW456L13_200 0.57 +6.3
229,645 - PfGW456L13_200 0.57 +4.8
229,645 - PfGW456L13_200 0.57 +5.7
229,645 - PfGW456L13_200 0.57 +6.3
229,682 + PfGW456L13_200 0.60 +5.2
229,682 + PfGW456L13_200 0.60 +4.3
229,682 + PfGW456L13_200 0.60 +4.8
229,682 + PfGW456L13_200 0.60 +5.3
229,683 - PfGW456L13_200 0.60 +6.0
229,683 - PfGW456L13_200 0.60 +6.1
229,683 - PfGW456L13_200 0.60 +5.3
229,683 - PfGW456L13_200 0.60 +5.1
229,683 - PfGW456L13_200 0.60 +5.1
229,757 + PfGW456L13_200 0.66 +5.4
229,769 + PfGW456L13_200 0.67 +4.6
229,870 + PfGW456L13_200 0.76 +4.4
229,870 + PfGW456L13_200 0.76 +4.3
229,870 + PfGW456L13_200 0.76 +5.2
229,870 + PfGW456L13_200 0.76 +5.1
229,870 + PfGW456L13_200 0.76 +5.2
229,870 + PfGW456L13_200 0.76 +5.4
229,870 + PfGW456L13_200 0.76 +5.4
229,871 - PfGW456L13_200 0.76 +4.4
229,871 - PfGW456L13_200 0.76 +5.0
229,871 - PfGW456L13_200 0.76 +5.7
229,901 + PfGW456L13_200 0.79 +4.0
229,901 + PfGW456L13_200 0.79 +5.7
229,901 + PfGW456L13_200 0.79 +5.5
229,902 - PfGW456L13_200 0.79 +5.0
229,902 - PfGW456L13_200 0.79 +5.3
229,902 - PfGW456L13_200 0.79 +6.1
229,902 - PfGW456L13_200 0.79 +5.6
229,902 - PfGW456L13_200 0.79 +5.9
229,902 - PfGW456L13_200 0.79 +6.0
229,962 - PfGW456L13_200 0.84 +5.4
230,106 - +6.0
230,106 - +5.5
230,106 - +4.9
230,106 - +5.9
230,145 + +3.1
230,146 - +1.5
230,146 - +1.6
230,146 - -0.1
230,146 - +1.2
230,146 - +1.4
230,242 + -1.2
230,242 + +0.1
230,277 + +1.1
230,278 - +1.5
230,278 - +0.7
230,278 - +0.2
230,278 - -2.3
230,278 - -0.4
230,278 - -2.4
230,387 - PfGW456L13_201 0.17 -0.6
230,808 + PfGW456L13_201 0.45 +2.7
230,809 - PfGW456L13_201 0.45 -1.9
230,827 - PfGW456L13_201 0.46 +0.3
230,983 + PfGW456L13_201 0.57 -0.7
230,993 - PfGW456L13_201 0.57 +0.4
231,166 + PfGW456L13_201 0.69 +1.4
231,245 + PfGW456L13_201 0.74 +1.6
231,246 - PfGW456L13_201 0.74 +1.4
231,386 - PfGW456L13_201 0.84 +1.4
231,409 + PfGW456L13_201 0.85 +2.9
231,409 + PfGW456L13_201 0.85 +3.4
231,542 + +3.2
231,597 - +0.4
231,636 + -1.9
231,636 + +0.7
231,728 + PfGW456L13_202 0.15 +0.5
231,780 + PfGW456L13_202 0.21 +0.1
231,816 + PfGW456L13_202 0.25 +1.9
231,957 + PfGW456L13_202 0.41 +0.9
231,957 + PfGW456L13_202 0.41 +2.0
231,957 + PfGW456L13_202 0.41 +4.3
231,957 + PfGW456L13_202 0.41 +3.1
231,957 + PfGW456L13_202 0.41 +2.8
231,957 + PfGW456L13_202 0.41 +1.6
232,152 + PfGW456L13_202 0.62 +3.5
232,152 + PfGW456L13_202 0.62 +4.1
232,152 + PfGW456L13_202 0.62 +3.3
232,428 + +2.9
232,428 + +2.9
232,432 + +3.5
232,432 + +0.0
232,432 + +4.1
232,432 + +0.8
232,620 + PfGW456L13_203 0.12 +6.1

Or see this region's nucleotide sequence